Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003594.1

Orthogroup ID

OG0002862

Physical Location & Seq

Genomic Coordinates Forward (+)

132805 .. 134828

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003594.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgagcaacaccaatgttttcgagcattcagggagaatttactcaattgcagagaactatctgcctcaagaggcggacatttcaaccttggaaaccatttgtgattgggatgtcaatggaacttgggatcgacctttcacaagtcatccaaagaaagctccaaacggagagttagtcgtgatggggacagatgcatggaaaccttactatgttttaggggtcatctctgctgatggaaagaaagtgcacaaggttgatctcaaatttaaaagatgtgtgttcagtcatgatataggagtcacgcaaaactacaatgtaatccttgatcatcccctcacattggatgtaaagagactcaccatgggaggccaaataatgcagtatgaaaaggaagagtacgctagaattggggtcatgcctcgttatggagatgcagagtctgtcaaatggtttgaggtacagaccaattgcacacttcactttctcaattgctttgaggatggtaatcaggttatagtcaggggatgtagggctctcacatctgttgtatcagatcctgacggcagcctaaacccttatgaatggttctccaaagggttcatctttgctggtgatcatgattctgcagaggttggatatctctttacgcatttatacgaatggagattgaacatgttatctgggaaagttgaggagagaaacttaactggatccaaatactccatggatttccctttcatcaatgaacaatttattggtttaaaacgcaagtatggatatactcaggtcattgattccggggcaagctctatatgtggcatggctaaatttggatctctagccaaattatatttggaagaatcagattctacaaaatctgtggagggaaggggtgagcacttgataaaggtggaataccataagtttgaggacaacaacttttgcagtggaagtgcttttgtccccagaaatggaggcatcgaggaagatgatggctggattatcacttttgtccacaatgaagaaactgatgtgatccaagttcatatcattgatgcacaggattttgaaggtgaagcgattgcgaaacttacattgccacaacgggtgccctatggttttcattcaacctttctgtcaatgccagcttgtcaatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPE65

Protein Analysis

386

Amino Acids

43.69

Weight (kDa)

5.15

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002862)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35571 FvH4_2g35680 FvH4_2g35681 FvH4_2g35682 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520
malus_domestica	MD15G1094300.v1.1
prunus_persica	Prupe.1G449200_v2.0.a1 Prupe.1G449300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306121
rosa_laevigata	RLG00000010823 RLG00000016512
rosa_multiflora	Rmu_sc0000785.1_g000018 Rmu_sc0000785.1_g000021 Rmu_sc0003594.1_g000022
rosa_roxburghii	Rroxscaffold_7G00162040 Rroxscaffold_7G00177250
rosa_rugosa	Rorug06G0282200 Rorug06G0346800 Rorug06G0346800
rosa_samantha	Rh6AG459300 Rh6AG459400 Rh6BG441600 Rh6CG473800 Rh6DG460000
rosa_wichuraiana	Rw6G040040 Rw7G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1108
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	6 cut(s)	135, 548, 705, 718, 841, 1030
AcsI	RAATTY	3 cut(s)	36, 263, 827
AfaI	GTAC	2 cut(s)	398, 459
AfiI	CCNNNNNNNGG	3 cut(s)	340, 425, 971
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	4 cut(s)	84, 670, 1070, 1128
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AluBI	AGCT	3 cut(s)	158, 807, 1148
AluI	AGCT	3 cut(s)	158, 807, 1148
Alw21I	GWGCWC	2 cut(s)	249, 900
Alw26I	GTCTC	1 cut(s)	346
Alw44I	GTGCAC	1 cut(s)	245
AlwI	GGATC	6 cut(s)	135, 548, 705, 718, 841, 1030
AlwNI	CAGNNNCTG	2 cut(s)	440, 557
AoxI	GGCC	1 cut(s)	367
ApaLI	GTGCAC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	564
ApoI	RAATTY	3 cut(s)	36, 263, 827
AsuC2I	CCSGG	1 cut(s)	799
AsuHPI	GGTGA	4 cut(s)	349, 623, 905, 1085
BaeGI	GKGCMC	2 cut(s)	249, 1113
BamHI	GGATCC	1 cut(s)	710
BanI	GGYRCC	1 cut(s)	1108
BanII	GRGCYC	1 cut(s)	535
Bbv12I	GWGCWC	2 cut(s)	249, 900
BbvI	GCAGC	1 cut(s)	576
BccI	CCATC	4 cut(s)	175, 227, 494, 986
BceAI	ACGGC	1 cut(s)	577
BclI	TGATCA	2 cut(s)	325, 613
BcnI	CCSGG	1 cut(s)	799
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	402, 839
BfmI	CTRYAG	1 cut(s)	624
BisI	GCNGC	1 cut(s)	565
BlsI	GCNGC	1 cut(s)	566
Bme1390I	CCNGG	1 cut(s)	799
BmiI	GGNNCC	2 cut(s)	712, 1110
BmrFI	CCNGG	1 cut(s)	799
BmsI	GCATC	4 cut(s)	181, 421, 987, 1045
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	799
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	4 cut(s)	87, 360, 723, 798
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 425, 971
Bse1I	ACTGG	1 cut(s)	712
Bse3DI	GCAATG	1 cut(s)	1094
Bse8I	GATNNNNATC	1 cut(s)	504
BseDI	CCNNGG	4 cut(s)	87, 360, 723, 798
BseGI	GGATG	6 cut(s)	115, 145, 328, 349, 505, 530
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	340, 425, 971
BseMI	GCAATG	1 cut(s)	1094
BseMII	CTCAG	1 cut(s)	797
BseNI	ACTGG	1 cut(s)	712
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	2 cut(s)	249, 1113
BseXI	GCAGC	1 cut(s)	576
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	1 cut(s)	1108
BsiHKAI	GWGCWC	2 cut(s)	249, 900
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	2 cut(s)	199, 947
BslI	CCNNNNNNNGG	3 cut(s)	340, 425, 971
BsmAI	GTCTC	1 cut(s)	346
BsmFI	GGGAC	2 cut(s)	199, 947
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	369
Bsp1286I	GDGCHC	4 cut(s)	249, 535, 900, 1113
Bsp143I	GATC	8 cut(s)	127, 256, 325, 553, 613, 710, 833, 1035
Bsp19I	CCATGG	2 cut(s)	360, 723
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	796
BspHI	TCATGA	2 cut(s)	286, 616
BspLI	GGNNCC	2 cut(s)	712, 1110
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	6 cut(s)	135, 548, 705, 718, 841, 1030
BspT107I	GGYRCC	1 cut(s)	1108
BsrDI	GCAATG	1 cut(s)	1094
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	4 cut(s)	87, 360, 723, 798
BssMI	GATC	8 cut(s)	127, 256, 325, 553, 613, 710, 833, 1035
BssT1I	CCWWGG	3 cut(s)	87, 360, 723
Bst6I	CTCTTC	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	805, 1146
BstDEI	CTNAG	2 cut(s)	783, 1158
BstDSI	CCRYGG	2 cut(s)	360, 723
BstF5I	GGATG	6 cut(s)	115, 145, 328, 349, 505, 530
BstKTI	GATC	8 cut(s)	130, 259, 328, 556, 616, 713, 836, 1038
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	8 cut(s)	127, 256, 325, 553, 613, 710, 833, 1035
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	797
BstSFI	CTRYAG	1 cut(s)	624
BstSLI	GKGCMC	2 cut(s)	249, 1113
BstV1I	GCAGC	1 cut(s)	576
BstX2I	RGATCY	3 cut(s)	553, 710, 833
BstYI	RGATCY	3 cut(s)	553, 710, 833
BsuRI	GGCC	1 cut(s)	369
BtgI	CCRYGG	2 cut(s)	360, 723
BtsCI	GGATG	6 cut(s)	115, 145, 328, 349, 505, 530
BtsI	GCAGTG	1 cut(s)	952
BtsIMutI	CAGTG	1 cut(s)	952
Cac8I	GCNNGC	2 cut(s)	805, 1146
CaiI	CAGNNNCTG	2 cut(s)	440, 557
CciI	TCATGA	2 cut(s)	286, 616
Csp6I	GTAC	2 cut(s)	397, 458
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviAII	CATG	8 cut(s)	195, 287, 361, 415, 617, 673, 724, 820
CviJI	RGCY	9 cut(s)	158, 369, 533, 567, 807, 824, 842, 996, 1148
CviKI_1	RGCY	9 cut(s)	158, 369, 533, 567, 807, 824, 842, 996, 1148
CviQI	GTAC	2 cut(s)	397, 458
DdeI	CTNAG	2 cut(s)	783, 1158
DpnI	GATC	8 cut(s)	129, 258, 327, 555, 615, 712, 835, 1037
DpnII	GATC	8 cut(s)	127, 256, 325, 553, 613, 710, 833, 1035
DraI	TTTAAA	2 cut(s)	268, 762
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	3 cut(s)	87, 360, 723
Eco24I	GRGCYC	1 cut(s)	535
Eco32I	GATATC	1 cut(s)	638
EcoRV	GATATC	1 cut(s)	638
EcoT14I	CCWWGG	3 cut(s)	87, 360, 723
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	535
ErhI	CCWWGG	3 cut(s)	87, 360, 723
FaeI	CATG	8 cut(s)	198, 290, 364, 418, 620, 676, 727, 823
FaqI	GGGAC	2 cut(s)	199, 947
FatI	CATG	8 cut(s)	194, 286, 360, 414, 616, 672, 723, 819
FbaI	TGATCA	2 cut(s)	325, 613
Fnu4HI	GCNGC	1 cut(s)	565
FokI	GGATG	6 cut(s)	122, 132, 315, 356, 512, 537
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	1 cut(s)	565
FspBI	CTAG	2 cut(s)	402, 839
GluI	GCNGC	1 cut(s)	565
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	798
Hin1II	CATG	8 cut(s)	198, 290, 364, 418, 620, 676, 727, 823
HinfI	GANTC	7 cut(s)	297, 354, 437, 620, 794, 860, 866
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	4 cut(s)	349, 623, 905, 1085
Hpy166II	GTNNAC	2 cut(s)	247, 1015
Hpy188I	TCNGA	2 cut(s)	553, 865
Hpy188III	TCNNGA	5 cut(s)	68, 178, 287, 557, 617
Hpy8I	GTNNAC	2 cut(s)	247, 1015
HpyAV	CCTTC	2 cut(s)	882, 1064
HpyCH4V	TGCA	9 cut(s)	50, 194, 247, 379, 434, 471, 626, 945, 1058
HpyF3I	CTNAG	2 cut(s)	783, 1158
Hsp92II	CATG	8 cut(s)	198, 290, 364, 418, 620, 676, 727, 823
Ksp22I	TGATCA	2 cut(s)	325, 613
Kzo9I	GATC	8 cut(s)	127, 256, 325, 553, 613, 710, 833, 1035
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	1 cut(s)	576
LweI	GCATC	4 cut(s)	181, 421, 987, 1045
MaeI	CTAG	2 cut(s)	402, 839
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	8 cut(s)	129, 258, 327, 555, 615, 712, 835, 1037
MboI	GATC	8 cut(s)	127, 256, 325, 553, 613, 710, 833, 1035
MboII	GAAGA	4 cut(s)	404, 869, 998, 1034
MfeI	CAATTG	3 cut(s)	45, 466, 487
MflI	RGATCY	3 cut(s)	553, 710, 833
MhlI	GDGCHC	4 cut(s)	249, 535, 900, 1113
MluCI	AATT	9 cut(s)	36, 45, 263, 405, 466, 487, 749, 827, 845
MlyI	GAGTC	3 cut(s)	306, 348, 446
MmeI	TCCRAC	1 cut(s)	613
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	3 cut(s)	267, 704, 761
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	1 cut(s)	799
MunI	CAATTG	3 cut(s)	45, 466, 487
Mva1269I	GAATGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	799
NcoI	CCATGG	2 cut(s)	360, 723
NdeII	GATC	8 cut(s)	127, 256, 325, 553, 613, 710, 833, 1035
NlaIII	CATG	8 cut(s)	198, 290, 364, 418, 620, 676, 727, 823
NlaIV	GGNNCC	2 cut(s)	712, 1110
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	676
PagI	TCATGA	2 cut(s)	286, 616
PciI	ACATGT	1 cut(s)	672
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	4 cut(s)	620, 794, 860, 866
PkrI	GCNGC	1 cut(s)	566
PleI	GAGTC	3 cut(s)	305, 348, 445
PpsI	GAGTC	3 cut(s)	305, 348, 445
PscI	ACATGT	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	712, 1110
PstI	CTGCAG	1 cut(s)	628
PstNI	CAGNNNCTG	2 cut(s)	440, 557
PsuI	RGATCY	3 cut(s)	553, 710, 833
RsaI	GTAC	2 cut(s)	398, 459
RsaNI	GTAC	2 cut(s)	397, 458
SaqAI	TTAA	3 cut(s)	267, 704, 761
SatI	GCNGC	1 cut(s)	565
Sau3AI	GATC	8 cut(s)	127, 256, 325, 553, 613, 710, 833, 1035
SchI	GAGTC	3 cut(s)	306, 348, 446
ScrFI	CCNGG	1 cut(s)	799
SduI	GDGCHC	4 cut(s)	249, 535, 900, 1113
SfaNI	GCATC	4 cut(s)	181, 421, 987, 1045
SfcI	CTRYAG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	9 cut(s)	36, 45, 263, 405, 466, 487, 749, 827, 845
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	402, 839
StyD4I	CCNGG	1 cut(s)	797
StyI	CCWWGG	3 cut(s)	87, 360, 723
TaqI	TCGA	3 cut(s)	21, 130, 981
TasI	AATT	9 cut(s)	36, 45, 263, 405, 466, 487, 749, 827, 845
TfiI	GAWTC	4 cut(s)	620, 794, 860, 866
Tru1I	TTAA	3 cut(s)	267, 704, 761
Tru9I	TTAA	3 cut(s)	267, 704, 761
TscAI	CASTG	1 cut(s)	952
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	564
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	8 cut(s)	399, 589, 594, 727, 759, 1034, 1035, 1112
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	952
VneI	GTGCAC	1 cut(s)	245
XapI	RAATTY	3 cut(s)	36, 263, 827
XceI	RCATGY	1 cut(s)	676
XcmI	CCANNNNNNNNNTGG	2 cut(s)	721, 850
XspI	CTAG	2 cut(s)	402, 839
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.