pycom11g02480

Lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
2081075 .. 2081344
270 bp
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UTR
Exon/CDS
Intron
pycom11g02480.1

Sequence Viewer

Length: 270 bp
ATGCCGAGGTTGCAGCCACACAATGTGTCTGATACTTATGTGGCGGTGAGTCCGAGGATTCCGGTGTCCGGTTCAGGGGATAAGCATCACCGACGGCTCGGTTTGGGACTCGGGATTGCTGGGCCAGCGTTCTTTTGCGTGGCGCTGATGGTTTTCGGTTATGTTTCCGTGATGATATGGATGGAGGTGAGAAAACAGAAGAGCTTCAAAGCAAAGGTGGTGGCAGGGCCAAGAGAGTTTAGTTACAATGAGCTGAAATCTGCCACATGA

Protein Analysis

90

Amino Acids

9.82

Weight (kDa)

10.1

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 68, 75
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 204, 253
AluI AGCT 2 cut(s) 204, 253
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 2 cut(s) 122, 227
ApeKI GCWGC 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 122, 227
AsuHPI GGTGA 3 cut(s) 58, 80, 199
AvaI CYCGRG 1 cut(s) 110
BaeI ACNNNNGTAYC 2 cut(s) 24, 57
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 142, 175
BceAI ACGGC 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 122, 227
BmsI GCATC 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 5, 53
BsaWI WCCGGW 2 cut(s) 61, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 75
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 5, 53
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 2 cut(s) 68, 75
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 119
BshFI GGCC 2 cut(s) 124, 229
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 62, 69
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 68, 75
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 2 cut(s) 124, 229
BsoBI CYCGRG 1 cut(s) 110
BspACI CCGC 1 cut(s) 44
BspANI GGCC 2 cut(s) 124, 229
BspQI GCTCTTC 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 5, 53
Bst6I CTCTTC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 10, 125
BstV1I GCAGC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 124, 229
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 126
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 122, 227
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 1 cut(s) 267
CviJI RGCY 6 cut(s) 16, 97, 124, 204, 229, 253
CviKI_1 RGCY 6 cut(s) 16, 97, 124, 204, 229, 253
DraIII CACNNNGTG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 110
FaeI CATG 1 cut(s) 270
FaiI YATR 4 cut(s) 39, 162, 178, 268
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 14
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 14
GsaI CCCAGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 2 cut(s) 124, 229
HapII CCGG 2 cut(s) 62, 69
HhaI GCGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 270
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 3 cut(s) 49, 58, 108
HpaII CCGG 2 cut(s) 62, 69
HphI GGTGA 3 cut(s) 58, 80, 199
Hpy188I TCNGA 2 cut(s) 31, 54
Hpy188III TCNNGA 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 125
Hsp92II CATG 1 cut(s) 270
HspAI GCGC 1 cut(s) 143
LguI GCTCTTC 1 cut(s) 194
LpnPI CCDG 6 cut(s) 60, 75, 82, 105, 138, 210
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 242
MboII GAAGA 1 cut(s) 211
MlyI GAGTC 2 cut(s) 58, 102
MnlI CCTC 2 cut(s) 48, 178
MroXI GAANNNNTTC 1 cut(s) 203
MspI CCGG 2 cut(s) 62, 69
MwoI GCNNNNNNNGC 2 cut(s) 10, 125
NlaIII CATG 1 cut(s) 270
NmeAIII GCCGAG 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 2 cut(s) 57, 102
PpsI GAGTC 2 cut(s) 57, 102
PspFI CCCAGC 1 cut(s) 119
PspPI GGNCC 2 cut(s) 122, 227
SapI GCTCTTC 1 cut(s) 194
SatI GCNGC 1 cut(s) 14
Sau96I GGNCC 2 cut(s) 122, 227
SchI GAGTC 2 cut(s) 58, 102
SetI ASST 5 cut(s) 11, 189, 206, 219, 255
SfaNI GCATC 1 cut(s) 94
SsiI CCGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 58
TseI GCWGC 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.