Prupe.1G449300_v2.0.a1

Carotenoid 9,10(9',10')-cleavage dioxygenase 1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
37919695 .. 37923512
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G449300.1

Sequence Viewer

Length: 1668 bp
ATGGCATTCTCTTCTTATGCTAATTTACAAGTGCACGGGTCTTTCCAAAACCCTTTCATCTTCCACGGCTTAAATCACCTCAAAACCTCACTTTCCTCGTCTGTTAAGCCTCTATTCAAAGAGTTGCAGCAATTGCTTCCAAGGAAGGTCGATGTTTCTAAAACCATGAAAAACACTTCTGGGAAGATGTTAGATGCACTTGTGGACTCTATTTTCCAGTTTGTAGATCAACCGTTACTCCCATCTCAGAAAAACTTTGCACCAGTGGAAGAGATTGGAGACCATGTTGAGGTTACCTGGACCGAAGGAGAAATTCCCGCTGATTTTGCTGAAGGTGTTTTCATAAGAAATGGCATAAATCCTTTATTCGGAGGTTTAAAATCAGCAGTGTCGATTTTCAGACAAACACAGCACACTTGGGTAGAGGGAGAAGGCATGCTTCATGCACTCTACTTCAAAAAAGATCATGATGGAAGTTGGATTATCTCCTACAACAACAGATATGTTGAGACTGAAACATTTAAGCTAGAGAAACAGAAGCATAATAAGCCATGTTTCTTACCAGCCCTAGAAGGAGATGCAGCAGCAGTTGTAGCAGCATATATTCTAAATGGGTTGCGGTTTGGCACAATCAATAAACACTTGAGCAACACCAATAAAGCTCCAAACTCCGGAAAGCTAGTCATAATGGGGGTAGATGCAAAGAAACCTTACTATGTTTTGGGTGTTATCTCTGCTGATGGAAAATTACTGCATAAGGTTGATCTCGAGTTCAAAAGAAGTACGCTTAGCCATGATATAGGAGTCACACAGAAGTACAATGTAATCATTGATCATCCCCTCACGGTTGATGTAAAGAGAGTTACCATGGGTGGCCCATTATTGAAGTATGAAAAGGAAGAGTATGCAAGGATTGGAGTGATGCCACGTTATGGTGATGCAGAGTCAGTCAAGTGGTTTGAGGTACAAACCAATTGCACATTTCACATTCTCAATTGCTTTGAGGAGGCTAATGAGGTTGTAGTGAGGGGATGCAGGGCTCTCACATCCTTCTTGCCAGGTCCTGATGGTGTACTTAACAAATATGAGTGGTTCTCAAAAGGGTTCAACTTTGCAGATGATCATTCTGCAGAGACCGGATATTTGTTTTCTCGTTTATATGAATGGAGATTGAACATGGTCTCTGGAAATGTGGAGGAGAGAAATTTAACCGGAACTGATTTCTCCATGGATTTTCCTTTCATCAATGAACAAGTAACTGGTTTGAAACACAAGTATGGCTATACACAGGTCATTGATTCTATGGCAAGCTCTGACACTGGCATGGGAAAATATGGATCTCTAGCCAAATTATATTTGGAGGAATCGAATTCTACGTCATTTGTGGAGGGAAAGTGTGAGGATTTGATAAAAGTTGAATACCATAAGTTTGAGGAGAAAAACTTTTGCAGTGGAAGCGTTTTTGTGGCTAGGCATGGAGGGAAAGGCATGGAGGAAGATGATGGTTGGATTGTCACTTTTGTCCACAATGAAGAAACTGATGTCACCCAAGTTCATGTAATTGACGCAAAGAAATTTGAAAGTGAACCGATTGCGAAACTCACATTGCCACAGCGGGTGCCATATGGTTTTCATGCAACTTTTGTGTCAATGCCTTGTCAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

556

Amino Acids

62.49

Weight (kDa)

6.01

Isoelectric Point (pI)

26.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1618
AccB7I CCANNNNNTGG 1 cut(s) 932
AccIII TCCGGA 1 cut(s) 671
AciI CCGC 3 cut(s) 318, 619, 1615
AclWI GGATC 1 cut(s) 1345
AcsI RAATTY 4 cut(s) 312, 1204, 1369, 1574
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 4 cut(s) 784, 818, 966, 1074
AfiI CCNNNNNNNGG 4 cut(s) 289, 368, 671, 932
AgsI TTSAA 9 cut(s) 118, 457, 775, 886, 1108, 1174, 1267, 1418, 1580
AjnI CCWGG 2 cut(s) 296, 1057
AluBI AGCT 4 cut(s) 526, 662, 679, 1311
AluI AGCT 4 cut(s) 526, 662, 679, 1311
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 4 cut(s) 273, 503, 1127, 1186
Alw44I GTGCAC 1 cut(s) 32
AlwI GGATC 1 cut(s) 1345
AlwNI CAGNNNCTG 1 cut(s) 1064
Ama87I CYCGRG 1 cut(s) 767
Aor13HI TCCGGA 1 cut(s) 671
AoxI GGCC 1 cut(s) 874
ApaLI GTGCAC 1 cut(s) 32
ApeKI GCWGC 4 cut(s) 127, 581, 584, 596
ApoI RAATTY 4 cut(s) 312, 1204, 1369, 1574
ArsI GACNNNNNNTTYG 4 cut(s) 1126, 1158, 1361, 1393
AspS9I GGNCC 3 cut(s) 300, 875, 1061
AsuHPI GGTGA 3 cut(s) 68, 947, 1537
AvaI CYCGRG 1 cut(s) 767
AvaII GGWCC 2 cut(s) 300, 1061
BaeGI GKGCMC 1 cut(s) 36
BanI GGYRCC 1 cut(s) 1618
BanII GRGCYC 1 cut(s) 1042
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 4 cut(s) 139, 593, 596, 608
BccI CCATC 5 cut(s) 250, 464, 734, 1061, 1496
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 298, 1059
BclI TGATCA 2 cut(s) 832, 1120
BcoDI GTCTC 4 cut(s) 273, 503, 1127, 1186
BfaI CTAG 5 cut(s) 527, 569, 680, 1343, 1470
BfmI CTRYAG 1 cut(s) 1128
BisI GCNGC 4 cut(s) 128, 582, 585, 597
BlpI GCTNAGC 1 cut(s) 788
BlsI GCNGC 4 cut(s) 129, 583, 586, 598
Bme1390I CCNGG 2 cut(s) 298, 1059
Bme18I GGWCC 2 cut(s) 300, 1061
BmeT110I CYCGRG 1 cut(s) 767
BmgT120I GGNCC 3 cut(s) 300, 875, 1061
BmiI GGNNCC 1 cut(s) 1620
BmrFI CCNGG 2 cut(s) 298, 1059
BmsI GCATC 6 cut(s) 184, 568, 688, 912, 928, 1022
BplI GAGNNNNNCTC 2 cut(s) 1079, 1111
Bpu1102I GCTNAGC 1 cut(s) 788
BpuEI CTTGAG 1 cut(s) 664
BsaI GGTCTC 3 cut(s) 273, 1127, 1186
BsaJI CCNNGG 4 cut(s) 64, 140, 867, 1227
BsaWI WCCGGW 3 cut(s) 671, 1136, 1211
BsaXI ACNNNNNCTCC 6 cut(s) 222, 252, 270, 300, 1379, 1409
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 368, 671, 932
Bse1I ACTGG 4 cut(s) 217, 263, 1264, 1324
Bse3DI GCAATG 1 cut(s) 1604
BseAI TCCGGA 1 cut(s) 671
BseBI CCWGG 2 cut(s) 298, 1059
BseDI CCNNGG 4 cut(s) 64, 140, 867, 1227
BseGI GGATG 3 cut(s) 835, 1037, 1046
BseLI CCNNNNNNNGG 4 cut(s) 289, 368, 671, 932
BseMI GCAATG 1 cut(s) 1604
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 4 cut(s) 217, 263, 1264, 1324
BseRI GAGGAG 3 cut(s) 1019, 1211, 1448
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 4 cut(s) 139, 593, 596, 608
BshFI GGCC 1 cut(s) 876
BshNI GGYRCC 1 cut(s) 1618
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 3 cut(s) 672, 1137, 1212
BslI CCNNNNNNNGG 4 cut(s) 289, 368, 671, 932
BsmAI GTCTC 4 cut(s) 273, 503, 1127, 1186
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 876
Bso31I GGTCTC 3 cut(s) 273, 1127, 1186
BsoBI CYCGRG 1 cut(s) 767
Bsp1286I GDGCHC 2 cut(s) 36, 1042
Bsp13I TCCGGA 1 cut(s) 671
Bsp143I GATC 6 cut(s) 226, 463, 763, 832, 1120, 1337
Bsp1720I GCTNAGC 1 cut(s) 788
Bsp19I CCATGG 2 cut(s) 867, 1227
BspACI CCGC 3 cut(s) 318, 619, 1615
BspANI GGCC 1 cut(s) 876
BspCNI CTCAG 1 cut(s) 259
BspEI TCCGGA 1 cut(s) 671
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 1620
BspMAI CTGCAG 1 cut(s) 1132
BspPI GGATC 1 cut(s) 1345
BspT107I GGYRCC 1 cut(s) 1618
BspTNI GGTCTC 3 cut(s) 273, 1127, 1186
BsrDI GCAATG 1 cut(s) 1604
BsrI ACTGG 4 cut(s) 217, 263, 1264, 1324
BssECI CCNNGG 4 cut(s) 64, 140, 867, 1227
BssMI GATC 6 cut(s) 226, 463, 763, 832, 1120, 1337
BssT1I CCWWGG 3 cut(s) 140, 867, 1227
Bst2UI CCWGG 2 cut(s) 298, 1059
Bst4CI ACNGT 2 cut(s) 234, 847
Bst6I CTCTTC 3 cut(s) 16, 264, 894
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 437, 1309
BstDEI CTNAG 3 cut(s) 246, 788, 1665
BstDSI CCRYGG 3 cut(s) 64, 867, 1227
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 3 cut(s) 835, 1037, 1046
BstKTI GATC 6 cut(s) 229, 466, 766, 835, 1123, 1340
BstMAI GTCTC 4 cut(s) 273, 503, 1127, 1186
BstMBI GATC 6 cut(s) 226, 463, 763, 832, 1120, 1337
BstMWI GCNNNNNNNGC 5 cut(s) 133, 326, 547, 593, 1455
BstNI CCWGG 2 cut(s) 298, 1059
BstNSI RCATGY 1 cut(s) 439
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 296, 1057
BstSFI CTRYAG 1 cut(s) 1128
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 4 cut(s) 139, 593, 596, 608
BstX2I RGATCY 1 cut(s) 1337
BstYI RGATCY 1 cut(s) 1337
BsuRI GGCC 1 cut(s) 876
BtgI CCRYGG 3 cut(s) 64, 867, 1227
BtsCI GGATG 3 cut(s) 835, 1037, 1046
BtsI GCAGTG 2 cut(s) 393, 1456
BtsIMutI CAGTG 4 cut(s) 270, 393, 1317, 1456
Cac8I GCNNGC 2 cut(s) 437, 1309
CaiI CAGNNNCTG 1 cut(s) 1064
CciI TCATGA 1 cut(s) 466
Cfr13I GGNCC 3 cut(s) 300, 875, 1061
CseI GACGC 1 cut(s) 1574
Csp6I GTAC 4 cut(s) 783, 817, 965, 1073
CviQI GTAC 4 cut(s) 783, 817, 965, 1073
DdeI CTNAG 3 cut(s) 246, 788, 1665
DpnI GATC 6 cut(s) 228, 465, 765, 834, 1122, 1339
DpnII GATC 6 cut(s) 226, 463, 763, 832, 1120, 1337
DraI TTTAAA 1 cut(s) 378
Eam1104I CTCTTC 3 cut(s) 16, 264, 894
EarI CTCTTC 3 cut(s) 16, 264, 894
Eco130I CCWWGG 3 cut(s) 140, 867, 1227
Eco24I GRGCYC 1 cut(s) 1042
Eco31I GGTCTC 3 cut(s) 273, 1127, 1186
Eco47I GGWCC 2 cut(s) 300, 1061
Eco57I CTGAAG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 767
Eco91I GGTNACC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 1061
EcoO65I GGTNACC 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 1369
EcoRII CCWGG 2 cut(s) 296, 1057
EcoT14I CCWWGG 3 cut(s) 140, 867, 1227
EcoT38I GRGCYC 1 cut(s) 1042
ErhI CCWWGG 3 cut(s) 140, 867, 1227
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FauI CCCGC 2 cut(s) 325, 1608
FauNDI CATATG 1 cut(s) 1624
FbaI TGATCA 2 cut(s) 832, 1120
Fnu4HI GCNGC 4 cut(s) 128, 582, 585, 597
FokI GGATG 3 cut(s) 822, 1033, 1044
FriOI GRGCYC 1 cut(s) 1042
Fsp4HI GCNGC 4 cut(s) 128, 582, 585, 597
FspBI CTAG 5 cut(s) 527, 569, 680, 1343, 1470
GluI GCNGC 4 cut(s) 128, 582, 585, 597
HaeIII GGCC 1 cut(s) 876
HapII CCGG 3 cut(s) 672, 1137, 1212
HgaI GACGC 1 cut(s) 1574
HinfI GANTC 5 cut(s) 206, 804, 944, 1298, 1364
HpaII CCGG 3 cut(s) 672, 1137, 1212
HphI GGTGA 3 cut(s) 68, 947, 1537
Hpy166II GTNNAC 5 cut(s) 34, 205, 1073, 1525, 1586
Hpy188I TCNGA 4 cut(s) 249, 371, 401, 1315
Hpy188III TCNNGA 5 cut(s) 467, 672, 767, 1064, 1185
Hpy8I GTNNAC 5 cut(s) 34, 205, 1073, 1525, 1586
HpyAV CCTTC 6 cut(s) 139, 299, 326, 425, 566, 1060
HpyCH4III ACNGT 2 cut(s) 234, 847
HpyCH4IV ACGT 2 cut(s) 928, 1376
HpyF10VI GCNNNNNNNGC 5 cut(s) 133, 326, 547, 593, 1455
HpyF3I CTNAG 3 cut(s) 246, 788, 1665
HpySE526I ACGT 2 cut(s) 928, 1376
Kpn2I TCCGGA 1 cut(s) 671
Ksp22I TGATCA 2 cut(s) 832, 1120
Kzo9I GATC 6 cut(s) 226, 463, 763, 832, 1120, 1337
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 4 cut(s) 139, 593, 596, 608
LweI GCATC 6 cut(s) 184, 568, 688, 912, 928, 1022
MaeI CTAG 5 cut(s) 527, 569, 680, 1343, 1470
MaeII ACGT 2 cut(s) 928, 1376
MaeIII GTNAC 7 cut(s) 234, 292, 805, 862, 1255, 1513, 1543
MalI GATC 6 cut(s) 228, 465, 765, 834, 1122, 1339
MboI GATC 6 cut(s) 226, 463, 763, 832, 1120, 1337
MboII GAAGA 7 cut(s) 3, 52, 196, 281, 911, 1508, 1544
MfeI CAATTG 3 cut(s) 131, 973, 994
MflI RGATCY 1 cut(s) 1337
MhlI GDGCHC 2 cut(s) 36, 1042
MlyI GAGTC 3 cut(s) 200, 813, 953
MmeI TCCRAC 2 cut(s) 458, 1487
MroI TCCGGA 1 cut(s) 671
MseI TTAA 6 cut(s) 71, 105, 377, 522, 1077, 1208
MslI CAYNNNNRTG 2 cut(s) 1275, 1322
MspA1I CMGCKG 2 cut(s) 320, 1615
MspI CCGG 3 cut(s) 672, 1137, 1212
MspR9I CCNGG 2 cut(s) 298, 1059
MunI CAATTG 3 cut(s) 131, 973, 994
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 2 cut(s) 298, 1059
MwoI GCNNNNNNNGC 5 cut(s) 133, 326, 547, 593, 1455
NcoI CCATGG 2 cut(s) 867, 1227
NdeI CATATG 1 cut(s) 1624
NdeII GATC 6 cut(s) 226, 463, 763, 832, 1120, 1337
NlaIV GGNNCC 1 cut(s) 1620
NmuCI GTSAC 3 cut(s) 805, 1513, 1543
NspI RCATGY 1 cut(s) 439
PaeI GCATGC 1 cut(s) 439
PaeR7I CTCGAG 1 cut(s) 767
PagI TCATGA 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 1373
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 2 cut(s) 1298, 1364
PflMI CCANNNNNTGG 1 cut(s) 932
PkrI GCNGC 4 cut(s) 129, 583, 586, 598
PleI GAGTC 3 cut(s) 200, 812, 952
PpsI GAGTC 3 cut(s) 200, 812, 952
PpuMI RGGWCCY 1 cut(s) 1061
Psp5II RGGWCCY 1 cut(s) 1061
Psp6I CCWGG 2 cut(s) 296, 1057
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 2 cut(s) 296, 1057
PspN4I GGNNCC 1 cut(s) 1620
PspPI GGNCC 3 cut(s) 300, 875, 1061
PspPPI RGGWCCY 1 cut(s) 1061
PstI CTGCAG 1 cut(s) 1132
PstNI CAGNNNCTG 1 cut(s) 1064
PsuI RGATCY 1 cut(s) 1337
RsaI GTAC 4 cut(s) 784, 818, 966, 1074
RsaNI GTAC 4 cut(s) 783, 817, 965, 1073
RseI CAYNNNNRTG 2 cut(s) 1275, 1322
SaqAI TTAA 6 cut(s) 71, 105, 377, 522, 1077, 1208
SatI GCNGC 4 cut(s) 128, 582, 585, 597
Sau3AI GATC 6 cut(s) 226, 463, 763, 832, 1120, 1337
Sau96I GGNCC 3 cut(s) 300, 875, 1061
SchI GAGTC 3 cut(s) 200, 813, 953
ScrFI CCNGG 2 cut(s) 298, 1059
SduI GDGCHC 2 cut(s) 36, 1042
SfaNI GCATC 6 cut(s) 184, 568, 688, 912, 928, 1022
SfcI CTRYAG 1 cut(s) 1128
Sfr274I CTCGAG 1 cut(s) 767
SinI GGWCC 2 cut(s) 300, 1061
SlaI CTCGAG 1 cut(s) 767
SmiMI CAYNNNNRTG 2 cut(s) 1275, 1322
SmlI CTYRAG 2 cut(s) 643, 767
SmoI CTYRAG 2 cut(s) 643, 767
SphI GCATGC 1 cut(s) 439
SsiI CCGC 3 cut(s) 318, 619, 1615
SspMI CTAG 5 cut(s) 527, 569, 680, 1343, 1470
StyD4I CCNGG 2 cut(s) 296, 1057
StyI CCWWGG 3 cut(s) 140, 867, 1227
TaaI ACNGT 2 cut(s) 234, 847
TaiI ACGT 2 cut(s) 931, 1379
TaqI TCGA 4 cut(s) 150, 392, 768, 1367
TaqII GACCGA 1 cut(s) 317
TatI WGTACW 2 cut(s) 816, 1072
TfiI GAWTC 2 cut(s) 1298, 1364
Tru1I TTAA 6 cut(s) 71, 105, 377, 522, 1077, 1208
Tru9I TTAA 6 cut(s) 71, 105, 377, 522, 1077, 1208
TscAI CASTG 4 cut(s) 270, 393, 1324, 1456
TseFI GTSAC 3 cut(s) 805, 1513, 1543
TseI GCWGC 4 cut(s) 127, 581, 584, 596
Tsp45I GTSAC 3 cut(s) 805, 1513, 1543
TspRI CASTG 4 cut(s) 270, 393, 1324, 1456
Van91I CCANNNNNTGG 1 cut(s) 932
VneI GTGCAC 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 300, 1061
XapI RAATTY 4 cut(s) 312, 1204, 1369, 1574
XceI RCATGY 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 1354
XhoI CTCGAG 1 cut(s) 767
XspI CTAG 5 cut(s) 527, 569, 680, 1343, 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.