Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005408

Physical Location & Seq

Genomic Coordinates Forward (+)

62379011 .. 62379756

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0450500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGAGAGGCAGAGAAGATGATCAGCAGACCCTGGATTTGGTCAATTGTTTGATGCTACTATCCAAAGTAGACCAAAATGACTCCTCCTCAATCAAAAAACAAAAGATCTCGGACCGTGTCTTTGTTTGTAAGACGTGTAATCGGGAGTTCTCGTCGTTCCAAGCCCTCGGAGGCCATAGAGCGAGCCACAAGAAACCGAGCGGTGCAGACCAGTTACAGCTTGCACAGCCGAGCTCGCCGGCAAAGCCCAAGAAGCACGGGTGTCCGATCTGCGGGATGGAATTCGCAGTTGGTCAAGCGCTTGGGGGACACATGAGGAGACATAGAGATGTTATGAGTTCTGCTGCGGAAAGGATTCGAGCGGCAGCTGTGCCGGTATTGAAGAAATCAAATAGTAGTAAAAGGGTATCGTGCTTGAATCTGGATTTGAATTTGGCACCGCCGGGATATCCGCATCTTTATGATTTGACAGAGTTGCAGTTAACTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.03

Weight (kDa)

9.56

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 67	1.9e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	87 - 111	4.5e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55830
fragaria_vesca	FvH4_2g31170 FvH4_3g42990 FvH4_4g09342 FvH4_4g11641
malus_domestica	MD03G1026600.v1.1 MD11G1030600.v1.1
prunus_persica	Prupe.6G024000_v2.0.a1
pyrus_communis	pycom03g02180 pycom11g02420 pycom11g02430 pycom11g02480
rosa_chinensis	RchiOBHm_Chr5g0077031
rosa_laevigata	RLG00000036643
rosa_multiflora	Rmu_sc0003323.1_g000008 Rmu_sc0018789.1_g000001 Rmu_ssc0000470.1_g000027
rosa_roxburghii	Rroxscaffold_1G00005100
rosa_rugosa	Rorug05G0450500
rosa_samantha	Rh5AG505100 Rh5BG416900 Rh5BG526800 Rh5CG441400 Rh5CG550600 Rh5DG539000 Rh6AG352200 Rh6CG162900 Rh6DG154500
rosa_wichuraiana	Rw5G047130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	439
AccBSI	CCGCTC	2 cut(s)	204, 365
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	6 cut(s)	204, 276, 350, 365, 443, 455
AcsI	RAATTY	2 cut(s)	284, 433
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	40, 275
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	385, 421, 433
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	3 cut(s)	223, 237, 371
AluI	AGCT	3 cut(s)	223, 237, 371
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	34
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	347, 368
ApoI	RAATTY	2 cut(s)	284, 433
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 107, 139
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	334, 380
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	35
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	305
BglII	AGATCT	1 cut(s)	108
BisI	GCNGC	3 cut(s)	348, 366, 369
BlsI	GCNGC	3 cut(s)	349, 367, 370
Bme1390I	CCNGG	2 cut(s)	35, 447
Bme18I	GGWCC	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	35, 447
BmsI	GCATC	2 cut(s)	45, 466
BpuMI	CCSGG	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	33, 169
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 275
Bse118I	RCCGGY	2 cut(s)	241, 376
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	33, 169
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	40, 275
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	3 cut(s)	76, 79, 334
BseXI	GCAGC	2 cut(s)	334, 380
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	242, 377, 446
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	40, 275
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	22, 108, 270
BspACI	CCGC	6 cut(s)	204, 276, 350, 365, 443, 455
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	439
BsrBI	CCGCTC	2 cut(s)	204, 365
BsrFI	RCCGGY	2 cut(s)	241, 376
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	2 cut(s)	241, 376
BssECI	CCNNGG	2 cut(s)	33, 169
BssMI	GATC	3 cut(s)	22, 108, 270
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	187, 225, 239, 243
BstF5I	GGATG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	3 cut(s)	25, 111, 273
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	3 cut(s)	22, 108, 270
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 238, 247, 256
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	33, 445
BstV1I	GCAGC	2 cut(s)	334, 380
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	285
Cac8I	GCNNGC	4 cut(s)	187, 225, 239, 243
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	241, 376
Cfr13I	GGNCC	1 cut(s)	115
CpoI	CGGWCCG	1 cut(s)	115
CspI	CGGWCCG	1 cut(s)	115
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	8 cut(s)	167, 177, 189, 223, 232, 237, 250, 371
CviKI_1	RGCY	8 cut(s)	167, 177, 189, 223, 232, 237, 250, 371
DpnI	GATC	3 cut(s)	24, 110, 272
DpnII	GATC	3 cut(s)	22, 108, 270
Ecl136II	GAGCTC	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	115
Eco47III	AGCGCT	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	452
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	1 cut(s)	319
FaiI	YATR	5 cut(s)	180, 317, 327, 338, 465
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	269
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	348, 366, 369
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	348, 366, 369
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	3 cut(s)	348, 366, 369
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	3 cut(s)	242, 377, 446
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	3 cut(s)	83, 358, 421
HpaI	GTTAAC	1 cut(s)	486
HpaII	CCGG	3 cut(s)	242, 377, 446
Hpy166II	GTNNAC	2 cut(s)	73, 486
Hpy188I	TCNGA	3 cut(s)	115, 173, 270
Hpy188III	TCNNGA	2 cut(s)	146, 425
Hpy8I	GTNNAC	2 cut(s)	73, 486
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	209, 227, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 238, 247, 256
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	302
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	22, 108, 270
LpnPI	CCDG	7 cut(s)	20, 47, 227, 255, 390, 410, 459
Lsp1109I	GCAGC	2 cut(s)	334, 380
LweI	GCATC	2 cut(s)	45, 466
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	3 cut(s)	24, 110, 272
MbiI	CCGCTC	2 cut(s)	204, 365
MboI	GATC	3 cut(s)	22, 108, 270
MboII	GAAGA	3 cut(s)	16, 29, 397
MfeI	CAATTG	1 cut(s)	46
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	3 cut(s)	46, 284, 433
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	5 cut(s)	97, 100, 167, 179, 312
MroNI	GCCGGC	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	485, 493
MslI	CAYNNNNRTG	2 cut(s)	330, 462
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	3 cut(s)	242, 377, 446
MspR9I	CCNGG	2 cut(s)	35, 447
MunI	CAATTG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	229, 238, 247, 256
NaeI	GCCGGC	1 cut(s)	243
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	3 cut(s)	22, 108, 270
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	441
NmeAIII	GCCGAG	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	358, 421
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	349, 367, 370
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	108
PsyI	GACNNNGTC	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	371
RseI	CAYNNNNRTG	2 cut(s)	330, 462
Rsr2I	CGGWCCG	1 cut(s)	115
RsrII	CGGWCCG	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	485, 493
SatI	GCNGC	3 cut(s)	348, 366, 369
Sau3AI	GATC	3 cut(s)	22, 108, 270
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	35, 447
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	4 cut(s)	140, 225, 239, 373
SfaNI	GCATC	2 cut(s)	45, 466
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	2 cut(s)	330, 462
Sse9I	AATT	3 cut(s)	46, 284, 433
SsiI	CCGC	6 cut(s)	204, 276, 350, 365, 443, 455
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	33, 445
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	361
TasI	AATT	3 cut(s)	46, 284, 433
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	358, 421
Tru1I	TTAA	2 cut(s)	485, 493
Tru9I	TTAA	2 cut(s)	485, 493
TseI	GCWGC	2 cut(s)	347, 368
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	2 cut(s)	284, 433
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.