Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003455

Physical Location & Seq

Genomic Coordinates Forward (+)

25631334 .. 25631621

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGACGATTAAGAGCAAGTGTGTAGCTAGTGATGGCAAACGTGTTATGACCACCGAGGAGTTGAAGAAGTGGCTGAAGAAATTTGATACTGATAAAGATGGCCGTATAAGCAAAGAGGAACTCCGCCAGGCTATCCGCTCCACCGGCGGACGCTTTGCCACGCTCAAGAGCCGGCGTGGGTTACGATCCGCTGATGTCGATCAAGACGGCTACATAGGTGAAGAAGAGCTCGACAACCTTGTTGAGTTTGCACAGAAGCATTTGGGTGTCAAAATTATACACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

96

Amino Acids

10.86

Weight (kDa)

9.33

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	12 - 45	1.6e-07	EF-hand domain pair
EF-hand_1	PF00036	20 - 47	3.9e-08	EF hand domain
EF-hand_6	PF13405	20 - 49	2.9e-08	EF-hand domain
EF-hand_5	PF13202	21 - 43	1e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003455)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15920 FvH4_2g34550
prunus_persica	Prupe.1G437300_v2.0.a1 Prupe.7G134600_v2.0.a1
pyrus_communis	pycom02g13750 pycom08g08390 pycom15g24590
rosa_chinensis	RchiOBHm_Chr2g0105311 RchiOBHm_Chr5g0048521 RchiOBHm_Chr5g0048531 RchiOBHm_Chr6g0307621 RchiOBHm_Chr6g0307791
rosa_laevigata	RLG00000017415
rosa_multiflora	Rmu_sc0000031.1_g000032 Rmu_sc0001407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00033280 Rroxscaffold_2G00138310
rosa_rugosa	Rorug02G0127500 Rorug06G0361000
rosa_samantha	Rh2AG178100 Rh2BG186500 Rh2CG182700 Rh2DG184100 Rh5AG319000 Rh5BG329200 Rh5BG329400 Rh5CG355100 Rh5DG340400 Rh5DG340600 Rh6AG470000 Rh6BG480500 Rh6CG486200 Rh6DG472600
rosa_wichuraiana	Rw5G029830 Rw5G029970 Rw6G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	138
AciI	CCGC	4 cut(s)	124, 136, 147, 189
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	26, 229
AluI	AGCT	2 cut(s)	26, 229
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	180
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	2 cut(s)	26, 92
BceAI	ACGGC	2 cut(s)	87, 223
BciT130I	CCWGG	1 cut(s)	128
BfaI	CTAG	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	54
Bse118I	RCCGGY	2 cut(s)	143, 171
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	54
BseJI	GATNNNNATC	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	144, 172
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	185, 199
BspACI	CCGC	4 cut(s)	124, 136, 147, 189
BspANI	GGCC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	180
BspQI	GCTCTTC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	143, 171
BssAI	RCCGGY	2 cut(s)	143, 171
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	185, 199
Bst2UI	CCWGG	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	188, 202
BstMBI	GATC	2 cut(s)	185, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 144
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	173
Cfr10I	RCCGGY	2 cut(s)	143, 171
CseI	GACGC	1 cut(s)	159
CviJI	RGCY	7 cut(s)	26, 73, 102, 131, 171, 210, 229
CviKI_1	RGCY	7 cut(s)	26, 73, 102, 131, 171, 210, 229
DpnI	GATC	2 cut(s)	187, 201
DpnII	GATC	2 cut(s)	185, 199
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	2 cut(s)	113, 162
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	231
FaiI	YATR	4 cut(s)	47, 107, 215, 278
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	144, 172
HgaI	GACGC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	144, 172
HphI	GGTGA	1 cut(s)	230
Hpy188III	TCNNGA	2 cut(s)	166, 203
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 144
HpySE526I	ACGT	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	171
KroNI	GCCGGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	185, 199
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	4 cut(s)	113, 140, 157, 185
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	2 cut(s)	187, 201
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	185, 199
MboII	GAAGA	4 cut(s)	76, 88, 233, 236
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	80, 273
MnlI	CCTC	2 cut(s)	49, 109
MroNI	GCCGGC	1 cut(s)	171
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	144, 172
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	108, 144
NaeI	GCCGGC	1 cut(s)	173
NdeII	GATC	2 cut(s)	185, 199
NgoMIV	GCCGGC	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	185, 199
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	28, 43, 220, 231, 240
SgrAI	CRCCGGYG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	80, 273
SsiI	CCGC	4 cut(s)	124, 136, 147, 189
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	198, 231
TasI	AATT	2 cut(s)	80, 273
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
XapI	RAATTY	1 cut(s)	80
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.