Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003455

Physical Location & Seq

Genomic Coordinates Forward (+)

46224565 .. 46225002

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG340600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAATCTAAGCCTAACAAGAATATATATTATGAAAAAAGGGAGGGAGAGAGAGCGCTCCTTCACCAACCCATGATCCAAGGGTTTTACAGCACCAACTTGCTAATACAAGTTTCCGACTACTACAAGCTAGATTATATACATCTCTCTATGGCGATTAAGAGCAGGTCTATTGCTAGTGATGGCGAACGTGTTATGACCACTGAGGAGTTGAAGAAGTGGCTGAAGAAATTTGATACTGACAAAGATGGCCGTATAAGCAAAGAGGAACTCCACCAGGTTATCCGCGCCACCGGCGAACGCTTTGCCACATTCAAGAGCAGGCGTGCGTTACAATCTGCAGATGTCAATCAAGATGGATACATAGGTGAAGAAGAACTCGACAACCTTGTAGAGTTTGCACAGAAGCATTTGGGTGTCAAAATCATACAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

145

Amino Acids

16.95

Weight (kDa)

6.92

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	61 - 95	1.9e-07	EF-hand domain pair
EF-hand_1	PF00036	70 - 97	5.4e-07	EF hand domain
EF-hand_6	PF13405	70 - 99	6.2e-07	EF-hand domain
EF-hand_5	PF13202	71 - 94	3.6e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003455)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15920 FvH4_2g34550
prunus_persica	Prupe.1G437300_v2.0.a1 Prupe.7G134600_v2.0.a1
pyrus_communis	pycom02g13750 pycom08g08390 pycom15g24590
rosa_chinensis	RchiOBHm_Chr2g0105311 RchiOBHm_Chr5g0048521 RchiOBHm_Chr5g0048531 RchiOBHm_Chr6g0307621 RchiOBHm_Chr6g0307791
rosa_laevigata	RLG00000017415
rosa_multiflora	Rmu_sc0000031.1_g000032 Rmu_sc0001407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00033280 Rroxscaffold_2G00138310
rosa_rugosa	Rorug02G0127500 Rorug06G0361000
rosa_samantha	Rh2AG178100 Rh2BG186500 Rh2CG182700 Rh2DG184100 Rh5AG319000 Rh5BG329200 Rh5BG329400 Rh5CG355100 Rh5DG340400 Rh5DG340600 Rh6AG470000 Rh6BG480500 Rh6CG486200 Rh6DG472600
rosa_wichuraiana	Rw5G029830 Rw5G029970 Rw6G041040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	245
AfeI	AGCGCT	1 cut(s)	57
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	214, 316
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
AlwI	GGATC	1 cut(s)	70
Aor51HI	AGCGCT	1 cut(s)	57
AoxI	GGCC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	58, 290
AsuHPI	GGTGA	2 cut(s)	56, 380
BaeI	ACNNNNGTAYC	2 cut(s)	352, 385
BccI	CCATC	3 cut(s)	176, 242, 350
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	353
BfaI	CTAG	2 cut(s)	131, 177
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	293
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	294
BsnI	GGCC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	323, 327
BstDEI	CTNAG	2 cut(s)	9, 204
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	58, 290
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 294
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	323, 327
CfoI	GCGC	2 cut(s)	58, 290
Cfr10I	RCCGGY	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	276
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	4 cut(s)	13, 130, 223, 252
CviKI_1	RGCY	4 cut(s)	13, 130, 223, 252
DdeI	CTNAG	2 cut(s)	9, 204
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	79
Eco47III	AGCGCT	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	76
FatI	CATG	1 cut(s)	72
FspBI	CTAG	2 cut(s)	131, 177
GlaI	GCGC	2 cut(s)	57, 289
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	2 cut(s)	58, 290
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	2 cut(s)	56, 288
HinP1I	GCGC	2 cut(s)	56, 288
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	56, 380
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	2 cut(s)	316, 353
HpyAV	CCTTC	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	341, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 294
HpyF3I	CTNAG	2 cut(s)	9, 204
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	2 cut(s)	56, 288
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	5 cut(s)	151, 263, 290, 307, 307
MabI	ACCWGGT	1 cut(s)	276
MaeI	CTAG	2 cut(s)	131, 177
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	226, 238, 383, 386
MluCI	AATT	2 cut(s)	230, 431
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	37, 199, 259
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	414
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	258, 294
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	6 cut(s)	132, 170, 193, 282, 370, 390
SexAI	ACCWGGT	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	339
SgrAI	CRCCGGYG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	2 cut(s)	230, 431
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	2 cut(s)	131, 177
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	79
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	230, 431
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	230
XspI	CTAG	2 cut(s)	131, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.