Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000470.1

Orthogroup ID

OG0005408

Physical Location & Seq

Genomic Coordinates Forward (+)

62101 .. 65370

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000470.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgatcttttgttcaaggtttcccacagacggcgccaatgttaatgctcaaagtccggcggtagccgatctttcgtttaacgcgggtccggtgggcggaccctgtgatctgggggagatcctaggctcggacggtagcccacctggctgtgtctccgccggtcacccccttggtgagattcggtacctctggcagtacaatgagctgcccacatccttcgtcggatccgtcttctacaactcccccatccgcttcttcgacctcgactccaacaccaccgcctccttctccacccgctttaccttctcattctccaacctcaacccctcctccttctgcgacgacatgtcatttttcctctcccctaacaaccaaaccctcggcagctccggcaactatctgggtctagtcaactcctcccaatggacccaaaacaagttcatcgccatcgaattcgatacccagcaagatacccactttgccgacccgaacgacaaccatgtgggtcttgacatcgatagcctgttctcgatcaagaccgcagacccgattgaccaagaagttgacttgaagagcggcatggccatcatggcatggatctaccagcaactcctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

205

Amino Acids

22.37

Weight (kDa)

4.07

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55830
fragaria_vesca	FvH4_2g31170 FvH4_3g42990 FvH4_4g09342 FvH4_4g11641
malus_domestica	MD03G1026600.v1.1 MD11G1030600.v1.1
prunus_persica	Prupe.6G024000_v2.0.a1
pyrus_communis	pycom03g02180 pycom11g02420 pycom11g02430 pycom11g02480
rosa_chinensis	RchiOBHm_Chr5g0077031
rosa_laevigata	RLG00000036643
rosa_multiflora	Rmu_sc0003323.1_g000008 Rmu_sc0018789.1_g000001 Rmu_ssc0000470.1_g000027
rosa_roxburghii	Rroxscaffold_1G00005100
rosa_rugosa	Rorug05G0450500
rosa_samantha	Rh5AG505100 Rh5BG416900 Rh5BG526800 Rh5CG441400 Rh5CG550600 Rh5DG539000 Rh6AG352200 Rh6CG162900 Rh6DG154500
rosa_wichuraiana	Rw5G047130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	2 cut(s)	32, 183
AccBSI	CCGCTC	1 cut(s)	576
AccII	CGCG	1 cut(s)	83
AciI	CCGC	9 cut(s)	59, 83, 96, 156, 250, 279, 295, 540, 576
AclWI	GGATC	4 cut(s)	112, 219, 232, 605
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	185, 197
AfiI	CCNNNNNNNGG	4 cut(s)	29, 95, 127, 423
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	15, 571
AhdI	GACNNNNNGTC	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	205, 387
AluI	AGCT	2 cut(s)	205, 387
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	4 cut(s)	112, 219, 232, 605
AoxI	GGCC	1 cut(s)	582
ApeKI	GCWGC	2 cut(s)	205, 384
ApoI	RAATTY	1 cut(s)	452
Asp718I	GGTACC	1 cut(s)	183
AspA2I	CCTAGG	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	86, 98, 426
AsuHPI	GGTGA	2 cut(s)	155, 185
AvaII	GGWCC	3 cut(s)	86, 98, 426
AvrII	CCTAGG	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	224
BanI	GGYRCC	2 cut(s)	32, 183
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	192, 396
BccI	CCATC	3 cut(s)	254, 455, 593
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	122, 407
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	2 cut(s)	144, 590
BisI	GCNGC	3 cut(s)	206, 385, 577
BlnI	CCTAGG	1 cut(s)	121
BlsI	GCNGC	3 cut(s)	207, 386, 578
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	3 cut(s)	86, 98, 426
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	86, 98, 426
BmiI	GGNNCC	6 cut(s)	34, 87, 100, 185, 226, 428
BmrFI	CCNGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	223
Bsa29I	ATCGAT	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	121, 169, 379
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 314, 344
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 95, 127, 423
Bse118I	RCCGGY	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	121, 169, 379
BseGI	GGATG	2 cut(s)	212, 246
BseLI	CCNNNNNNNGG	4 cut(s)	29, 95, 127, 423
BseRI	GAGGAG	2 cut(s)	319, 406
BseXI	GCAGC	2 cut(s)	192, 396
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	584
BshNI	GGYRCC	2 cut(s)	32, 183
BshVI	ATCGAT	1 cut(s)	516
BsiSI	CCGG	4 cut(s)	56, 89, 159, 390
BslI	CCNNNNNNNGG	4 cut(s)	29, 95, 127, 423
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	584
Bsp143I	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
BspACI	CCGC	9 cut(s)	59, 83, 96, 156, 250, 279, 295, 540, 576
BspANI	GGCC	1 cut(s)	584
BspDI	ATCGAT	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	6 cut(s)	34, 87, 100, 185, 226, 428
BspPI	GGATC	4 cut(s)	112, 219, 232, 605
BspQI	GCTCTTC	1 cut(s)	566
BspT107I	GGYRCC	2 cut(s)	32, 183
BsrBI	CCGCTC	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	121, 169, 379
BssMI	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	121, 169
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	212, 246
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	7 cut(s)	6, 70, 109, 120, 227, 534, 600
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 390, 590
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	349
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	192, 396
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	3 cut(s)	117, 224, 597
BstYI	RGATCY	3 cut(s)	117, 224, 597
Bsu15I	ATCGAT	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	584
BsuTUI	ATCGAT	1 cut(s)	516
BtgZI	GCGATG	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	212, 246
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	86, 98, 426
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	184, 196
CviAII	CATG	5 cut(s)	346, 500, 580, 589, 594
CviJI	RGCY	8 cut(s)	65, 126, 138, 147, 205, 387, 522, 584
CviKI_1	RGCY	8 cut(s)	65, 126, 138, 147, 205, 387, 522, 584
CviQI	GTAC	2 cut(s)	184, 196
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	7 cut(s)	5, 69, 108, 119, 226, 533, 599
DpnII	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
DriI	GACNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	566
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	2 cut(s)	111, 145
Eco130I	CCWWGG	2 cut(s)	121, 169
Eco47I	GGWCC	3 cut(s)	86, 98, 426
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	121, 169
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	121, 169
FaeI	CATG	5 cut(s)	349, 503, 583, 592, 597
FaiI	YATR	5 cut(s)	347, 501, 581, 590, 595
FatI	CATG	5 cut(s)	345, 499, 579, 588, 593
FauI	CCCGC	2 cut(s)	76, 302
Fnu4HI	GCNGC	3 cut(s)	206, 385, 577
FokI	GGATG	2 cut(s)	199, 233
Fsp4HI	GCNGC	3 cut(s)	206, 385, 577
FspBI	CTAG	2 cut(s)	122, 407
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	3 cut(s)	206, 385, 577
GsaI	CCCAGC	1 cut(s)	466
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	584
HapII	CCGG	4 cut(s)	56, 89, 159, 390
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	349, 503, 583, 592, 597
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	2 cut(s)	412, 565
HindII	GTYRAC	2 cut(s)	412, 565
HinfI	GANTC	2 cut(s)	178, 266
HpaII	CCGG	4 cut(s)	56, 89, 159, 390
HphI	GGTGA	2 cut(s)	155, 185
Hpy166II	GTNNAC	2 cut(s)	412, 565
Hpy188I	TCNGA	2 cut(s)	130, 224
Hpy188III	TCNNGA	3 cut(s)	509, 529, 535
Hpy8I	GTNNAC	2 cut(s)	412, 565
Hpy99I	CGWCG	2 cut(s)	224, 344
HpyAV	CCTTC	4 cut(s)	226, 295, 313, 343
HpyCH4III	ACNGT	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 390, 590
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	349, 503, 583, 592, 597
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	187
Kzo9I	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	2 cut(s)	192, 396
MaeI	CTAG	2 cut(s)	122, 407
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	7 cut(s)	5, 69, 108, 119, 226, 533, 599
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
MboII	GAAGA	3 cut(s)	223, 247, 583
MflI	RGATCY	3 cut(s)	117, 224, 597
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	584
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	3 cut(s)	202, 294, 339
MnlI	CCTC	9 cut(s)	197, 272, 292, 329, 337, 340, 368, 389, 427
Mox20I	TGGCCA	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	2 cut(s)	42, 78
Msp20I	TGGCCA	1 cut(s)	584
MspI	CCGG	4 cut(s)	56, 89, 159, 390
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	144, 390, 590
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
NlaIII	CATG	5 cut(s)	349, 503, 583, 592, 597
NlaIV	GGNNCC	6 cut(s)	34, 87, 100, 185, 226, 428
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	349
PciI	ACATGT	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	207, 386, 578
PleI	GAGTC	1 cut(s)	260
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	6 cut(s)	34, 87, 100, 185, 226, 428
PspPI	GGNCC	3 cut(s)	86, 98, 426
PsuI	RGATCY	3 cut(s)	117, 224, 597
RsaI	GTAC	2 cut(s)	185, 197
RsaNI	GTAC	2 cut(s)	184, 196
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	42, 78
SatI	GCNGC	3 cut(s)	206, 385, 577
Sau3AI	GATC	7 cut(s)	3, 67, 106, 117, 224, 531, 597
Sau96I	GGNCC	3 cut(s)	86, 98, 426
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	8 cut(s)	20, 145, 189, 207, 264, 305, 321, 389
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	3 cut(s)	86, 98, 426
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	9 cut(s)	59, 83, 96, 156, 250, 279, 295, 540, 576
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	122, 407
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	2 cut(s)	121, 169
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	6 cut(s)	258, 264, 450, 456, 516, 530
TasI	AATT	1 cut(s)	452
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	2 cut(s)	42, 78
Tru9I	TTAA	2 cut(s)	42, 78
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	205, 384
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	430
TspGWI	ACGGA	1 cut(s)	217
VpaK11BI	GGWCC	3 cut(s)	86, 98, 426
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	349
XmaJI	CCTAGG	1 cut(s)	121
XspI	CTAG	2 cut(s)	122, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.