FvH4_4g09342

Lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005408
Physical Location & Seq
Reverse (-)
11068293 .. 11068663
371 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09342.t1

Sequence Viewer

Length: 288 bp
ATGAACCCAAGACTAGAGTCATCATTCATCAAATTGCCATTAGTAGAGAGCTTAGAGCTCCCTCTCCCCACCGGCACCGGTGCATCTACAACAACCCGGTCTGATTTTTCAATTAATCAACTGCTCCATGAAGATGAAGAACAAGCAGTCGCCGTCGAATTCGATACTCGGCTCGATTTACCCTACGACGATCCGAATGATAAACATGTGGGTCTCGATATTGAGAGCTTGAATTCGATCAAGCCCGCCAAACCGATTGAGCAAGATGTGGATTTGAGGATCGATTGA

Protein Analysis

96

Amino Acids

10.62

Weight (kDa)

4.28

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 44 - 84 9.3e-09 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AciI CCGC 1 cut(s) 246
AclWI GGATC 2 cut(s) 185, 287
AcsI RAATTY 2 cut(s) 158, 232
AflIII ACRYGT 1 cut(s) 205
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 2 cut(s) 111, 232
AluBI AGCT 3 cut(s) 51, 58, 228
AluI AGCT 3 cut(s) 51, 58, 228
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 2 cut(s) 185, 287
ApoI RAATTY 2 cut(s) 158, 232
AseI ATTAAT 1 cut(s) 114
AsiGI ACCGGT 1 cut(s) 77
AsuC2I CCSGG 1 cut(s) 97
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 60
BceAI ACGGC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 92
BoxI GACNNNNGTC 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 97
Bsa29I ATCGAT 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 77
Bse118I RCCGGY 2 cut(s) 71, 77
BseCI ATCGAT 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 77
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 3 cut(s) 72, 78, 97
BsmAI GTCTC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 3 cut(s) 190, 237, 279
BspACI CCGC 1 cut(s) 246
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 2 cut(s) 185, 287
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 218
BsrFI RCCGGY 2 cut(s) 71, 77
BssAI RCCGGY 2 cut(s) 71, 77
BssMI GATC 3 cut(s) 190, 237, 279
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 52
BstKTI GATC 3 cut(s) 193, 240, 282
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 190, 237, 279
BstNSI RCATGY 1 cut(s) 209
BstPAI GACNNNNGTC 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 246
Cfr10I RCCGGY 2 cut(s) 71, 77
ClaI ATCGAT 1 cut(s) 282
CspAI ACCGGT 1 cut(s) 77
CviAII CATG 2 cut(s) 128, 206
CviJI RGCY 5 cut(s) 51, 58, 172, 228, 244
CviKI_1 RGCY 5 cut(s) 51, 58, 172, 228, 244
DdeI CTNAG 1 cut(s) 52
DpnI GATC 3 cut(s) 192, 239, 281
DpnII GATC 3 cut(s) 190, 237, 279
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoRI GAATTC 2 cut(s) 158, 232
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 2 cut(s) 131, 209
FaiI YATR 2 cut(s) 129, 207
FatI CATG 2 cut(s) 127, 205
FauI CCCGC 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 60
FspBI CTAG 1 cut(s) 14
HapII CCGG 3 cut(s) 72, 78, 97
Hin1II CATG 2 cut(s) 131, 209
HinfI GANTC 1 cut(s) 17
HpaII CCGG 3 cut(s) 72, 78, 97
Hpy188I TCNGA 2 cut(s) 103, 195
Hpy188III TCNNGA 1 cut(s) 215
Hpy99I CGWCG 2 cut(s) 158, 191
HpyCH4V TGCA 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 52
Hsp92II CATG 2 cut(s) 131, 209
Kzo9I GATC 3 cut(s) 190, 237, 279
LmnI GCTCC 2 cut(s) 63, 129
LpnPI CCDG 3 cut(s) 85, 91, 110
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 14
MalI GATC 3 cut(s) 192, 239, 281
MboI GATC 3 cut(s) 190, 237, 279
MboII GAAGA 2 cut(s) 143, 149
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 4 cut(s) 32, 111, 158, 232
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 2 cut(s) 72, 270
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 3 cut(s) 72, 78, 97
MspR9I CCNGG 1 cut(s) 97
NciI CCSGG 1 cut(s) 97
NdeII GATC 3 cut(s) 190, 237, 279
NlaIII CATG 2 cut(s) 131, 209
NlaIV GGNNCC 1 cut(s) 76
NmeAIII GCCGAG 1 cut(s) 148
NspI RCATGY 1 cut(s) 209
PciI ACATGT 1 cut(s) 205
PinAI ACCGGT 1 cut(s) 77
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PscI ACATGT 1 cut(s) 205
PshAI GACNNNNGTC 1 cut(s) 16
PshBI ATTAAT 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 114
Sau3AI GATC 3 cut(s) 190, 237, 279
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 60
SetI ASST 3 cut(s) 53, 60, 230
SfaNI GCATC 1 cut(s) 92
SgrAI CRCCGGYG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 4 cut(s) 32, 111, 158, 232
SsiI CCGC 1 cut(s) 246
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 95
TaqI TCGA 6 cut(s) 156, 162, 174, 216, 236, 282
TasI AATT 4 cut(s) 32, 111, 158, 232
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TspDTI ATGAA 4 cut(s) 16, 17, 144, 150
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 2 cut(s) 158, 232
XceI RCATGY 1 cut(s) 209
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.