Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002862

Physical Location & Seq

Genomic Coordinates Forward (+)

7194747 .. 7195196

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGAGCTCTGCTTTTCTCTTACGCCTCCTTATCTTTGATTGCATTTCTGGATGGGATCTTAGAGAAAGACGAGATCGATTTTTCTGAGATTGTATTTTGGATTCAAATCCACCATGTGCCTTTGGGGATGATTTTTGTTGGTACAACTCGAAGGACCGGCCGGAACGTTGGCGAATTCATGGAGGTGGAAGATCCGGTCATGATATTTGACTATGAGATCTCAGATCTGGGTTTTCTCTTACGTATCTCAAATTTCAGATCTGTCCCCAAATCTCAAATCACTTCTGTGGTACTATCGGTTTCTCTCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005871 GO:0005875 GO:0006091 GO:0006928 GO:0007017 GO:0007018 GO:0007275 GO:0008150 GO:0008152 GO:0009060 GO:0009791 GO:0009845 GO:0009987 GO:0015630 GO:0015980 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0048856 GO:0055114 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin

Protein Analysis

105

Amino Acids

11.8

Weight (kDa)

4.8

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002862)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35571 FvH4_2g35680 FvH4_2g35681 FvH4_2g35682 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520
malus_domestica	MD15G1094300.v1.1
prunus_persica	Prupe.1G449200_v2.0.a1 Prupe.1G449300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306121
rosa_laevigata	RLG00000010823 RLG00000016512
rosa_multiflora	Rmu_sc0000785.1_g000018 Rmu_sc0000785.1_g000021 Rmu_sc0003594.1_g000022
rosa_roxburghii	Rroxscaffold_7G00162040 Rroxscaffold_7G00177250
rosa_rugosa	Rorug06G0282200 Rorug06G0346800 Rorug06G0346800
rosa_samantha	Rh6AG459300 Rh6AG459400 Rh6BG441600 Rh6CG473800 Rh6DG460000
rosa_wichuraiana	Rw6G040040 Rw7G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	168
AclWI	GGATC	2 cut(s)	65, 188
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	176, 253
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	145, 294
AgsI	TTSAA	1 cut(s)	107
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	65, 188
AoxI	GGCC	1 cut(s)	160
ApoI	RAATTY	2 cut(s)	176, 253
AspS9I	GGNCC	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BccI	CCATC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	313
BglII	AGATCT	3 cut(s)	219, 226, 260
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	107
BseCI	ATCGAT	1 cut(s)	78
BseGI	GGATG	2 cut(s)	58, 135
BseJI	GATNNNNATC	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	78, 237
BseX3I	CGGCCG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	3 cut(s)	159, 163, 197
BslFI	GGGAC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	6 cut(s)	57, 75, 193, 219, 226, 260
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	79, 236
BspDI	ATCGAT	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	2 cut(s)	65, 188
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssMI	GATC	6 cut(s)	57, 75, 193, 219, 226, 260
BstBAI	YACGTR	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	61, 87, 223
BstF5I	GGATG	2 cut(s)	58, 135
BstKTI	GATC	6 cut(s)	60, 78, 196, 222, 229, 263
BstMBI	GATC	6 cut(s)	57, 75, 193, 219, 226, 260
BstMCI	CGRYCG	1 cut(s)	163
BstSNI	TACGTA	1 cut(s)	245
BstX2I	RGATCY	5 cut(s)	57, 193, 219, 226, 260
BstYI	RGATCY	5 cut(s)	57, 193, 219, 226, 260
BstZI	CGGCCG	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	58, 135
CciI	TCATGA	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	144, 293
CviAII	CATG	3 cut(s)	116, 181, 202
CviJI	RGCY	2 cut(s)	8, 162
CviKI_1	RGCY	2 cut(s)	8, 162
CviQI	GTAC	2 cut(s)	144, 293
DdeI	CTNAG	3 cut(s)	61, 87, 223
DpnI	GATC	6 cut(s)	59, 77, 195, 221, 228, 262
DpnII	GATC	6 cut(s)	57, 75, 193, 219, 226, 260
DraIII	CACNNNGTG	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	160
EagI	CGGCCG	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	8
EclXI	CGGCCG	1 cut(s)	160
Eco105I	TACGTA	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	156
Eco52I	CGGCCG	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	3 cut(s)	119, 184, 205
FaiI	YATR	4 cut(s)	117, 182, 203, 216
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	115, 180, 201
FokI	GGATG	2 cut(s)	65, 142
FriOI	GRGCYC	1 cut(s)	10
FspBI	CTAG	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	3 cut(s)	159, 163, 197
Hin1II	CATG	3 cut(s)	119, 184, 205
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	3 cut(s)	159, 163, 197
Hpy188I	TCNGA	3 cut(s)	88, 226, 260
Hpy188III	TCNNGA	2 cut(s)	50, 202
HpyAV	CCTTC	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	168, 244
HpyCH4V	TGCA	1 cut(s)	44
HpyF3I	CTNAG	3 cut(s)	61, 87, 223
HpySE526I	ACGT	2 cut(s)	168, 244
Hsp92II	CATG	3 cut(s)	119, 184, 205
Kzo9I	GATC	6 cut(s)	57, 75, 193, 219, 226, 260
LpnPI	CCDG	5 cut(s)	35, 172, 176, 210, 215
MaeI	CTAG	1 cut(s)	313
MaeII	ACGT	2 cut(s)	168, 244
MalI	GATC	6 cut(s)	59, 77, 195, 221, 228, 262
MboI	GATC	6 cut(s)	57, 75, 193, 219, 226, 260
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	5 cut(s)	57, 193, 219, 226, 260
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	2 cut(s)	176, 253
MnlI	CCTC	2 cut(s)	37, 178
MslI	CAYNNNNRTG	2 cut(s)	185, 287
MspI	CCGG	3 cut(s)	159, 163, 197
NdeII	GATC	6 cut(s)	57, 75, 193, 219, 226, 260
NlaIII	CATG	3 cut(s)	119, 184, 205
OliI	CACNNNNGTG	1 cut(s)	287
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	10
Psp1406I	AACGTT	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	156
PsuI	RGATCY	5 cut(s)	57, 193, 219, 226, 260
RsaI	GTAC	2 cut(s)	145, 294
RsaNI	GTAC	2 cut(s)	144, 293
RseI	CAYNNNNRTG	2 cut(s)	185, 287
SacI	GAGCTC	1 cut(s)	10
Sau3AI	GATC	6 cut(s)	57, 75, 193, 219, 226, 260
Sau96I	GGNCC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	4 cut(s)	10, 171, 189, 247
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	2 cut(s)	185, 287
SnaBI	TACGTA	1 cut(s)	245
Sse9I	AATT	2 cut(s)	176, 253
SspMI	CTAG	1 cut(s)	313
SstI	GAGCTC	1 cut(s)	10
TaiI	ACGT	2 cut(s)	171, 247
TaqI	TCGA	2 cut(s)	78, 151
TasI	AATT	2 cut(s)	176, 253
TfiI	GAWTC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	2 cut(s)	176, 253
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.