Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005408

Physical Location & Seq

Genomic Coordinates Reverse (-)

61325439 .. 61329923

Gene Structure 4485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG441400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCCGCCGGACAACAAAACCCGTGGTAGCCCATGTCGGTATCTGGGTTTAGTCAAGTCCTCTCTGATGACCAAGAACAAGTTCGTCGCCGTCGAATTCGATACCCGACTTGATTTACACTTACACAACTCGAATGGTTACCATGTGGGTCTCTACATTGAGAGCTTGAATTCGATTGAGCAAGATGTGGATTTGCGGAGCAGGACAACGATCACAGCCTGGTTTGCAGATATACCGTTCCAACATGTTTACAAAGCTTTGATCTTTCAAACACAGAACAAGTCAGAGCGAGCCAGAGAAGTAAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

103

Amino Acids

11.86

Weight (kDa)

8.82

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	7 - 74	9.7e-11	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55830
fragaria_vesca	FvH4_2g31170 FvH4_3g42990 FvH4_4g09342 FvH4_4g11641
malus_domestica	MD03G1026600.v1.1 MD11G1030600.v1.1
prunus_persica	Prupe.6G024000_v2.0.a1
pyrus_communis	pycom03g02180 pycom11g02420 pycom11g02430 pycom11g02480
rosa_chinensis	RchiOBHm_Chr5g0077031
rosa_laevigata	RLG00000036643
rosa_multiflora	Rmu_sc0003323.1_g000008 Rmu_sc0018789.1_g000001 Rmu_ssc0000470.1_g000027
rosa_roxburghii	Rroxscaffold_1G00005100
rosa_rugosa	Rorug05G0450500
rosa_samantha	Rh5AG505100 Rh5BG416900 Rh5BG526800 Rh5CG441400 Rh5CG550600 Rh5DG539000 Rh6AG352200 Rh6CG162900 Rh6DG154500
rosa_wichuraiana	Rw5G047130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 196
AcsI	RAATTY	2 cut(s)	95, 169
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	169, 269
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	2 cut(s)	165, 257
AluI	AGCT	2 cut(s)	165, 257
Alw26I	GTCTC	1 cut(s)	155
ApoI	RAATTY	2 cut(s)	95, 169
Asp700I	GAANNNNTTC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	155
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	210, 261
BspACI	CCGC	2 cut(s)	5, 196
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	2 cut(s)	210, 261
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	22
BstEII	GGTNACC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	213, 264
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	210, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	248
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	291
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	3 cut(s)	33, 143, 245
CviJI	RGCY	5 cut(s)	30, 165, 218, 257, 293
CviKI_1	RGCY	5 cut(s)	30, 165, 218, 257, 293
DpnI	GATC	2 cut(s)	212, 263
DpnII	GATC	2 cut(s)	210, 261
Eco31I	GGTCTC	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	2 cut(s)	95, 169
EcoRII	CCWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	3 cut(s)	36, 146, 248
FaiI	YATR	5 cut(s)	34, 144, 233, 246, 310
FatI	CATG	3 cut(s)	32, 142, 244
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	3 cut(s)	36, 146, 248
HindIII	AAGCTT	1 cut(s)	255
HpaII	CCGG	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	66, 286
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	2 cut(s)	89, 95
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	227, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	36, 146, 248
Kzo9I	GATC	2 cut(s)	210, 261
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	6 cut(s)	21, 29, 187, 205, 232, 307
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	212, 263
MboI	GATC	2 cut(s)	210, 261
MluCI	AATT	2 cut(s)	95, 169
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	1 cut(s)	70
Mph1103I	ATGCAT	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	80
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	2 cut(s)	210, 261
NlaIII	CATG	3 cut(s)	36, 146, 248
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	1 cut(s)	248
PciI	ACATGT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	6
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	218
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	218
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	210, 261
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	2 cut(s)	167, 259
Sse9I	AATT	2 cut(s)	95, 169
SsiI	CCGC	2 cut(s)	5, 196
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	237
TaqI	TCGA	4 cut(s)	93, 99, 131, 173
TasI	AATT	2 cut(s)	95, 169
TauI	GCSGC	1 cut(s)	7
XapI	RAATTY	2 cut(s)	95, 169
XceI	RCATGY	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.