Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003455

Physical Location & Seq

Genomic Coordinates Forward (+)

6725284 .. 6725571

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGATTAAAAGTCGCTGCGTCACGAGCGATGGCAAATGTGTTATGACGACGGAGGAGTTGAAGAAATGGTTGAAGAAATTTGATGTCGACAAAGACGGTCGAATAAGCAAAAAAGAGCTCCGGGAGGCTATCCGCGCCACCGGGGGCCGGTTTGCCAGGTTCAAGAGCAGGCTTGGGGTGCGGTCTGCAGACGCCAATAGCAATGGCTTCGTTGATGAGGACGAGCTCGACAACCTTGTAGAGTTTGCACAGAAGCATTTGGGTGTCAAGATCGTAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

9.43

Isoelectric Point (pI)

14.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	11 - 45	7.9e-07	EF-hand domain pair
EF-hand_1	PF00036	20 - 47	2e-07	EF hand domain
EF-hand_6	PF13405	20 - 49	4.6e-07	EF-hand domain
EF-hand_5	PF13202	21 - 43	1.7e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003455)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15920 FvH4_2g34550
prunus_persica	Prupe.1G437300_v2.0.a1 Prupe.7G134600_v2.0.a1
pyrus_communis	pycom02g13750 pycom08g08390 pycom15g24590
rosa_chinensis	RchiOBHm_Chr2g0105311 RchiOBHm_Chr5g0048521 RchiOBHm_Chr5g0048531 RchiOBHm_Chr6g0307621 RchiOBHm_Chr6g0307791
rosa_laevigata	RLG00000017415
rosa_multiflora	Rmu_sc0000031.1_g000032 Rmu_sc0001407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00033280 Rroxscaffold_2G00138310
rosa_rugosa	Rorug02G0127500 Rorug06G0361000
rosa_samantha	Rh2AG178100 Rh2BG186500 Rh2CG182700 Rh2DG184100 Rh5AG319000 Rh5BG329200 Rh5BG329400 Rh5CG355100 Rh5DG340400 Rh5DG340600 Rh6AG470000 Rh6BG480500 Rh6CG486200 Rh6DG472600
rosa_wichuraiana	Rw5G029830 Rw5G029970 Rw6G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	138
AciI	CCGC	2 cut(s)	136, 184
AcsI	RAATTY	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	64, 76, 166
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	121, 229
AluI	AGCT	2 cut(s)	121, 229
Alw21I	GWGCWC	2 cut(s)	123, 231
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	2 cut(s)	125, 145
BanII	GRGCYC	2 cut(s)	123, 231
BauI	CACGAG	1 cut(s)	25
Bbv12I	GWGCWC	2 cut(s)	123, 231
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	1 cut(s)	160
BcnI	CCSGG	2 cut(s)	125, 145
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	3 cut(s)	125, 145, 160
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	3 cut(s)	125, 145, 160
BpuMI	CCSGG	2 cut(s)	125, 145
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	2 cut(s)	123, 231
BsiSI	CCGG	3 cut(s)	124, 144, 151
BslI	CCNNNNNNNGG	1 cut(s)	150
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	123, 231
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	2 cut(s)	136, 184
BspANI	GGCC	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	173
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 137, 181
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	3 cut(s)	123, 143, 158
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	2 cut(s)	10, 203
CviJI	RGCY	6 cut(s)	121, 131, 150, 175, 210, 229
CviKI_1	RGCY	6 cut(s)	121, 131, 150, 175, 210, 229
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Ecl136II	GAGCTC	2 cut(s)	121, 229
Eco24I	GRGCYC	2 cut(s)	123, 231
Eco53kI	GAGCTC	2 cut(s)	121, 229
EcoICRI	GAGCTC	2 cut(s)	121, 229
EcoRII	CCWGG	1 cut(s)	158
EcoT38I	GRGCYC	2 cut(s)	123, 231
FaiI	YATR	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	19
FriOI	GRGCYC	2 cut(s)	123, 231
Fsp4HI	GCNGC	1 cut(s)	19
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	3 cut(s)	124, 144, 151
HgaI	GACGC	2 cut(s)	10, 203
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HpaII	CCGG	3 cut(s)	124, 144, 151
Hpy166II	GTNNAC	2 cut(s)	91, 280
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	3 cut(s)	25, 166, 271
Hpy8I	GTNNAC	2 cut(s)	91, 280
Hpy99I	CGWCG	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	2 cut(s)	191, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 137, 181
Hsp92I	GRCGYC	1 cut(s)	195
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	6 cut(s)	137, 145, 157, 157, 164, 172
Lsp1109I	GCAGC	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	2 cut(s)	76, 88
MhlI	GDGCHC	2 cut(s)	123, 231
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	3 cut(s)	49, 121, 214
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	3 cut(s)	124, 144, 151
MspR9I	CCNGG	3 cut(s)	125, 145, 160
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	3 cut(s)	27, 137, 181
NciI	CCSGG	2 cut(s)	125, 145
NdeII	GATC	1 cut(s)	273
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	20
Psp124BI	GAGCTC	2 cut(s)	123, 231
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	264
SacI	GAGCTC	2 cut(s)	123, 231
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	3 cut(s)	125, 145, 160
SduI	GDGCHC	2 cut(s)	123, 231
SetI	ASST	4 cut(s)	123, 164, 231, 240
SfcI	CTRYAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	2 cut(s)	136, 184
SstI	GAGCTC	2 cut(s)	123, 231
StyD4I	CCNGG	3 cut(s)	123, 143, 158
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	3 cut(s)	90, 103, 231
TasI	AATT	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	68
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.