Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003455

Physical Location & Seq

Genomic Coordinates Reverse (-)

10342808 .. 10343104

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCATAGTGTGTTGCATGCAGGTGCAGCCTGACCAGGATATGACGGTGGACGAATTCAAAGCATGGATTTCCCGGTTTGACAGTGATCACAACGGTCAGATTAAACGCGAGGAGCTGAAAGAGGCTCTTGGCAGCCTAAGGGCTTGGTTCGGGTGGTGGAGAGCTCGTCAAGGAATGAAGGCGGCAGATTTCAACGGCAATGGCCAAATCGAAAATGCCAAAGAGTTTGAGAAGCTTGTGAACTATGCACAGCAGCGTTTGGGCATGAAAATTCATGAAAATAATGAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

99

Amino Acids

11.52

Weight (kDa)

5.65

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003455)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15920 FvH4_2g34550
prunus_persica	Prupe.1G437300_v2.0.a1 Prupe.7G134600_v2.0.a1
pyrus_communis	pycom02g13750 pycom08g08390 pycom15g24590
rosa_chinensis	RchiOBHm_Chr2g0105311 RchiOBHm_Chr5g0048521 RchiOBHm_Chr5g0048531 RchiOBHm_Chr6g0307621 RchiOBHm_Chr6g0307791
rosa_laevigata	RLG00000017415
rosa_multiflora	Rmu_sc0000031.1_g000032 Rmu_sc0001407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00033280 Rroxscaffold_2G00138310
rosa_rugosa	Rorug02G0127500 Rorug06G0361000
rosa_samantha	Rh2AG178100 Rh2BG186500 Rh2CG182700 Rh2DG184100 Rh5AG319000 Rh5BG329200 Rh5BG329400 Rh5CG355100 Rh5DG340400 Rh5DG340600 Rh6AG470000 Rh6BG480500 Rh6CG486200 Rh6DG472600
rosa_wichuraiana	Rw5G029830 Rw5G029970 Rw6G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	13
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	3, 205
AcsI	RAATTY	2 cut(s)	56, 273
AgsI	TTSAA	2 cut(s)	61, 196
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	118, 167, 238
AluI	AGCT	3 cut(s)	118, 167, 238
Alw21I	GWGCWC	1 cut(s)	169
AoxI	GGCC	2 cut(s)	3, 205
ApeKI	GCWGC	3 cut(s)	28, 135, 256
ApoI	RAATTY	2 cut(s)	56, 273
AsuC2I	CCSGG	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	140
BalI	TGGCCA	2 cut(s)	5, 207
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	40, 147, 268
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	13
BisI	GCNGC	4 cut(s)	29, 136, 186, 257
BlsI	GCNGC	4 cut(s)	30, 137, 187, 258
Bme1390I	CCNGG	2 cut(s)	38, 76
BmrFI	CCNGG	2 cut(s)	38, 76
BpuMI	CCSGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bse21I	CCTNAGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	40, 147, 268
BsgI	GTGCAG	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	5, 207
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	76
BsnI	GGCC	2 cut(s)	5, 207
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	5, 207
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	208
BssMI	GATC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	49, 86, 98
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	36, 74
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	40, 147, 268
Bsu36I	CCTNAGG	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	5, 207
BtsIMutI	CAGTG	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	277
CviAII	CATG	4 cut(s)	19, 66, 268, 278
CviJI	RGCY	9 cut(s)	5, 31, 118, 128, 138, 146, 167, 207, 238
CviKI_1	RGCY	9 cut(s)	5, 31, 118, 128, 138, 146, 167, 207, 238
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EaeI	YGGCCR	2 cut(s)	3, 205
Ecl136II	GAGCTC	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	167
Eco81I	CCTNAGG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	4 cut(s)	22, 69, 271, 281
FaiI	YATR	7 cut(s)	8, 20, 44, 67, 249, 269, 279
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	4 cut(s)	18, 65, 267, 277
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	29, 136, 186, 257
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	29, 136, 186, 257
GluI	GCNGC	4 cut(s)	29, 136, 186, 257
HaeIII	GGCC	2 cut(s)	5, 207
HapII	CCGG	1 cut(s)	76
Hin1II	CATG	4 cut(s)	22, 69, 271, 281
HindIII	AAGCTT	1 cut(s)	236
HpaII	CCGG	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	52, 244
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	2 cut(s)	52, 244
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	3 cut(s)	49, 86, 98
HpyCH4V	TGCA	4 cut(s)	18, 22, 28, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	4 cut(s)	22, 69, 271, 281
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	5 cut(s)	8, 23, 45, 50, 89
Lsp1109I	GCAGC	3 cut(s)	40, 147, 268
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	169
MlsI	TGGCCA	2 cut(s)	5, 207
MluCI	AATT	2 cut(s)	56, 273
MluNI	TGGCCA	2 cut(s)	5, 207
MnlI	CCTC	2 cut(s)	106, 118
Mox20I	TGGCCA	2 cut(s)	5, 207
MscI	TGGCCA	2 cut(s)	5, 207
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	23
Msp20I	TGGCCA	2 cut(s)	5, 207
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	38, 76
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	4 cut(s)	22, 69, 271, 281
NspI	RCATGY	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	277
PaqCI	CACCTGC	1 cut(s)	13
PkrI	GCNGC	4 cut(s)	30, 137, 187, 258
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	4 cut(s)	29, 136, 186, 257
Sau3AI	GATC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	38, 76
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	4 cut(s)	27, 120, 169, 240
SmiMI	CAYNNNNRTG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	2 cut(s)	56, 273
SsiI	CCGC	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	36, 74
TaaI	ACNGT	3 cut(s)	49, 86, 98
TaqI	TCGA	1 cut(s)	213
TasI	AATT	2 cut(s)	56, 273
TauI	GCSGC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	3 cut(s)	28, 135, 256
TspDTI	ATGAA	4 cut(s)	194, 266, 284, 294
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	56, 273
XceI	RCATGY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.