Rh6AG459400

Carotenoid 9,10(9',10')-cleavage dioxygenase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002862
Physical Location & Seq
Reverse (-)
64233404 .. 64243497
10094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG459400.1

Sequence Viewer

Length: 345 bp
ATGGCAATCTCTTCGTATAATGCTTTACAAGTAAACGGGTCATTGCAAAGCTGTCTCATCTCCCACAGCTTTAATCATCTCAAAACCTCACTTTCCTCAACTGTTAAGCCTTTCTTCAAAGAGTTGCAGCAATTGCTTCCGATGAAGGTGGATGTCTCGAAAACCATGAAGAACACTTCCGGGAAAATGTTAGATGCAGTTGTGGACTCCCTGTTCCAATTTGTGGATATACCCTCACTCCCATCTCAGAAAAACTTTTTACCTATTGAAGAGATCGGAGAACTTGTTGAAGTCACCTGCACCTTAGGAGAAATTCCTGCTGATTTTGCTGAGGGTTTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RPE65

Protein Analysis

114

Amino Acids

12.55

Weight (kDa)

5.19

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 223
AcsI RAATTY 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 3 cut(s) 118, 269, 290
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 51, 69
AluI AGCT 2 cut(s) 51, 69
Alw26I GTCTC 2 cut(s) 59, 160
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 286
AxyI CCTNAGG 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 250
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 59, 160
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 184
Bpu10I CCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 181
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse21I CCTNAGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 41
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 260, 321
BseXI GCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 2 cut(s) 59, 160
Bsp143I GATC 1 cut(s) 273
BspCNI CTCAG 2 cut(s) 259, 322
BspMI ACCTGC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 41
BssMI GATC 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 2 cut(s) 16, 264
BstAPI GCANNNNNTGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 246, 304, 330
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 2 cut(s) 59, 160
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 2 cut(s) 133, 326
BstSCI CCNGG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 305
CviAII CATG 1 cut(s) 166
CviJI RGCY 3 cut(s) 51, 69, 109
CviKI_1 RGCY 3 cut(s) 51, 69, 109
DdeI CTNAG 3 cut(s) 246, 304, 330
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 16, 264
EarI CTCTTC 2 cut(s) 16, 264
Eco81I CCTNAGG 1 cut(s) 304
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 18, 167, 230
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
HapII CCGG 1 cut(s) 180
Hin1II CATG 1 cut(s) 169
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 34, 205
Hpy188I TCNGA 3 cut(s) 141, 249, 278
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 34, 205
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 4 cut(s) 46, 127, 197, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 326
HpyF3I CTNAG 3 cut(s) 246, 304, 330
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 1 cut(s) 273
LpnPI CCDG 4 cut(s) 193, 224, 310, 330
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 4 cut(s) 3, 106, 181, 281
MfeI CAATTG 1 cut(s) 131
MluCI AATT 3 cut(s) 131, 218, 312
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 4 cut(s) 97, 106, 244, 325
MseI TTAA 2 cut(s) 72, 105
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 133, 326
NciI CCSGG 1 cut(s) 181
NdeII GATC 1 cut(s) 273
NlaIII CATG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 292
PaqCI CACCTGC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
SaqAI TTAA 2 cut(s) 72, 105
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 273
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 181
SetI ASST 7 cut(s) 53, 71, 89, 150, 265, 299, 305
SfaNI GCATC 1 cut(s) 184
Sse9I AATT 3 cut(s) 131, 218, 312
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 158
TasI AATT 3 cut(s) 131, 218, 312
Tru1I TTAA 2 cut(s) 72, 105
Tru9I TTAA 2 cut(s) 72, 105
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 158, 182, 329
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.