Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003455

Physical Location & Seq

Genomic Coordinates Reverse (-)

16342874 .. 16343975

Gene Structure 1102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG184100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTATGTTTTATATCCCACCCATGCAATCCAAATAATCCGATCCAATTCCAATCAATTCAAGCTTTTGCTCATCTACAATTTTCCTTGCATCTCTTCAAATTTTAAGAGACTTTCCAAGCAGATAGAGCAAAAAATCAAAATGGCCATAATGTGTTGTATTCAGGTGCAGCCTCACCAGGAGATGACAGTGGACGAGTTCAAAGCGTGGCTGCGCCGGTTCGACAATGATCACAATGGACAGATCAGCCGGGAGGAGCTAAAAGAAGCTCTTCACAGCTTGAGGATTTGGTTCGGGTGGTGGAGAAGTCGTCAAGTAATGAAGCAAGCAGACTCCAATAGAGATGGCCAAATAGACAACGCCAAGGAATTCGAAAAGCTGGTGAACTATGCTCAGCAAAATTTGCACATGAAGATTTATGAGAGTAATGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

145

Amino Acids

17.47

Weight (kDa)

9.19

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	66 - 93	4.1e-06	EF hand domain
EF-hand_6	PF13405	66 - 94	6.1e-06	EF-hand domain
EF-hand_5	PF13202	67 - 89	9e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003455)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15920 FvH4_2g34550
prunus_persica	Prupe.1G437300_v2.0.a1 Prupe.7G134600_v2.0.a1
pyrus_communis	pycom02g13750 pycom08g08390 pycom15g24590
rosa_chinensis	RchiOBHm_Chr2g0105311 RchiOBHm_Chr5g0048521 RchiOBHm_Chr5g0048531 RchiOBHm_Chr6g0307621 RchiOBHm_Chr6g0307791
rosa_laevigata	RLG00000017415
rosa_multiflora	Rmu_sc0000031.1_g000032 Rmu_sc0001407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00033280 Rroxscaffold_2G00138310
rosa_rugosa	Rorug02G0127500 Rorug06G0361000
rosa_samantha	Rh2AG178100 Rh2BG186500 Rh2CG182700 Rh2DG184100 Rh5AG319000 Rh5BG329200 Rh5BG329400 Rh5CG355100 Rh5DG340400 Rh5DG340600 Rh6AG470000 Rh6BG480500 Rh6CG486200 Rh6DG472600
rosa_wichuraiana	Rw5G029830 Rw5G029970 Rw6G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	2 cut(s)	144, 346
AcsI	RAATTY	3 cut(s)	100, 368, 400
AgsI	TTSAA	3 cut(s)	61, 99, 202
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	64, 259, 269, 279, 379
AluI	AGCT	5 cut(s)	64, 259, 269, 279, 379
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	2 cut(s)	144, 346
ApeKI	GCWGC	2 cut(s)	169, 211
ApoI	RAATTY	3 cut(s)	100, 368, 400
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	167, 394
AsuII	TTCGAA	1 cut(s)	372
BalI	TGGCCA	2 cut(s)	146, 348
BbvI	GCAGC	2 cut(s)	181, 198
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	103
BisI	GCNGC	2 cut(s)	170, 212
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	2 cut(s)	171, 213
Bme1390I	CCNGG	2 cut(s)	179, 251
BmrFI	CCNGG	2 cut(s)	179, 251
BmsI	GCATC	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bse118I	RCCGGY	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	181, 198
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	146, 348
BsiSI	CCGG	2 cut(s)	217, 250
BsmAI	GTCTC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	146, 348
Bsp119I	TTCGAA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	41, 229, 243
Bsp1720I	GCTNAGC	1 cut(s)	393
BspANI	GGCC	2 cut(s)	146, 348
BspCNI	CTCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	276
BspT104I	TTCGAA	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	216
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	3 cut(s)	41, 229, 243
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	100, 276
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	3 cut(s)	44, 232, 246
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	3 cut(s)	41, 229, 243
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 403
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	177, 249
BstV1I	GCAGC	2 cut(s)	181, 198
BsuRI	GGCC	2 cut(s)	146, 348
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	216
CviAII	CATG	2 cut(s)	23, 409
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	3 cut(s)	43, 231, 245
DpnII	GATC	3 cut(s)	41, 229, 243
EaeI	YGGCCR	2 cut(s)	144, 346
Eam1104I	CTCTTC	2 cut(s)	100, 276
EarI	CTCTTC	2 cut(s)	100, 276
Eco130I	CCWWGG	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	26, 412
FaiI	YATR	7 cut(s)	6, 13, 24, 149, 390, 410, 420
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	2 cut(s)	22, 408
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	170, 212
Fsp4HI	GCNGC	2 cut(s)	170, 212
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	170, 212
HaeIII	GGCC	2 cut(s)	146, 348
HapII	CCGG	2 cut(s)	217, 250
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	26, 412
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	2 cut(s)	217, 250
HphI	GGTGA	2 cut(s)	167, 394
Hpy166II	GTNNAC	2 cut(s)	193, 385
Hpy188I	TCNGA	1 cut(s)	41
Hpy8I	GTNNAC	2 cut(s)	193, 385
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	4 cut(s)	26, 90, 169, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 403
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	26, 412
HspAI	GCGC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	41, 229, 243
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	6 cut(s)	149, 164, 191, 230, 263, 365
Lsp1109I	GCAGC	2 cut(s)	181, 198
LweI	GCATC	1 cut(s)	99
MalI	GATC	3 cut(s)	43, 231, 245
MboI	GATC	3 cut(s)	41, 229, 243
MboII	GAAGA	3 cut(s)	87, 263, 424
MlsI	TGGCCA	2 cut(s)	146, 348
MluCI	AATT	6 cut(s)	46, 56, 79, 100, 368, 400
MluNI	TGGCCA	2 cut(s)	146, 348
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	3 cut(s)	183, 247, 276
Mox20I	TGGCCA	2 cut(s)	146, 348
MroXI	GAANNNNTTC	1 cut(s)	270
MscI	TGGCCA	2 cut(s)	146, 348
MseI	TTAA	1 cut(s)	105
Msp20I	TGGCCA	2 cut(s)	146, 348
MspI	CCGG	2 cut(s)	217, 250
MspR9I	CCNGG	2 cut(s)	179, 251
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	127, 403
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	3 cut(s)	41, 229, 243
NlaIII	CATG	2 cut(s)	26, 412
NspV	TTCGAA	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	171, 213
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	170, 212
Sau3AI	GATC	3 cut(s)	41, 229, 243
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	179, 251
SetI	ASST	6 cut(s)	66, 168, 261, 271, 281, 381
SfaNI	GCATC	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	6 cut(s)	46, 56, 79, 100, 368, 400
StyD4I	CCNGG	2 cut(s)	177, 249
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	222, 372
TasI	AATT	6 cut(s)	46, 56, 79, 100, 368, 400
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	2 cut(s)	169, 211
TspDTI	ATGAA	2 cut(s)	335, 425
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	3 cut(s)	100, 368, 400
XmnI	GAANNNNTTC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.