Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002862

Physical Location & Seq

Genomic Coordinates Forward (+)

42997940 .. 43001650

Gene Structure 3711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0282200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCATTTGGTAAGAAGTCGAAATCGAGGTCACCGAATTTCAGAAGAAGGGACGCTGTCCAAATGAATTGCGTACAAACAGTGAGAACGGAGCCCCAGTGTAAACAGAGAAGAGCTAAGGGAGTTGAGAAGGAAACCAGTGGGCATGAAATACGCCCGGATGTGGGTGGAGAAACAGATTATGGTGCATTACGATGTGACCCGTGTAAAATGAATACATATCATGGCTCAGAAGGGTTTGGGTCGATGAAGGTAAGGGTGGGTGATGTGAAATCAATAATTGGGAGGGTGACAGAAACAACTGGTTTAATGGAGCGCGAGTTGGAGAGAATGGGGGAAAAAGTGCTCCATATAGAACAGTATATGTCTGAAGTTGTGAATGAGGCAGCCATTGAAGAAATTGTTAATGAGGTTGTGGAGCTTAGGGAGGGCAATATAGAAGCACAAAAGGTGGAGGAGCATGTTAAACGCGTGGTTGATGATATGGAGGTGAAGCATGTGAAGAGTAAAGGCCGAAAACAGAAGCATAAGAGCAGGAAACAAAAATTTGGTGCATGTGCAAATAAAGCTGTAACTGACCTTGGTGTACTACAAGAACGAGCTAGATGCAATGATGAGCAATCTTGCTTTGCAAATTGGCTTGCAAGTACGTCTGGCATGTGCGGCTTAAAGAGGTTTCATCGTCGTCTTCATTTTTGCTCGAAGATATTCACCCCACGGCATGACAGTATGGATGATCATTGGTATTTATTGGTCATGAACCTGCATGAAAAGAAAGCATTATTGTGGGACATCTATCCCGATCAAACTCGGTCGATGACACTAATGCAGAAGGTGTTTTCATGCGAAATAACAATGTTCAGCGATGTTTATTACCACTTTCCATCCTTCTCAATTACCTTGGCCGAAGGGGACCGGACAAATCTCCAAACATTTGATAGAGGCATATTCGTCATTAGGCACATGAAGCACTATCTTGACCCATGGTCAATAGGGTTCGTCTCTGAGGACCAGCGGAACCGTGTTGCTTTAGAAATAGTACAGAGTCCCCGGAATGAACATCGTCGTGTTGTCCTAGCTGCTGCAGTTGGTGGAAGCACGAGTGTGGGTGCGAAAAATGCATTTAGTCCACCAACGGGACGAAAATGCCGTAGTCATCGAAAGCGGCGTGATCGGACTTTGAGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPE65

Protein Analysis

396

Amino Acids

45.54

Weight (kDa)

9.47

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002862)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35571 FvH4_2g35680 FvH4_2g35681 FvH4_2g35682 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520
malus_domestica	MD15G1094300.v1.1
prunus_persica	Prupe.1G449200_v2.0.a1 Prupe.1G449300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306121
rosa_laevigata	RLG00000010823 RLG00000016512
rosa_multiflora	Rmu_sc0000785.1_g000018 Rmu_sc0000785.1_g000021 Rmu_sc0003594.1_g000022
rosa_roxburghii	Rroxscaffold_7G00162040 Rroxscaffold_7G00177250
rosa_rugosa	Rorug06G0282200 Rorug06G0346800 Rorug06G0346800
rosa_samantha	Rh6AG459300 Rh6AG459400 Rh6BG441600 Rh6CG473800 Rh6DG460000
rosa_wichuraiana	Rw6G040040 Rw7G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1183
Acc36I	ACCTGC	1 cut(s)	771
AccII	CGCG	2 cut(s)	318, 471
AciI	CCGC	3 cut(s)	663, 1015, 1165
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	2 cut(s)	37, 545
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	4 cut(s)	75, 588, 649, 1041
AfiI	CCNNNNNNNGG	3 cut(s)	163, 164, 1136
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	1 cut(s)	395
AhdI	GACNNNNNGTC	1 cut(s)	985
AleI	CACNNNNGTG	1 cut(s)	1103
AluBI	AGCT	5 cut(s)	116, 421, 569, 602, 1079
AluI	AGCT	5 cut(s)	116, 421, 569, 602, 1079
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	1006
AoxI	GGCC	2 cut(s)	511, 903
ApeKI	GCWGC	3 cut(s)	386, 1079, 1082
ApoI	RAATTY	2 cut(s)	37, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	3 cut(s)	913, 1009, 1185
AsuC2I	CCSGG	2 cut(s)	158, 1051
AsuHPI	GGTGA	5 cut(s)	24, 275, 301, 502, 703
AvaII	GGWCC	3 cut(s)	913, 1009, 1185
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	1099
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	398, 1066, 1069
BccI	CCATC	1 cut(s)	892
BceAI	ACGGC	2 cut(s)	734, 1134
BcgI	CGANNNNNNTGC	2 cut(s)	588, 622
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	2 cut(s)	158, 1051
BcoDI	GTCTC	1 cut(s)	1006
BfaI	CTAG	2 cut(s)	603, 1076
BfmI	CTRYAG	1 cut(s)	1083
BfuAI	ACCTGC	1 cut(s)	771
BisI	GCNGC	5 cut(s)	387, 664, 1080, 1083, 1166
BlsI	GCNGC	5 cut(s)	388, 665, 1081, 1084, 1167
Bme1390I	CCNGG	2 cut(s)	158, 1051
Bme18I	GGWCC	3 cut(s)	913, 1009, 1185
BmeRI	GACNNNNNGTC	1 cut(s)	985
BmgT120I	GGNCC	3 cut(s)	913, 1009, 1185
BmiI	GGNNCC	3 cut(s)	93, 914, 1019
BmrFI	CCNGG	2 cut(s)	158, 1051
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	596
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	680
Bpu10I	CCTNAGC	2 cut(s)	117, 422
BpuMI	CCSGG	2 cut(s)	158, 1051
BsaJI	CCNNGG	5 cut(s)	580, 716, 900, 983, 1049
BsaWI	WCCGGW	1 cut(s)	915
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 305, 335
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 164, 1136
Bse1I	ACTGG	3 cut(s)	97, 138, 307
Bse3DI	GCAATG	1 cut(s)	616
BseDI	CCNNGG	5 cut(s)	580, 716, 900, 983, 1049
BseGI	GGATG	3 cut(s)	166, 739, 884
BseLI	CCNNNNNNNGG	3 cut(s)	163, 164, 1136
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	243, 996
BseNI	ACTGG	3 cut(s)	97, 138, 307
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	3 cut(s)	398, 1066, 1069
Bsh1236I	CGCG	2 cut(s)	318, 471
Bsh1285I	CGRYCG	1 cut(s)	815
BshFI	GGCC	2 cut(s)	513, 905
BsiEI	CGRYCG	1 cut(s)	815
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	3 cut(s)	158, 916, 1051
BslFI	GGGAC	5 cut(s)	65, 803, 926, 1032, 1152
BslI	CCNNNNNNNGG	3 cut(s)	163, 164, 1136
BsmAI	GTCTC	1 cut(s)	1006
BsmBI	CGTCTC	1 cut(s)	1006
BsmFI	GGGAC	5 cut(s)	65, 803, 926, 1032, 1152
BsnI	GGCC	2 cut(s)	513, 905
Bsp1286I	GDGCHC	2 cut(s)	96, 348
Bsp143I	GATC	3 cut(s)	736, 802, 1171
Bsp19I	CCATGG	1 cut(s)	983
BspACI	CCGC	3 cut(s)	663, 1015, 1165
BspANI	GGCC	2 cut(s)	513, 905
BspCNI	CTCAG	2 cut(s)	242, 997
BspFNI	CGCG	2 cut(s)	318, 471
BspHI	TCATGA	1 cut(s)	756
BspLI	GGNNCC	3 cut(s)	93, 914, 1019
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	1 cut(s)	771
BspQI	GCTCTTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	3 cut(s)	97, 138, 307
BssECI	CCNNGG	5 cut(s)	580, 716, 900, 983, 1049
BssMI	GATC	3 cut(s)	736, 802, 1171
BssSI	CACGAG	1 cut(s)	1099
BssT1I	CCWWGG	3 cut(s)	580, 900, 983
Bst2BI	CACGAG	1 cut(s)	1099
Bst4CI	ACNGT	4 cut(s)	82, 360, 728, 1022
Bst6I	CTCTTC	2 cut(s)	106, 497
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	4 cut(s)	117, 229, 422, 1005
BstDSI	CCRYGG	2 cut(s)	716, 983
BstEII	GGTNACC	1 cut(s)	30
BstF5I	GGATG	3 cut(s)	166, 739, 884
BstFNI	CGCG	2 cut(s)	318, 471
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	3 cut(s)	739, 805, 1174
BstMAI	GTCTC	1 cut(s)	1006
BstMBI	GATC	3 cut(s)	736, 802, 1171
BstMCI	CGRYCG	1 cut(s)	815
BstMWI	GCNNNNNNNGC	4 cut(s)	566, 663, 967, 1118
BstNSI	RCATGY	4 cut(s)	464, 500, 558, 661
BstPI	GGTNACC	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	156, 1049
BstSFI	CTRYAG	1 cut(s)	1083
BstUI	CGCG	2 cut(s)	318, 471
BstV1I	GCAGC	3 cut(s)	398, 1066, 1069
BstV2I	GAAGAC	1 cut(s)	680
BsuRI	GGCC	2 cut(s)	513, 905
BtgI	CCRYGG	2 cut(s)	716, 983
BtgZI	GCGATG	1 cut(s)	879
BtsCI	GGATG	3 cut(s)	166, 739, 884
BtsIMutI	CAGTG	3 cut(s)	87, 104, 145
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	1 cut(s)	642
CciI	TCATGA	1 cut(s)	756
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	3 cut(s)	913, 1009, 1185
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	4 cut(s)	74, 587, 648, 1040
CviQI	GTAC	4 cut(s)	74, 587, 648, 1040
DdeI	CTNAG	4 cut(s)	117, 229, 422, 1005
DpnI	GATC	3 cut(s)	738, 804, 1173
DpnII	GATC	3 cut(s)	736, 802, 1171
DrdI	GACNNNNNNGTC	1 cut(s)	1183
DriI	GACNNNNNGTC	1 cut(s)	985
DseDI	GACNNNNNNGTC	1 cut(s)	1183
EaeI	YGGCCR	1 cut(s)	903
Eam1104I	CTCTTC	2 cut(s)	106, 497
Eam1105I	GACNNNNNGTC	1 cut(s)	985
EarI	CTCTTC	2 cut(s)	106, 497
Eco130I	CCWWGG	3 cut(s)	580, 900, 983
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	3 cut(s)	913, 1009, 1185
Eco57I	CTGAAG	1 cut(s)	390
Eco91I	GGTNACC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	1185
EcoO65I	GGTNACC	1 cut(s)	30
EcoT14I	CCWWGG	3 cut(s)	580, 900, 983
EcoT22I	ATGCAT	1 cut(s)	1123
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	3 cut(s)	580, 900, 983
Esp3I	CGTCTC	1 cut(s)	1006
FaqI	GGGAC	5 cut(s)	65, 803, 926, 1032, 1152
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	5 cut(s)	387, 664, 1080, 1083, 1166
FokI	GGATG	3 cut(s)	173, 746, 871
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	5 cut(s)	387, 664, 1080, 1083, 1166
FspBI	CTAG	2 cut(s)	603, 1076
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	5 cut(s)	387, 664, 1080, 1083, 1166
HaeIII	GGCC	2 cut(s)	513, 905
HapII	CCGG	3 cut(s)	158, 916, 1051
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	1045
HpaII	CCGG	3 cut(s)	158, 916, 1051
HphI	GGTGA	5 cut(s)	24, 275, 301, 502, 703
Hpy166II	GTNNAC	3 cut(s)	104, 587, 1130
Hpy188I	TCNGA	5 cut(s)	44, 232, 370, 1006, 1176
Hpy188III	TCNNGA	3 cut(s)	757, 800, 977
Hpy8I	GTNNAC	3 cut(s)	104, 587, 1130
Hpy99I	CGWCG	2 cut(s)	687, 1068
HpyAV	CCTTC	7 cut(s)	42, 124, 227, 244, 826, 898, 902
HpyCH4III	ACNGT	4 cut(s)	82, 360, 728, 1022
HpyCH4IV	ACGT	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	566, 663, 967, 1118
HpyF3I	CTNAG	4 cut(s)	117, 229, 422, 1005
HpySE526I	ACGT	1 cut(s)	650
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	3 cut(s)	736, 802, 1171
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	5 cut(s)	91, 313, 351, 418, 457
Lsp1109I	GCAGC	3 cut(s)	398, 1066, 1069
LweI	GCATC	1 cut(s)	596
MaeI	CTAG	2 cut(s)	603, 1076
MaeII	ACGT	1 cut(s)	650
MaeIII	GTNAC	4 cut(s)	30, 197, 289, 571
MalI	GATC	3 cut(s)	738, 804, 1173
MboI	GATC	3 cut(s)	736, 802, 1171
MboII	GAAGA	6 cut(s)	57, 123, 407, 514, 680, 715
MhlI	GDGCHC	2 cut(s)	96, 348
MluCI	AATT	7 cut(s)	37, 67, 279, 399, 545, 634, 894
MluI	ACGCGT	1 cut(s)	469
MlyI	GAGTC	1 cut(s)	1054
MmeI	TCCRAC	1 cut(s)	303
Mph1103I	ATGCAT	1 cut(s)	1123
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	4 cut(s)	308, 405, 465, 668
MslI	CAYNNNNRTG	4 cut(s)	193, 784, 1065, 1103
MspA1I	CMGCKG	1 cut(s)	1015
MspI	CCGG	3 cut(s)	158, 916, 1051
MspR9I	CCNGG	2 cut(s)	158, 1051
MvnI	CGCG	2 cut(s)	318, 471
MwoI	GCNNNNNNNGC	4 cut(s)	566, 663, 967, 1118
NciI	CCSGG	2 cut(s)	158, 1051
NcoI	CCATGG	1 cut(s)	983
NdeII	GATC	3 cut(s)	736, 802, 1171
NlaIV	GGNNCC	3 cut(s)	93, 914, 1019
NmuCI	GTSAC	3 cut(s)	30, 197, 289
NsiI	ATGCAT	1 cut(s)	1123
NspI	RCATGY	4 cut(s)	464, 500, 558, 661
OliI	CACNNNNGTG	1 cut(s)	1103
PagI	TCATGA	1 cut(s)	756
PciSI	GCTCTTC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	3 cut(s)	32, 1147, 1165
PdmI	GAANNNNTTC	1 cut(s)	707
PflFI	GACNNNGTC	1 cut(s)	56
PkrI	GCNGC	5 cut(s)	388, 665, 1081, 1084, 1167
PleI	GAGTC	1 cut(s)	1053
PpsI	GAGTC	1 cut(s)	1053
PpuMI	RGGWCCY	1 cut(s)	1185
Psp5II	RGGWCCY	1 cut(s)	1185
PspEI	GGTNACC	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	93, 914, 1019
PspPI	GGNCC	3 cut(s)	913, 1009, 1185
PspPPI	RGGWCCY	1 cut(s)	1185
PstI	CTGCAG	1 cut(s)	1087
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	4 cut(s)	75, 588, 649, 1041
RsaNI	GTAC	4 cut(s)	74, 587, 648, 1040
RseI	CAYNNNNRTG	4 cut(s)	193, 784, 1065, 1103
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	4 cut(s)	308, 405, 465, 668
SatI	GCNGC	5 cut(s)	387, 664, 1080, 1083, 1166
Sau3AI	GATC	3 cut(s)	736, 802, 1171
Sau96I	GGNCC	3 cut(s)	913, 1009, 1185
SchI	GAGTC	1 cut(s)	1054
ScrFI	CCNGG	2 cut(s)	158, 1051
SduI	GDGCHC	2 cut(s)	96, 348
SfaNI	GCATC	1 cut(s)	596
SfcI	CTRYAG	1 cut(s)	1083
SinI	GGWCC	3 cut(s)	913, 1009, 1185
SmiMI	CAYNNNNRTG	4 cut(s)	193, 784, 1065, 1103
Sse9I	AATT	7 cut(s)	37, 67, 279, 399, 545, 634, 894
SsiI	CCGC	3 cut(s)	663, 1015, 1165
SspMI	CTAG	2 cut(s)	603, 1076
StyD4I	CCNGG	2 cut(s)	156, 1049
StyI	CCWWGG	3 cut(s)	580, 900, 983
TaaI	ACNGT	4 cut(s)	82, 360, 728, 1022
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	6 cut(s)	20, 26, 245, 701, 815, 1159
TaqII	GACCGA	1 cut(s)	801
TasI	AATT	7 cut(s)	37, 67, 279, 399, 545, 634, 894
TatI	WGTACW	2 cut(s)	586, 1039
TauI	GCSGC	2 cut(s)	666, 1168
Tru1I	TTAA	4 cut(s)	308, 405, 465, 668
Tru9I	TTAA	4 cut(s)	308, 405, 465, 668
TscAI	CASTG	3 cut(s)	87, 104, 145
TseFI	GTSAC	3 cut(s)	30, 197, 289
TseI	GCWGC	3 cut(s)	386, 1079, 1082
Tsp45I	GTSAC	3 cut(s)	30, 197, 289
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	3 cut(s)	87, 104, 145
Tth111I	GACNNNGTC	1 cut(s)	56
VpaK11BI	GGWCC	3 cut(s)	913, 1009, 1185
XapI	RAATTY	2 cut(s)	37, 545
XceI	RCATGY	4 cut(s)	464, 500, 558, 661
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	2 cut(s)	603, 1076
Zsp2I	ATGCAT	1 cut(s)	1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.