Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003455

Physical Location & Seq

Genomic Coordinates Forward (+)

37263429 .. 37263716

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G437300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGATTAAAAGTCGATGCATCACCAGCGATGGCAAGCGTGTTATGACAACCGAGGAGTTGAAACAGTGGCTGAAGAAATTTGATACGGACAAAGATGGCCGTATCAGCAAAGAAGAACTCCGCCAGGCTATCCGCGCCACTGGAGGACGCTTCGCCATGTTCAAGAGCAGGCTTGGGTTACGGTCTGCAGACGCGGATCGCAATGGCTTCATTGATGAGGATGAACTCAACAACCCTGTAGATTTTGCACAGAAGCATTTGGGTGTCAAGATCACACACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

96

Amino Acids

10.89

Weight (kDa)

9.46

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003455)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15920 FvH4_2g34550
prunus_persica	Prupe.1G437300_v2.0.a1 Prupe.7G134600_v2.0.a1
pyrus_communis	pycom02g13750 pycom08g08390 pycom15g24590
rosa_chinensis	RchiOBHm_Chr2g0105311 RchiOBHm_Chr5g0048521 RchiOBHm_Chr5g0048531 RchiOBHm_Chr6g0307621 RchiOBHm_Chr6g0307791
rosa_laevigata	RLG00000017415
rosa_multiflora	Rmu_sc0000031.1_g000032 Rmu_sc0001407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00033280 Rroxscaffold_2G00138310
rosa_rugosa	Rorug02G0127500 Rorug06G0361000
rosa_samantha	Rh2AG178100 Rh2BG186500 Rh2CG182700 Rh2DG184100 Rh5AG319000 Rh5BG329200 Rh5BG329400 Rh5CG355100 Rh5DG340400 Rh5DG340600 Rh6AG470000 Rh6BG480500 Rh6CG486200 Rh6DG472600
rosa_wichuraiana	Rw5G029830 Rw5G029970 Rw6G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	138, 197
AciI	CCGC	3 cut(s)	124, 136, 197
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	64, 166
AjnI	CCWGG	1 cut(s)	126
AlwI	GGATC	1 cut(s)	207
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	16
BccI	CCATC	2 cut(s)	26, 92
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	128
BfmI	CTRYAG	2 cut(s)	189, 240
Bme1390I	CCNGG	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	8, 30
BpmI	CTGGAG	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	71
Bsh1236I	CGCG	2 cut(s)	138, 197
BshFI	GGCC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	199, 273
BspACI	CCGC	3 cut(s)	124, 136, 197
BspANI	GGCC	1 cut(s)	102
BspFNI	CGCG	2 cut(s)	138, 197
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	199, 273
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	69, 186
BstC8I	GCNNGC	2 cut(s)	38, 173
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	2 cut(s)	138, 197
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	202, 276
BstMBI	GATC	2 cut(s)	199, 273
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 108, 137
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	2 cut(s)	189, 240
BstUI	CGCG	2 cut(s)	138, 197
BsuRI	GGCC	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	74, 141
Cac8I	GCNNGC	2 cut(s)	38, 173
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	140
CseI	GACGC	2 cut(s)	159, 203
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	5 cut(s)	73, 102, 131, 175, 210
CviKI_1	RGCY	5 cut(s)	73, 102, 131, 175, 210
DpnI	GATC	2 cut(s)	201, 275
DpnII	GATC	2 cut(s)	199, 273
EaeI	YGGCCR	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	23
FaeI	CATG	1 cut(s)	163
FaiI	YATR	2 cut(s)	47, 161
FatI	CATG	1 cut(s)	159
FokI	GGATG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	2 cut(s)	159, 203
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	2 cut(s)	166, 271
HpyCH4III	ACNGT	2 cut(s)	69, 186
HpyCH4V	TGCA	3 cut(s)	21, 191, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 108, 137
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	199, 273
LpnPI	CCDG	6 cut(s)	40, 113, 129, 140, 157, 252
LweI	GCATC	2 cut(s)	8, 30
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	2 cut(s)	201, 275
MboI	GATC	2 cut(s)	199, 273
MboII	GAAGA	2 cut(s)	88, 128
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	3 cut(s)	49, 140, 214
Mph1103I	ATGCAT	1 cut(s)	23
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	138, 197
MwoI	GCNNNNNNNGC	3 cut(s)	27, 108, 137
NdeII	GATC	2 cut(s)	199, 273
NlaIII	CATG	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	199, 273
ScrFI	CCNGG	1 cut(s)	128
SfaNI	GCATC	2 cut(s)	8, 30
SfcI	CTRYAG	2 cut(s)	189, 240
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	3 cut(s)	124, 136, 197
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	69, 186
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	74, 148
TspDTI	ATGAA	2 cut(s)	202, 240
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	2 cut(s)	74, 148
XapI	RAATTY	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.