Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005408

Physical Location & Seq

Genomic Coordinates Forward (+)

15353081 .. 15359418

Gene Structure 6338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11641.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTGCAAGGCTTGCATCCTCTTTGGCTCTGGAATGGGGGAAGAAGGCGATGGATTTTAGACCGTCAAAAGGGAAAGGTCTCCGTCAAGCGAAGGAAGGCGTTGTTTGCCATTCACAACTTGCTCAGACTCCTGATCGTATGCGACGTGAGGCAGAGGCTTTAAAAGCTTTGCTTCAGATAGCTTCGGCACCTGGACCGCAACAGTCAGAGCAATCTGTGGGCAACACTGGGGACGCTAGTTGCAAGACAACAGACAGGCAGGCGGCAGAACCTAAGGATAAATGTTCCTCCACTAAGCAAGAATGGTTCCCCAAGCGATTGAACATCGTCATAGTACAGACAATGGTGGCTGAGCCAAGTCTGGTAGCGGTGTCTACTTCTACGGAAGGAAACTTGTATAGACTAGAGAGCTTAGAGGTAGTTACGTCACATCTTGAACCCAATAAAGCCTCTTGCTTTCTCTCTCTTCTCCCTCTTCTTCCTCCGCCGTCGTTGGTCTCACCCCTTAGCTCCCTCTCCAACCGGCACCGTCTATCTACAACAACCCGGTCTGATTTTTCAGGCAATCAACTCCTCCCTGAAGATGAAGAACAAGTCCTCGCCGTCGAATTCCATATCCGGATCGATTTACTCTACGACGAGCCGAATGATAACCATGTGGGTCTCGACATTGAGAACTTGAATTCGATCAAGTCCGCCAACACGATTGAGCAAGATGCATGTGGGTTTGAGGATCGGGACGGCAATTACGGTCTGATTTGCAGATACAGGGTTGTTTTTATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

29.01

Weight (kDa)

5.81

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55830
fragaria_vesca	FvH4_2g31170 FvH4_3g42990 FvH4_4g09342 FvH4_4g11641
malus_domestica	MD03G1026600.v1.1 MD11G1030600.v1.1
prunus_persica	Prupe.6G024000_v2.0.a1
pyrus_communis	pycom03g02180 pycom11g02420 pycom11g02430 pycom11g02480
rosa_chinensis	RchiOBHm_Chr5g0077031
rosa_laevigata	RLG00000036643
rosa_multiflora	Rmu_sc0003323.1_g000008 Rmu_sc0018789.1_g000001 Rmu_ssc0000470.1_g000027
rosa_roxburghii	Rroxscaffold_1G00005100
rosa_rugosa	Rorug05G0450500
rosa_samantha	Rh5AG505100 Rh5BG416900 Rh5BG526800 Rh5CG441400 Rh5CG550600 Rh5DG539000 Rh6AG352200 Rh6CG162900 Rh6DG154500
rosa_wichuraiana	Rw5G047130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	190, 528
AccI	GTMKAC	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	621
AciI	CCGC	5 cut(s)	200, 266, 371, 488, 699
AclWI	GGATC	2 cut(s)	632, 744
AcsI	RAATTY	2 cut(s)	611, 685
AcuI	CTGAAG	2 cut(s)	161, 603
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	325, 440, 685
AjiI	CACGTC	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	4 cut(s)	170, 185, 414, 513
AluI	AGCT	4 cut(s)	170, 185, 414, 513
Alw26I	GTCTC	3 cut(s)	86, 505, 671
AlwI	GGATC	2 cut(s)	632, 744
Aor13HI	TCCGGA	1 cut(s)	621
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	611, 685
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	276
BanI	GGYRCC	2 cut(s)	190, 528
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	3 cut(s)	475, 590, 760
BciT130I	CCWGG	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	3 cut(s)	86, 505, 671
BfaI	CTAG	2 cut(s)	240, 407
BisI	GCNGC	2 cut(s)	6, 267
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	2 cut(s)	7, 268
Bme1390I	CCNGG	2 cut(s)	195, 550
Bme18I	GGWCC	1 cut(s)	197
BmgBI	CACGTC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	192, 311, 530
BmrFI	CCNGG	2 cut(s)	195, 550
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	26, 709
BmuI	ACTGGG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	509
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	550
Bsa29I	ATCGAT	1 cut(s)	627
BsaI	GGTCTC	3 cut(s)	86, 505, 671
BsaWI	WCCGGW	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	525
Bse1I	ACTGG	1 cut(s)	235
Bse21I	CCTNAGG	1 cut(s)	276
BseAI	TCCGGA	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	627
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	2 cut(s)	140, 345
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	566
BshNI	GGYRCC	2 cut(s)	190, 528
BshVI	ATCGAT	1 cut(s)	627
BsiSI	CCGG	3 cut(s)	526, 550, 622
BslFI	GGGAC	2 cut(s)	248, 755
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	3 cut(s)	86, 505, 671
BsmFI	GGGAC	2 cut(s)	248, 755
Bso31I	GGTCTC	3 cut(s)	86, 505, 671
Bsp13I	TCCGGA	1 cut(s)	621
Bsp143I	GATC	4 cut(s)	136, 624, 690, 736
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	5 cut(s)	200, 266, 371, 488, 699
BspCNI	CTCAG	2 cut(s)	139, 346
BspDI	ATCGAT	1 cut(s)	627
BspEI	TCCGGA	1 cut(s)	621
BspLI	GGNNCC	3 cut(s)	192, 311, 530
BspPI	GGATC	2 cut(s)	632, 744
BspT107I	GGYRCC	2 cut(s)	190, 528
BspTNI	GGTCTC	3 cut(s)	86, 505, 671
BsrFI	RCCGGY	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	525
BssMI	GATC	4 cut(s)	136, 624, 690, 736
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	4 cut(s)	66, 207, 533, 755
Bst6I	CTCTTC	2 cut(s)	474, 483
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	15, 264
BstDEI	CTNAG	6 cut(s)	126, 276, 297, 354, 415, 509
BstF5I	GGATG	1 cut(s)	17
BstKTI	GATC	4 cut(s)	139, 627, 693, 739
BstMAI	GTCTC	3 cut(s)	86, 505, 671
BstMBI	GATC	4 cut(s)	136, 624, 690, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 108, 167
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	2 cut(s)	193, 548
Bsu15I	ATCGAT	1 cut(s)	627
Bsu36I	CCTNAGG	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	627
BtgZI	GCGATG	1 cut(s)	65
BtrI	CACGTC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	15, 264
Cfr10I	RCCGGY	1 cut(s)	525
Cfr13I	GGNCC	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	627
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	2 cut(s)	659, 723
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	6 cut(s)	126, 276, 297, 354, 415, 509
DpnI	GATC	4 cut(s)	138, 626, 692, 738
DpnII	GATC	4 cut(s)	136, 624, 690, 736
DraI	TTTAAA	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	474, 483
EarI	CTCTTC	2 cut(s)	474, 483
EciI	GGCGGA	2 cut(s)	477, 688
Eco31I	GGTCTC	3 cut(s)	86, 505, 671
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	2 cut(s)	161, 603
Eco81I	CCTNAGG	1 cut(s)	276
EcoRI	GAATTC	2 cut(s)	611, 685
EcoRII	CCWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	724
FaeI	CATG	2 cut(s)	662, 726
FaiI	YATR	6 cut(s)	143, 335, 402, 618, 660, 724
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	2 cut(s)	248, 755
FatI	CATG	2 cut(s)	658, 722
FblI	GTMKAC	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	6, 267
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	2 cut(s)	6, 267
FspBI	CTAG	2 cut(s)	240, 407
GluI	GCNGC	2 cut(s)	6, 267
HapII	CCGG	3 cut(s)	526, 550, 622
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	662, 726
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	3 cut(s)	526, 550, 622
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	5 cut(s)	129, 180, 211, 556, 759
Hpy188III	TCNNGA	6 cut(s)	32, 134, 437, 622, 668, 740
Hpy8I	GTNNAC	1 cut(s)	378
Hpy99I	CGWCG	4 cut(s)	150, 496, 611, 644
HpyAV	CCTTC	4 cut(s)	40, 88, 92, 383
HpyCH4III	ACNGT	4 cut(s)	66, 207, 533, 755
HpyCH4IV	ACGT	2 cut(s)	148, 428
HpyCH4V	TGCA	5 cut(s)	8, 17, 246, 722, 765
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 108, 167
HpyF3I	CTNAG	6 cut(s)	126, 276, 297, 354, 415, 509
HpySE526I	ACGT	2 cut(s)	148, 428
Hsp92II	CATG	2 cut(s)	662, 726
Kpn2I	TCCGGA	1 cut(s)	621
Kzo9I	GATC	4 cut(s)	136, 624, 690, 736
LmnI	GCTCC	1 cut(s)	518
LweI	GCATC	2 cut(s)	26, 709
MaeI	CTAG	2 cut(s)	240, 407
MaeII	ACGT	2 cut(s)	148, 428
MaeIII	GTNAC	2 cut(s)	424, 429
MalI	GATC	4 cut(s)	138, 626, 692, 738
MboI	GATC	4 cut(s)	136, 624, 690, 736
MboII	GAAGA	6 cut(s)	55, 461, 470, 473, 596, 602
MluCI	AATT	3 cut(s)	611, 685, 748
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	724
MroI	TCCGGA	1 cut(s)	621
MseI	TTAA	2 cut(s)	164, 786
MspI	CCGG	3 cut(s)	526, 550, 622
MspR9I	CCNGG	2 cut(s)	195, 550
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	14, 108, 167
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	4 cut(s)	136, 624, 690, 736
NlaIII	CATG	2 cut(s)	662, 726
NlaIV	GGNNCC	3 cut(s)	192, 311, 530
NmuCI	GTSAC	1 cut(s)	429
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	7, 268
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	192, 311, 530
PspPI	GGNCC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	164, 786
SatI	GCNGC	2 cut(s)	6, 267
Sau3AI	GATC	4 cut(s)	136, 624, 690, 736
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	195, 550
SfaNI	GCATC	2 cut(s)	26, 709
SinI	GGWCC	1 cut(s)	197
Sse9I	AATT	3 cut(s)	611, 685, 748
SsiI	CCGC	5 cut(s)	200, 266, 371, 488, 699
SspMI	CTAG	2 cut(s)	240, 407
StyD4I	CCNGG	2 cut(s)	193, 548
TaaI	ACNGT	4 cut(s)	66, 207, 533, 755
TaiI	ACGT	2 cut(s)	151, 431
TaqI	TCGA	4 cut(s)	609, 627, 669, 689
TasI	AATT	3 cut(s)	611, 685, 748
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	164, 786
Tru9I	TTAA	2 cut(s)	164, 786
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	1 cut(s)	603
TspGWI	ACGGA	2 cut(s)	74, 401
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	611, 685
XceI	RCATGY	1 cut(s)	726
XmiI	GTMKAC	1 cut(s)	377
XspI	CTAG	2 cut(s)	240, 407
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.