Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002862

Physical Location & Seq

Genomic Coordinates Forward (+)

26316959 .. 26318693

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35682.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGAACAGATGCAAGGAAACCTTACTATGTTTTGGGGGTCATCTCTGCTGACGGAAAGAAAGTGCTGCACAAGGTTGATCTCAAATTCAAAAGAAGTGTGTTCAGTCATGATATAGGAGTCACACCACAGTACAATGTAATCATTGATCATCCTCTCACAATGGATTTCAAGAGACTCATCATGGGAGGCGAATTTATGAAGTATGTAAAGGAAGAGTGCGCGAGAATCGGGGTCATGCCTCGTTATGGTGATGCAGAGTCTGTCAAATGGTTTGAGGTGCAGACCAATTGCACATTTCACATTCTCAATTGCTTTGAGGATGCTAATCAGGTTATAGTAAGGGGCTGTAGGGCTCTCACATCCATTGCGCCAGGTCCTGACAGTGGCACTTATGAATGGTTCTCCAAGGGGTTCAACTTTGCTGGTGATCATCATGATTCTGCAGAGGTTGGATATCTATTTACTCATCTATATGAATGGAGATTGAACATGTTATCTGGAGAAGTTGAGGAGAGGAAGCTAACCGGGTCTGAATACTCGATGGATTTCCCTTTCATCAATGAACAATTTACTGGTTTAAAACACAAGTATGGATACACTCAGGTCATTGATTCCAGGGCAAGCTCTTTATGTGGCATGACTAAATATGGATCCCTTGCCAAAATATATCTGGAGAAATCAAATTCTACAAAGTTTGGGGAGGGAAGGGGTGGGAACTTGTTGCCAAAGGTGGAATATCATAAGTTTGAGGACAACAACTTTTGCAGTGGGAGTGTTTTTGTCCCAAGAATTGGAGGCATCAAGGAAGATGATGGCTGGATTATCACTTTTGTTCACAATGAAGGAACTGATGTGACCCAAGTTCATATCATTGATGCACAGGATTTTGGAGGTGAAGCGATTGCGACACTTACAATGCCACAACGGGTGCCGTATGGTTTTCATGGAACCTTTGTGTCCATGCCGGCGTGTCAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPE65

Protein Analysis

328

Amino Acids

36.81

Weight (kDa)

6.06

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	2 - 321	9.1e-66	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002862)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35571 FvH4_2g35680 FvH4_2g35681 FvH4_2g35682 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520
malus_domestica	MD15G1094300.v1.1
prunus_persica	Prupe.1G449200_v2.0.a1 Prupe.1G449300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306121
rosa_laevigata	RLG00000010823 RLG00000016512
rosa_multiflora	Rmu_sc0000785.1_g000018 Rmu_sc0000785.1_g000021 Rmu_sc0003594.1_g000022
rosa_roxburghii	Rroxscaffold_7G00162040 Rroxscaffold_7G00177250
rosa_rugosa	Rorug06G0282200 Rorug06G0346800 Rorug06G0346800
rosa_samantha	Rh6AG459300 Rh6AG459400 Rh6BG441600 Rh6CG473800 Rh6DG460000
rosa_wichuraiana	Rw6G040040 Rw7G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	931
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccII	CGCG	1 cut(s)	224
AclWI	GGATC	2 cut(s)	648, 661
AcsI	RAATTY	3 cut(s)	86, 194, 685
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	248, 386, 794
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	4 cut(s)	91, 172, 418, 490
AjnI	CCWGG	2 cut(s)	373, 617
AluBI	AGCT	2 cut(s)	523, 627
AluI	AGCT	2 cut(s)	523, 627
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	2 cut(s)	648, 661
AlwNI	CAGNNNCTG	2 cut(s)	263, 380
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	3 cut(s)	86, 194, 685
AspLEI	GCGC	2 cut(s)	224, 373
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	3 cut(s)	263, 440, 908
AvaII	GGWCC	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	931
BanII	GRGCYC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	2 cut(s)	538, 809
BceAI	ACGGC	1 cut(s)	919
BciT130I	CCWGG	2 cut(s)	375, 619
BciVI	GTATCC	1 cut(s)	590
BclI	TGATCA	2 cut(s)	148, 430
BcnI	CCSGG	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	169
BfmI	CTRYAG	2 cut(s)	349, 444
BfuI	GTATCC	1 cut(s)	590
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	3 cut(s)	375, 529, 619
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	3 cut(s)	655, 933, 952
BmrFI	CCNGG	3 cut(s)	375, 529, 619
BmsI	GCATC	4 cut(s)	244, 313, 810, 868
BpmI	CTGGAG	2 cut(s)	522, 695
BpuMI	CCSGG	1 cut(s)	529
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	408, 618
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 386, 794
Bse118I	RCCGGY	1 cut(s)	967
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	375, 619
BseDI	CCNNGG	2 cut(s)	408, 618
BseGI	GGATG	3 cut(s)	151, 328, 362
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	3 cut(s)	248, 386, 794
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	2 cut(s)	53, 302
Bsh1236I	CGCG	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	931
BsiSI	CCGG	2 cut(s)	528, 968
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	3 cut(s)	248, 386, 794
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	770
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	79, 148, 430, 653
BspCNI	CTCAG	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	224
BspHI	TCATGA	2 cut(s)	109, 436
BspLI	GGNNCC	3 cut(s)	655, 933, 952
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	648, 661
BspT107I	GGYRCC	1 cut(s)	931
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	967
BsrI	ACTGG	1 cut(s)	580
BssAI	RCCGGY	1 cut(s)	967
BssECI	CCNNGG	2 cut(s)	408, 618
BssMI	GATC	4 cut(s)	79, 148, 430, 653
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	375, 619
Bst4CI	ACNGT	2 cut(s)	132, 386
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	625, 969
BstDEI	CTNAG	2 cut(s)	603, 981
BstF5I	GGATG	3 cut(s)	151, 328, 362
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	224, 373
BstKTI	GATC	4 cut(s)	82, 151, 433, 656
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	4 cut(s)	79, 148, 430, 653
BstNI	CCWGG	2 cut(s)	375, 619
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	3 cut(s)	373, 527, 617
BstSFI	CTRYAG	2 cut(s)	349, 444
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	653
BsuI	GTATCC	1 cut(s)	590
BtsCI	GGATG	3 cut(s)	151, 328, 362
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	2 cut(s)	391, 775
Cac8I	GCNNGC	2 cut(s)	625, 969
CaiI	CAGNNNCTG	2 cut(s)	263, 380
CciI	TCATGA	2 cut(s)	109, 436
CfoI	GCGC	2 cut(s)	224, 373
Cfr10I	RCCGGY	1 cut(s)	967
Cfr13I	GGNCC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	8 cut(s)	110, 184, 238, 437, 493, 640, 947, 964
CviJI	RGCY	5 cut(s)	348, 356, 523, 627, 819
CviKI_1	RGCY	5 cut(s)	348, 356, 523, 627, 819
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	603, 981
DpnI	GATC	4 cut(s)	81, 150, 432, 655
DpnII	GATC	4 cut(s)	79, 148, 430, 653
DraI	TTTAAA	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	373, 617
EcoRV	GATATC	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	8 cut(s)	113, 187, 241, 440, 496, 643, 950, 967
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	8 cut(s)	109, 183, 237, 436, 492, 639, 946, 963
FbaI	TGATCA	2 cut(s)	148, 430
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	3 cut(s)	138, 335, 349
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	68
GlaI	GCGC	2 cut(s)	223, 372
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	2 cut(s)	522, 695
HapII	CCGG	2 cut(s)	528, 968
HhaI	GCGC	2 cut(s)	224, 373
Hin1II	CATG	8 cut(s)	113, 187, 241, 440, 496, 643, 950, 967
Hin6I	GCGC	2 cut(s)	222, 371
HinP1I	GCGC	2 cut(s)	222, 371
HinfI	GANTC	6 cut(s)	120, 177, 228, 260, 440, 614
HpaII	CCGG	2 cut(s)	528, 968
HphI	GGTGA	3 cut(s)	263, 440, 908
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	6 cut(s)	110, 172, 380, 437, 501, 674
Hpy8I	GTNNAC	1 cut(s)	838
HpyAV	CCTTC	2 cut(s)	702, 839
HpyCH4III	ACNGT	2 cut(s)	132, 386
HpyCH4V	TGCA	8 cut(s)	14, 70, 257, 283, 294, 446, 768, 881
HpyF3I	CTNAG	2 cut(s)	603, 981
Hsp92II	CATG	8 cut(s)	113, 187, 241, 440, 496, 643, 950, 967
HspAI	GCGC	2 cut(s)	222, 371
KroI	GCCGGC	1 cut(s)	967
KroNI	GCCGGC	1 cut(s)	969
Ksp22I	TGATCA	2 cut(s)	148, 430
Kzo9I	GATC	4 cut(s)	79, 148, 430, 653
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	4 cut(s)	244, 313, 810, 868
MaeIII	GTNAC	2 cut(s)	121, 856
MalI	GATC	4 cut(s)	81, 150, 432, 655
MboI	GATC	4 cut(s)	79, 148, 430, 653
MboII	GAAGA	2 cut(s)	227, 821
MfeI	CAATTG	2 cut(s)	289, 310
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	7 cut(s)	86, 194, 289, 310, 569, 685, 792
MlyI	GAGTC	3 cut(s)	129, 171, 269
MmeI	TCCRAC	1 cut(s)	433
MroNI	GCCGGC	1 cut(s)	967
MseI	TTAA	1 cut(s)	581
MslI	CAYNNNNRTG	2 cut(s)	474, 591
MspI	CCGG	2 cut(s)	528, 968
MspR9I	CCNGG	3 cut(s)	375, 529, 619
MunI	CAATTG	2 cut(s)	289, 310
MvaI	CCWGG	2 cut(s)	375, 619
MvnI	CGCG	1 cut(s)	224
NaeI	GCCGGC	1 cut(s)	969
NciI	CCSGG	1 cut(s)	529
NdeII	GATC	4 cut(s)	79, 148, 430, 653
NgoMIV	GCCGGC	1 cut(s)	967
NlaIII	CATG	8 cut(s)	113, 187, 241, 440, 496, 643, 950, 967
NlaIV	GGNNCC	3 cut(s)	655, 933, 952
NmuCI	GTSAC	2 cut(s)	121, 856
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	2 cut(s)	109, 436
PciI	ACATGT	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	969
PfeI	GAWTC	3 cut(s)	228, 440, 614
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	3 cut(s)	128, 171, 268
PpsI	GAGTC	3 cut(s)	128, 171, 268
PpuMI	RGGWCCY	1 cut(s)	377
PscI	ACATGT	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	373, 617
PspGI	CCWGG	2 cut(s)	373, 617
PspN4I	GGNNCC	3 cut(s)	655, 933, 952
PspPI	GGNCC	1 cut(s)	377
PspPPI	RGGWCCY	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	2 cut(s)	263, 380
PsuI	RGATCY	1 cut(s)	653
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	2 cut(s)	474, 591
SaqAI	TTAA	1 cut(s)	581
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	4 cut(s)	79, 148, 430, 653
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	3 cut(s)	129, 171, 269
ScrFI	CCNGG	3 cut(s)	375, 529, 619
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	4 cut(s)	244, 313, 810, 868
SfcI	CTRYAG	2 cut(s)	349, 444
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	474, 591
Sse9I	AATT	7 cut(s)	86, 194, 289, 310, 569, 685, 792
StyD4I	CCNGG	3 cut(s)	373, 527, 617
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	132, 386
TaqI	TCGA	1 cut(s)	542
TasI	AATT	7 cut(s)	86, 194, 289, 310, 569, 685, 792
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	228, 440, 614
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	2 cut(s)	391, 775
TseFI	GTSAC	2 cut(s)	121, 856
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	2 cut(s)	121, 856
TspDTI	ATGAA	8 cut(s)	215, 411, 492, 547, 579, 857, 858, 935
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	391, 775
Van91I	CCANNNNNTGG	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	3 cut(s)	86, 194, 685
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.