Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003455

Physical Location & Seq

Genomic Coordinates Reverse (-)

63882146 .. 63882433

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG472600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGATTAAGAGCAAGTCTGTCGCTAGTGATGGCAAACGTGTTATGACCACCGAGGAGTTGAAGAAATGGCTGAAGAAATTTGATACTGACAAAGATGGCCGTATAAGCAAACAGGAACTCCGCCAGGCTATCCACTCCACCGGTGGACGCTTTGCCACGTTCAAGAGCAGGCGTGGGTTACGATCTGCAGATGTCAATCAAGACGGATACATAGGTGAAGAAGAACTCGACAACCTTGTAGAGTTTGCACAGAAGTATTTGGGTGTCAGGATCATACACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

95

Amino Acids

10.88

Weight (kDa)

9.64

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	11 - 44	4.3e-07	EF-hand domain pair
EF-hand_1	PF00036	20 - 47	1.3e-07	EF hand domain
EF-hand_6	PF13405	20 - 49	1.4e-07	EF-hand domain
EF-hand_5	PF13202	21 - 43	3.4e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003455)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15920 FvH4_2g34550
prunus_persica	Prupe.1G437300_v2.0.a1 Prupe.7G134600_v2.0.a1
pyrus_communis	pycom02g13750 pycom08g08390 pycom15g24590
rosa_chinensis	RchiOBHm_Chr2g0105311 RchiOBHm_Chr5g0048521 RchiOBHm_Chr5g0048531 RchiOBHm_Chr6g0307621 RchiOBHm_Chr6g0307791
rosa_laevigata	RLG00000017415
rosa_multiflora	Rmu_sc0000031.1_g000032 Rmu_sc0001407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00033280 Rroxscaffold_2G00138310
rosa_rugosa	Rorug02G0127500 Rorug06G0361000
rosa_samantha	Rh2AG178100 Rh2BG186500 Rh2CG182700 Rh2DG184100 Rh5AG319000 Rh5BG329200 Rh5BG329400 Rh5CG355100 Rh5DG340400 Rh5DG340600 Rh6AG470000 Rh6BG480500 Rh6CG486200 Rh6DG472600
rosa_wichuraiana	Rw5G029830 Rw5G029970 Rw6G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	40
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	64, 166
AjnI	CCWGG	1 cut(s)	126
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	80
AsiGI	ACCGGT	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	230
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BccI	CCATC	2 cut(s)	26, 92
BceAI	ACGGC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bse118I	RCCGGY	1 cut(s)	143
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	54
BseJI	GATNNNNATC	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	102
BshTI	ACCGGT	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	144
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	185, 273
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	185, 273
Bst2UI	CCWGG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	188, 276
BstMBI	GATC	2 cut(s)	185, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	143
CseI	GACGC	1 cut(s)	159
CspAI	ACCGGT	1 cut(s)	143
CviJI	RGCY	3 cut(s)	73, 102, 131
CviKI_1	RGCY	3 cut(s)	73, 102, 131
DpnI	GATC	2 cut(s)	187, 275
DpnII	GATC	2 cut(s)	185, 273
EaeI	YGGCCR	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	126
FaiI	YATR	4 cut(s)	47, 107, 215, 278
FspBI	CTAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	159
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188III	TCNNGA	3 cut(s)	166, 203, 271
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4IV	ACGT	2 cut(s)	40, 161
HpyCH4V	TGCA	2 cut(s)	191, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	40, 161
Kzo9I	GATC	2 cut(s)	185, 273
LpnPI	CCDG	6 cut(s)	101, 113, 140, 157, 157, 256
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	40, 161
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	2 cut(s)	187, 275
MboI	GATC	2 cut(s)	185, 273
MboII	GAAGA	4 cut(s)	76, 88, 233, 236
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	1 cut(s)	49
MseI	TTAA	1 cut(s)	9
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	2 cut(s)	185, 273
PinAI	ACCGGT	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	185, 273
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	4 cut(s)	43, 164, 220, 240
SfcI	CTRYAG	1 cut(s)	189
SgrAI	CRCCGGYG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	126
TaiI	ACGT	2 cut(s)	43, 164
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TspGWI	ACGGA	1 cut(s)	222
XapI	RAATTY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.