Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003455

Physical Location & Seq

Genomic Coordinates Forward (+)

76428602 .. 76428898

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCATAATGTGTTGTATTCAGGTGCAGCCTCACCAGGAGATGACAGTGGACGAGTTCAAAGCGTGGCTGCGCCGGTTCGACAATGATCACAATGGACAGATCAGCCGGGAGGAGCTAAAAGAAGCTCTTCACAGCTTGAGGATTTGGTTCGGGTGGTGGAGAAGTCGTCAAGTAATGAAGCAAGCAGACTCCAATAGAGATGGCCAAATAGACAACGCCAAGGAGTTCGAAAAACTGGTGAACTATGCTCAGCAAAATTTGCACATGAAGATTTATGAGAGTAATGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

98

Amino Acids

11.86

Weight (kDa)

6.4

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	19 - 46	2e-06	EF hand domain
EF-hand_6	PF13405	19 - 47	3e-06	EF-hand domain
EF-hand_5	PF13202	20 - 42	4.7e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003455)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15920 FvH4_2g34550
prunus_persica	Prupe.1G437300_v2.0.a1 Prupe.7G134600_v2.0.a1
pyrus_communis	pycom02g13750 pycom08g08390 pycom15g24590
rosa_chinensis	RchiOBHm_Chr2g0105311 RchiOBHm_Chr5g0048521 RchiOBHm_Chr5g0048531 RchiOBHm_Chr6g0307621 RchiOBHm_Chr6g0307791
rosa_laevigata	RLG00000017415
rosa_multiflora	Rmu_sc0000031.1_g000032 Rmu_sc0001407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00033280 Rroxscaffold_2G00138310
rosa_rugosa	Rorug02G0127500 Rorug06G0361000
rosa_samantha	Rh2AG178100 Rh2BG186500 Rh2CG182700 Rh2DG184100 Rh5AG319000 Rh5BG329200 Rh5BG329400 Rh5CG355100 Rh5DG340400 Rh5DG340600 Rh6AG470000 Rh6BG480500 Rh6CG486200 Rh6DG472600
rosa_wichuraiana	Rw5G029830 Rw5G029970 Rw6G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	3, 205
AcsI	RAATTY	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	118, 128, 138
AluI	AGCT	3 cut(s)	118, 128, 138
AoxI	GGCC	2 cut(s)	3, 205
ApeKI	GCWGC	2 cut(s)	28, 70
ApoI	RAATTY	1 cut(s)	259
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	26, 253
AsuII	TTCGAA	1 cut(s)	231
BalI	TGGCCA	2 cut(s)	5, 207
BbvI	GCAGC	2 cut(s)	40, 57
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	110
BisI	GCNGC	2 cut(s)	29, 71
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	2 cut(s)	30, 72
Bme1390I	CCNGG	2 cut(s)	38, 110
BmrFI	CCNGG	2 cut(s)	38, 110
Bpu1102I	GCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	40, 57
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	5, 207
BsiSI	CCGG	2 cut(s)	76, 109
BsnI	GGCC	2 cut(s)	5, 207
Bsp119I	TTCGAA	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	88, 102
Bsp1720I	GCTNAGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	5, 207
BspCNI	CTCAG	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	88, 102
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	91, 105
BstMBI	GATC	2 cut(s)	88, 102
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	36, 108
BstV1I	GCAGC	2 cut(s)	40, 57
BsuRI	GGCC	2 cut(s)	5, 207
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	75
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	8 cut(s)	5, 31, 70, 108, 118, 128, 138, 207
CviKI_1	RGCY	8 cut(s)	5, 31, 70, 108, 118, 128, 138, 207
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	90, 104
DpnII	GATC	2 cut(s)	88, 102
EaeI	YGGCCR	2 cut(s)	3, 205
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	271
FaiI	YATR	4 cut(s)	8, 249, 269, 279
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	29, 71
Fsp4HI	GCNGC	2 cut(s)	29, 71
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	2 cut(s)	29, 71
HaeIII	GGCC	2 cut(s)	5, 207
HapII	CCGG	2 cut(s)	76, 109
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	2 cut(s)	76, 109
HphI	GGTGA	2 cut(s)	26, 253
Hpy166II	GTNNAC	2 cut(s)	52, 244
Hpy8I	GTNNAC	2 cut(s)	52, 244
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	28, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 102
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	6 cut(s)	8, 23, 50, 89, 122, 224
Lsp1109I	GCAGC	2 cut(s)	40, 57
MalI	GATC	2 cut(s)	90, 104
MboI	GATC	2 cut(s)	88, 102
MboII	GAAGA	2 cut(s)	122, 283
MlsI	TGGCCA	2 cut(s)	5, 207
MluCI	AATT	1 cut(s)	259
MluNI	TGGCCA	2 cut(s)	5, 207
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	42, 106, 135
Mox20I	TGGCCA	2 cut(s)	5, 207
MroXI	GAANNNNTTC	1 cut(s)	129
MscI	TGGCCA	2 cut(s)	5, 207
Msp20I	TGGCCA	2 cut(s)	5, 207
MspI	CCGG	2 cut(s)	76, 109
MspR9I	CCNGG	2 cut(s)	38, 110
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	88, 102
NlaIII	CATG	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	30, 72
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	135
SatI	GCNGC	2 cut(s)	29, 71
Sau3AI	GATC	2 cut(s)	88, 102
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	38, 110
SetI	ASST	4 cut(s)	27, 120, 130, 140
SfuI	TTCGAA	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	36, 108
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	81, 231
TasI	AATT	1 cut(s)	259
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	2 cut(s)	28, 70
TspDTI	ATGAA	2 cut(s)	194, 284
TspRI	CASTG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.