Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003455

Physical Location & Seq

Genomic Coordinates Reverse (-)

46557450 .. 46557815

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGATCCAAGGGTTTTACAGCACCAACTTGCTAATACAAGTTTCCGACTACTACAAGCTAGATTATATACATCTCTCTATATCGATTAAGAGCAGGTCTATTGCTAGTGATGGCGAACGTGTTATGACCACCGAGGAGTTGAAGAAATGGCTGAAGAAATTTGATACTGACAAAGATGGCCGTATAAGCAAAGAGGAACTCCGCCAGGCCATCCTCTCCACCAGCGAACGCTTTGCCACGTTCAAGAGCAGGCGTGCGTTACAATCTGCGGATGTCAATCAAGACGGATACATAGGTGAAGAAGAACTTGACAACCTTGTAAAGTTTGCACAGAAGCATTTGGGTGTCAAAATCATACACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

121

Amino Acids

14.04

Weight (kDa)

7.93

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	37 - 71	1.9e-07	EF-hand domain pair
EF-hand_1	PF00036	46 - 71	2.4e-07	EF hand domain
EF-hand_6	PF13405	46 - 71	6.5e-07	EF-hand domain
EF-hand_5	PF13202	47 - 69	1.2e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003455)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15920 FvH4_2g34550
prunus_persica	Prupe.1G437300_v2.0.a1 Prupe.7G134600_v2.0.a1
pyrus_communis	pycom02g13750 pycom08g08390 pycom15g24590
rosa_chinensis	RchiOBHm_Chr2g0105311 RchiOBHm_Chr5g0048521 RchiOBHm_Chr5g0048531 RchiOBHm_Chr6g0307621 RchiOBHm_Chr6g0307791
rosa_laevigata	RLG00000017415
rosa_multiflora	Rmu_sc0000031.1_g000032 Rmu_sc0001407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00033280 Rroxscaffold_2G00138310
rosa_rugosa	Rorug02G0127500 Rorug06G0361000
rosa_samantha	Rh2AG178100 Rh2BG186500 Rh2CG182700 Rh2DG184100 Rh5AG319000 Rh5BG329200 Rh5BG329400 Rh5CG355100 Rh5DG340400 Rh5DG340600 Rh6AG470000 Rh6BG480500 Rh6CG486200 Rh6DG472600
rosa_wichuraiana	Rw5G029830 Rw5G029970 Rw6G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AciI	CCGC	2 cut(s)	202, 269
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	142, 244
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AoxI	GGCC	2 cut(s)	178, 207
ApoI	RAATTY	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	280, 313
BccI	CCATC	3 cut(s)	104, 170, 218
BceAI	ACGGC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	1 cut(s)	206
BciVI	GTATCC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	59, 105
BfuAI	ACCTGC	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	7, 132
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	7, 132
BseGI	GGATG	2 cut(s)	210, 277
BseJI	GATNNNNATC	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	180, 209
BshVI	ATCGAT	1 cut(s)	83
BsnI	GGCC	2 cut(s)	180, 209
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	202, 269
BspANI	GGCC	2 cut(s)	180, 209
BspDI	ATCGAT	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	7, 132
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	251, 255
BstF5I	GGATG	2 cut(s)	210, 277
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	180, 209
BsuTUI	ATCGAT	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	210, 277
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	251, 255
ClaI	ATCGAT	1 cut(s)	83
CviJI	RGCY	4 cut(s)	58, 151, 180, 209
CviKI_1	RGCY	4 cut(s)	58, 151, 180, 209
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaiI	YATR	7 cut(s)	66, 68, 80, 125, 185, 293, 356
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FokI	GGATG	2 cut(s)	197, 284
FspBI	CTAG	2 cut(s)	59, 105
HaeIII	GGCC	2 cut(s)	180, 209
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	244, 281
HpyCH4IV	ACGT	2 cut(s)	118, 239
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpySE526I	ACGT	2 cut(s)	118, 239
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	5 cut(s)	79, 191, 218, 235, 235
MaeI	CTAG	2 cut(s)	59, 105
MaeII	ACGT	2 cut(s)	118, 239
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	154, 166, 311, 314
MluCI	AATT	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	3 cut(s)	127, 187, 224
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	1 cut(s)	3
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	3
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	6 cut(s)	60, 98, 121, 242, 298, 318
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	202, 269
SspMI	CTAG	2 cut(s)	59, 105
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	7
TaiI	ACGT	2 cut(s)	121, 242
TaqI	TCGA	1 cut(s)	83
TasI	AATT	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	300
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	2 cut(s)	59, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.