FvH4_2g35571

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002862
Physical Location & Seq
Forward (+)
26214754 .. 26215679
926 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35571.t1

Sequence Viewer

Length: 645 bp
ATGGGTAAATATGGATCTCTTGCCAAAATATATCTGGAGAAACCAAATTCTGCAAAGTTTGTGGTGGGTCATGGCGGCCCAAGACGGGCTAAGACAAGTCAAGGCGGCTCTTTGGTGGCCCTAGACTGGTTAAGGCGGCCCAAAGCGGGTCAAGGCCGCCATTTGGTGGCCTTAGACGGGTCAAGGCGGCCCCTTGGAGGCCCTAGGCGGGTTTTAGGAGGGTCATGGCGGCCCCTTGGTGAACGCGGCCCAATTCTGTCCAAGGCGGGTCAAGGCGTGTCATGGCGGCCCAAGGCGAGTCAAGACATATCAAGGCGGGTCATGGCGGCCCAAGGGGGGTCAAGGCGGGTCATGGCGTGCCAAAGAAGTTCATGGTGGCCCAAGGCGGGTCATGGAGTCCCAAAGAGGGTCAAAGCGGACCAAGGCGGGTCATGGCGGTCCAAAGCGGGTCAATACGGGTTTAGGCGGCCCAAGGCGTGTCAAGGCAGGCCAAGGCAATTCATGGCGGGTCATGGCGGCCCAAGGCGGGTCAAGATAGGTCATGGCGGCCGAAGGCAGATCAAGGCGGGTCTTGGCATGCCAAAGAGGGTCAAGGCGGGTCCTGGCGTCCCAAAGAGGGTCAGCGCGGCCCAAGGCGAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

22.99

Weight (kDa)

12.0

Isoelectric Point (pI)

64.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 166
AccII CGCG 2 cut(s) 246, 626
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 606
AjnI CCWGG 1 cut(s) 601
AlwI GGATC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 46
AspA2I CCTAGG 1 cut(s) 203
AspLEI GCGC 1 cut(s) 626
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 3 cut(s) 418, 438, 599
AvrII CCTAGG 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 603
BfaI CTAG 2 cut(s) 122, 204
BlnI CCTAGG 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 603
Bme18I GGWCC 3 cut(s) 418, 438, 599
BmiI GGNNCC 3 cut(s) 191, 233, 600
BmrFI CCNGG 1 cut(s) 603
BpmI CTGGAG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 606
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 603
BseNI ACTGG 1 cut(s) 131
BseX3I CGGCCG 1 cut(s) 547
Bsh1236I CGCG 2 cut(s) 246, 626
Bsh1285I CGRYCG 1 cut(s) 550
BsiEI CGRYCG 1 cut(s) 550
BslFI GGGAC 2 cut(s) 383, 593
BsmFI GGGAC 2 cut(s) 383, 593
Bsp143I GATC 2 cut(s) 14, 558
BspFNI CGCG 2 cut(s) 246, 626
BspLI GGNNCC 3 cut(s) 191, 233, 600
BspPI GGATC 1 cut(s) 22
BsrI ACTGG 1 cut(s) 131
BssMI GATC 2 cut(s) 14, 558
BssNI GRCGYC 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 603
BstACI GRCGYC 1 cut(s) 606
BstC8I GCNNGC 3 cut(s) 358, 488, 578
BstDEI CTNAG 2 cut(s) 90, 172
BstFNI CGCG 2 cut(s) 246, 626
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 2 cut(s) 17, 561
BstMBI GATC 2 cut(s) 14, 558
BstMCI CGRYCG 1 cut(s) 550
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 601
BstUI CGCG 2 cut(s) 246, 626
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BstZI CGGCCG 1 cut(s) 547
Cac8I GCNNGC 3 cut(s) 358, 488, 578
CfoI GCGC 1 cut(s) 626
CseI GACGC 1 cut(s) 595
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
DdeI CTNAG 2 cut(s) 90, 172
DpnI GATC 2 cut(s) 16, 560
DpnII GATC 2 cut(s) 14, 558
EaeI YGGCCR 1 cut(s) 547
EagI CGGCCG 1 cut(s) 547
EclXI CGGCCG 1 cut(s) 547
Eco47I GGWCC 3 cut(s) 418, 438, 599
Eco52I CGGCCG 1 cut(s) 547
EcoO109I RGGNCCY 2 cut(s) 200, 599
EcoRII CCWGG 1 cut(s) 601
FaqI GGGAC 2 cut(s) 383, 593
FspBI CTAG 2 cut(s) 122, 204
GlaI GCGC 1 cut(s) 625
GsuI CTGGAG 1 cut(s) 56
HgaI GACGC 1 cut(s) 595
HhaI GCGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 606
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HinfI GANTC 3 cut(s) 298, 396, 638
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 242
Hpy188III TCNNGA 3 cut(s) 35, 302, 532
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 546
HpyCH4V TGCA 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 90, 172
Hsp92I GRCGYC 1 cut(s) 606
HspAI GCGC 1 cut(s) 624
Kzo9I GATC 2 cut(s) 14, 558
LpnPI CCDG 5 cut(s) 20, 112, 472, 588, 615
MaeI CTAG 2 cut(s) 122, 204
MalI GATC 2 cut(s) 16, 560
MboI GATC 2 cut(s) 14, 558
MflI RGATCY 1 cut(s) 14
MluCI AATT 3 cut(s) 46, 252, 497
MlyI GAGTC 2 cut(s) 307, 405
MnlI CCTC 5 cut(s) 191, 212, 399, 579, 609
MseI TTAA 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 603
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 2 cut(s) 246, 626
NdeII GATC 2 cut(s) 14, 558
NlaIV GGNNCC 3 cut(s) 191, 233, 600
NspI RCATGY 1 cut(s) 580
PaeI GCATGC 1 cut(s) 580
PflMI CCANNNNNTGG 1 cut(s) 166
PleI GAGTC 2 cut(s) 306, 404
PpsI GAGTC 2 cut(s) 306, 404
PpuMI RGGWCCY 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 191, 233, 600
PspPPI RGGWCCY 1 cut(s) 599
PsuI RGATCY 1 cut(s) 14
SaqAI TTAA 1 cut(s) 131
Sau3AI GATC 2 cut(s) 14, 558
SchI GAGTC 2 cut(s) 307, 405
ScrFI CCNGG 1 cut(s) 603
SetI ASST 1 cut(s) 541
SinI GGWCC 3 cut(s) 418, 438, 599
SphI GCATGC 1 cut(s) 580
Sse9I AATT 3 cut(s) 46, 252, 497
SspMI CTAG 2 cut(s) 122, 204
StyD4I CCNGG 1 cut(s) 601
TasI AATT 3 cut(s) 46, 252, 497
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 360, 490
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 3 cut(s) 418, 438, 599
XapI RAATTY 1 cut(s) 46
XceI RCATGY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmaJI CCTAGG 1 cut(s) 203
XspI CTAG 2 cut(s) 122, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.