Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000785.1

Orthogroup ID

OG0002862

Physical Location & Seq

Genomic Coordinates Forward (+)

102953 .. 103375

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000785.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggcaatctcttcgtataatgctttgcaagtaaacgggtcattgcaaagccgtctcatctcccacagctttaatcatctcaaaacctcactttcctcaactgttaagcctttcttcaaagagttgcagcaattgcttccgatgaaggtggatgtctcgaaaaccatgaagaacacttccgggaaaatgttagatgtagttgtggactccctgttccaatttgtggatataccctcactcccatctcaggttattattttcagtctgacaattaatgatatattgctacagttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPE65

Protein Analysis

98

Amino Acids

10.93

Weight (kDa)

9.16

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002862)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35571 FvH4_2g35680 FvH4_2g35681 FvH4_2g35682 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520
malus_domestica	MD15G1094300.v1.1
prunus_persica	Prupe.1G449200_v2.0.a1 Prupe.1G449300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306121
rosa_laevigata	RLG00000010823 RLG00000016512
rosa_multiflora	Rmu_sc0000785.1_g000018 Rmu_sc0000785.1_g000021 Rmu_sc0003594.1_g000022
rosa_roxburghii	Rroxscaffold_7G00162040 Rroxscaffold_7G00177250
rosa_rugosa	Rorug06G0282200 Rorug06G0346800 Rorug06G0346800
rosa_samantha	Rh6AG459300 Rh6AG459400 Rh6BG441600 Rh6CG473800 Rh6DG460000
rosa_wichuraiana	Rw6G040040 Rw7G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	223, 247
AgsI	TTSAA	1 cut(s)	118
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	59, 160
ApeKI	GCWGC	1 cut(s)	127
AseI	ATTAAT	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	59, 160
BfmI	CTRYAG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 247
Bse3DI	GCAATG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	223, 247
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	223, 247
BsmAI	GTCTC	2 cut(s)	59, 160
BsmBI	CGTCTC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	103, 291
Bst6I	CTCTTC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	157
BstMAI	GTCTC	2 cut(s)	59, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	157
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	3 cut(s)	51, 69, 109
CviKI_1	RGCY	3 cut(s)	51, 69, 109
DdeI	CTNAG	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	1 cut(s)	169
FaiI	YATR	5 cut(s)	18, 167, 230, 281, 295
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	1 cut(s)	169
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	180
Hpy166II	GTNNAC	2 cut(s)	34, 205
Hpy188I	TCNGA	2 cut(s)	141, 267
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	2 cut(s)	34, 205
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	103, 291
HpyCH4V	TGCA	3 cut(s)	28, 46, 127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	193, 224, 233
Lsp1109I	GCAGC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	3, 106, 181
MfeI	CAATTG	1 cut(s)	131
MluCI	AATT	3 cut(s)	131, 218, 270
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	3 cut(s)	97, 106, 244
MseI	TTAA	3 cut(s)	72, 105, 273
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	181
MunI	CAATTG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	181
NlaIII	CATG	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	72, 105, 273
SatI	GCNGC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	4 cut(s)	71, 89, 150, 252
SfcI	CTRYAG	1 cut(s)	287
SgeI	CNNG	8 cut(s)	41, 49, 169, 178, 192, 193, 223, 260
Sse9I	AATT	3 cut(s)	131, 218, 270
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	103, 291
TaqI	TCGA	1 cut(s)	158
TasI	AATT	3 cut(s)	131, 218, 270
Tru1I	TTAA	3 cut(s)	72, 105, 273
Tru9I	TTAA	3 cut(s)	72, 105, 273
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	158, 182
Van91I	CCANNNNNTGG	1 cut(s)	223
VspI	ATTAAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.