Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000785.1

Orthogroup ID

OG0002862

Physical Location & Seq

Genomic Coordinates Forward (+)

114516 .. 120243

Gene Structure 5728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000785.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

atgcagtcgaactttaatcttggttacgagatttcagaggctgcttcaatcttggttaccgcagatggcgaagcatattgcgtgtggagctactgccgagggttgaaggaggggtctttgatgcgcaggggcagcgagggtgcatgggcggtggcgaggctagcacgggctagggcaacgaaggcatcggcggtggctaggaaaaactttttacctgttgaagagatcggagaacttgttgaggtcacctgcaccttaggagaaattcctgctgattttgctgagggtgttttcatcagaaatggcagcaatcctttgtttggatgtctaaaatcagcagtttcgatcttcggagaatcacacaatatttgggtagagggagaaggaatgctccatgctctatacttcaagaaagacgatgattgtggaagttggatcatctcatataagaacagatatgttgagagtgagacatttaagatagaaactcaacgaaataaaccaggtttcttaccggcccttgtgggagacgctccagcaattatagcagcatatcttttaaattcgggagaatttactcaattgcagagaactatctgcctcaagaggtggacatttcaaccttggaaaccatttgtgattgggatgtcaatggaacttgggatcgacctttcacaagtcatccaaagctacaatgtaatccttgattatcccctcacattggatgtaaagagactcaccatgggaggccgaatactgcagtatgaaaaggaagagtacgctagaattggggtcatgcctcgttatggagatgcagagtctgtcaaatggtttgaggtacagaccaattgcacatttcacattctcaattgctttgaggatgctaatcaggttatagtcaggggatgtagggctctcacatcttttttatcagatcctgacggcagccgaaacccttatgaatggttctccaaagggttcatctttgctggtgatcatgattctgcagaggagggaaggggtgagcacttgataaaggtggaataccataagtttgaggacaacaacttttgcagtggaagtgcttttgtccccagaaatggaggcatcgaggaagatgatggctggattatcacttttgtccacaatgaagaaactgatgtgacccaagttcatatcattgatgcacaggattttgaaggtgaagcgattgcgaaacttacattgccacaacgggtgccctatggttttcattcaacctttctatctttgattgcatttttggatgggatctcagagaaagacgagatcgatttttctgagattgtattttggattcaaatccaccatgtgcctttggggatgatttttgttggtacaactagaagtaccggccggaaagttggcgagttcatggaggtggaagatccggtcatgatatttgactatgagatctcagatctgggttttctcttacgtatctcaaatttcagatctgtccccaaatctcaaatcacttctgtggtactatcggtttctctcgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPE65

Protein Analysis

515

Amino Acids

57.89

Weight (kDa)

4.94

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002862)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35571 FvH4_2g35680 FvH4_2g35681 FvH4_2g35682 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520 FvH4_5g00520
malus_domestica	MD15G1094300.v1.1
prunus_persica	Prupe.1G449200_v2.0.a1 Prupe.1G449300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0306121
rosa_laevigata	RLG00000010823 RLG00000016512
rosa_multiflora	Rmu_sc0000785.1_g000018 Rmu_sc0000785.1_g000021 Rmu_sc0003594.1_g000022
rosa_roxburghii	Rroxscaffold_7G00162040 Rroxscaffold_7G00177250
rosa_rugosa	Rorug06G0282200 Rorug06G0346800 Rorug06G0346800
rosa_samantha	Rh6AG459300 Rh6AG459400 Rh6BG441600 Rh6CG473800 Rh6DG460000
rosa_wichuraiana	Rw6G040040 Rw7G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc16I	TGCGCA	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	1237
AciI	CCGC	3 cut(s)	60, 149, 191
AclWI	GGATC	5 cut(s)	443, 671, 929, 1298, 1421
AcoI	YGGCCR	1 cut(s)	1393
AcsI	RAATTY	4 cut(s)	264, 562, 572, 1486
AdeI	CACNNNGTG	1 cut(s)	1351
AfaI	GTAC	5 cut(s)	779, 840, 1378, 1390, 1527
AfiI	CCNNNNNNNGG	4 cut(s)	320, 721, 806, 1100
AgsI	TTSAA	8 cut(s)	48, 106, 221, 409, 620, 1199, 1257, 1340
AjnI	CCWGG	1 cut(s)	502
AleI	CACNNNNGTG	1 cut(s)	1520
AluBI	AGCT	2 cut(s)	90, 690
AluI	AGCT	2 cut(s)	90, 690
Alw21I	GWGCWC	1 cut(s)	1029
Alw26I	GTCTC	3 cut(s)	464, 522, 727
AlwI	GGATC	5 cut(s)	443, 671, 929, 1298, 1421
AlwNI	CAGNNNCTG	3 cut(s)	41, 821, 938
AoxI	GGCC	3 cut(s)	516, 748, 1393
ApeKI	GCWGC	5 cut(s)	41, 132, 306, 548, 945
ApoI	RAATTY	4 cut(s)	264, 562, 572, 1486
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	5 cut(s)	238, 730, 1004, 1034, 1214
AsuNHI	GCTAGC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	1242
BanI	GGYRCC	1 cut(s)	1237
BanII	GRGCYC	1 cut(s)	916
Bbv12I	GWGCWC	1 cut(s)	1029
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	5 cut(s)	28, 144, 318, 560, 957
BccI	CCATC	3 cut(s)	59, 1115, 1280
BceAI	ACGGC	1 cut(s)	958
BciT130I	CCWGG	1 cut(s)	504
BclI	TGATCA	1 cut(s)	994
BcoDI	GTCTC	3 cut(s)	464, 522, 727
BfaI	CTAG	6 cut(s)	161, 171, 198, 783, 1383, 1546
BfmI	CTRYAG	2 cut(s)	758, 1005
BfuAI	ACCTGC	1 cut(s)	257
BglII	AGATCT	3 cut(s)	1452, 1459, 1493
BisI	GCNGC	5 cut(s)	42, 133, 307, 549, 946
BlsI	GCNGC	5 cut(s)	43, 134, 308, 550, 947
Bme1390I	CCNGG	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	1 cut(s)	1239
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	6 cut(s)	111, 194, 802, 871, 1116, 1174
BmtI	GCTAGC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	587
Bsa29I	ATCGAT	1 cut(s)	1311
BsaAI	YACGTR	1 cut(s)	1478
BsaBI	GATNNNNATC	2 cut(s)	885, 1340
BsaJI	CCNNGG	3 cut(s)	97, 623, 741
BsaWI	WCCGGW	1 cut(s)	1429
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	4 cut(s)	320, 721, 806, 1100
Bse118I	RCCGGY	2 cut(s)	514, 1391
Bse21I	CCTNAGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	1223
Bse8I	GATNNNNATC	2 cut(s)	885, 1340
BseBI	CCWGG	1 cut(s)	504
BseCI	ATCGAT	1 cut(s)	1311
BseDI	CCNNGG	3 cut(s)	97, 623, 741
BseGI	GGATG	8 cut(s)	329, 651, 681, 730, 886, 911, 1291, 1368
BseJI	GATNNNNATC	2 cut(s)	885, 1340
BseLI	CCNNNNNNNGG	4 cut(s)	320, 721, 806, 1100
BseMI	GCAATG	1 cut(s)	1223
BseMII	CTCAG	4 cut(s)	273, 1308, 1311, 1470
BseRI	GAGGAG	1 cut(s)	1025
BseSI	GKGCMC	1 cut(s)	1242
BseX3I	CGGCCG	1 cut(s)	1393
BseXI	GCAGC	5 cut(s)	28, 144, 318, 560, 957
BsgI	GTGCAG	1 cut(s)	235
Bsh1285I	CGRYCG	1 cut(s)	1396
BshFI	GGCC	3 cut(s)	518, 750, 1395
BshNI	GGYRCC	1 cut(s)	1237
BshVI	ATCGAT	1 cut(s)	1311
BsiEI	CGRYCG	1 cut(s)	1396
BsiHKAI	GWGCWC	1 cut(s)	1029
BsiSI	CCGG	4 cut(s)	515, 1392, 1396, 1430
BslFI	GGGAC	2 cut(s)	1076, 1484
BslI	CCNNNNNNNGG	4 cut(s)	320, 721, 806, 1100
BsmAI	GTCTC	3 cut(s)	464, 522, 727
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	2 cut(s)	1076, 1484
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	3 cut(s)	518, 750, 1395
Bsp1286I	GDGCHC	3 cut(s)	916, 1029, 1242
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	3 cut(s)	60, 149, 191
BspANI	GGCC	3 cut(s)	518, 750, 1395
BspCNI	CTCAG	4 cut(s)	274, 1307, 1312, 1469
BspDI	ATCGAT	1 cut(s)	1311
BspHI	TCATGA	2 cut(s)	997, 1434
BspLI	GGNNCC	1 cut(s)	1239
BspMAI	CTGCAG	2 cut(s)	762, 1009
BspMI	ACCTGC	1 cut(s)	257
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	5 cut(s)	443, 671, 929, 1298, 1421
BspT107I	GGYRCC	1 cut(s)	1237
BsrDI	GCAATG	1 cut(s)	1223
BsrFI	RCCGGY	2 cut(s)	514, 1391
BssAI	RCCGGY	2 cut(s)	514, 1391
BssECI	CCNNGG	3 cut(s)	97, 623, 741
BssT1I	CCWWGG	2 cut(s)	623, 741
Bst2UI	CCWGG	1 cut(s)	504
Bst6I	CTCTTC	2 cut(s)	216, 768
BstBAI	YACGTR	1 cut(s)	1478
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	5 cut(s)	256, 282, 1294, 1320, 1456
BstDSI	CCRYGG	1 cut(s)	741
BstEII	GGTNACC	2 cut(s)	55, 244
BstF5I	GGATG	8 cut(s)	329, 651, 681, 730, 886, 911, 1291, 1368
BstHHI	GCGC	1 cut(s)	126
BstMAI	GTCTC	3 cut(s)	464, 522, 727
BstMCI	CGRYCG	1 cut(s)	1396
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 132, 161, 182, 278, 545
BstNI	CCWGG	1 cut(s)	504
BstPI	GGTNACC	2 cut(s)	55, 244
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	2 cut(s)	758, 1005
BstSLI	GKGCMC	1 cut(s)	1242
BstSNI	TACGTA	1 cut(s)	1478
BstV1I	GCAGC	5 cut(s)	28, 144, 318, 560, 957
BstX2I	RGATCY	6 cut(s)	934, 1290, 1426, 1452, 1459, 1493
BstYI	RGATCY	6 cut(s)	934, 1290, 1426, 1452, 1459, 1493
BstZI	CGGCCG	1 cut(s)	1393
Bsu15I	ATCGAT	1 cut(s)	1311
Bsu36I	CCTNAGG	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	518, 750, 1395
BsuTUI	ATCGAT	1 cut(s)	1311
BtgI	CCRYGG	1 cut(s)	741
BtsCI	GGATG	8 cut(s)	329, 651, 681, 730, 886, 911, 1291, 1368
BtsI	GCAGTG	1 cut(s)	1081
BtsIMutI	CAGTG	1 cut(s)	1081
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	162
CaiI	CAGNNNCTG	3 cut(s)	41, 821, 938
CciI	TCATGA	2 cut(s)	997, 1434
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	2 cut(s)	514, 1391
Cfr13I	GGNCC	1 cut(s)	517
ClaI	ATCGAT	1 cut(s)	1311
CseI	GACGC	1 cut(s)	539
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	5 cut(s)	778, 839, 1377, 1389, 1526
CviAII	CATG	8 cut(s)	144, 395, 742, 796, 998, 1349, 1414, 1435
CviQI	GTAC	5 cut(s)	778, 839, 1377, 1389, 1526
DdeI	CTNAG	5 cut(s)	256, 282, 1294, 1320, 1456
DraI	TTTAAA	1 cut(s)	561
DraIII	CACNNNGTG	1 cut(s)	1351
EaeI	YGGCCR	1 cut(s)	1393
EagI	CGGCCG	1 cut(s)	1393
Eam1104I	CTCTTC	2 cut(s)	216, 768
EarI	CTCTTC	2 cut(s)	216, 768
EclXI	CGGCCG	1 cut(s)	1393
Eco105I	TACGTA	1 cut(s)	1478
Eco130I	CCWWGG	2 cut(s)	623, 741
Eco24I	GRGCYC	1 cut(s)	916
Eco52I	CGGCCG	1 cut(s)	1393
Eco81I	CCTNAGG	1 cut(s)	256
Eco91I	GGTNACC	2 cut(s)	55, 244
EcoO65I	GGTNACC	2 cut(s)	55, 244
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	623, 741
EcoT38I	GRGCYC	1 cut(s)	916
ErhI	CCWWGG	2 cut(s)	623, 741
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	8 cut(s)	147, 398, 745, 799, 1001, 1352, 1417, 1438
FaqI	GGGAC	2 cut(s)	1076, 1484
FatI	CATG	8 cut(s)	143, 394, 741, 795, 997, 1348, 1413, 1434
FbaI	TGATCA	1 cut(s)	994
Fnu4HI	GCNGC	5 cut(s)	42, 133, 307, 549, 946
FokI	GGATG	8 cut(s)	336, 658, 668, 737, 893, 918, 1298, 1375
FriOI	GRGCYC	1 cut(s)	916
Fsp4HI	GCNGC	5 cut(s)	42, 133, 307, 549, 946
FspBI	CTAG	6 cut(s)	161, 171, 198, 783, 1383, 1546
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	5 cut(s)	42, 133, 307, 549, 946
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	518, 750, 1395
HapII	CCGG	4 cut(s)	515, 1392, 1396, 1430
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	8 cut(s)	147, 398, 745, 799, 1001, 1352, 1417, 1438
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	5 cut(s)	356, 735, 818, 1001, 1336
HpaII	CCGG	4 cut(s)	515, 1392, 1396, 1430
HphI	GGTGA	5 cut(s)	238, 730, 1004, 1034, 1214
Hpy166II	GTNNAC	2 cut(s)	612, 1144
Hpy188I	TCNGA	9 cut(s)	37, 230, 299, 353, 934, 1297, 1321, 1459, 1493
Hpy188III	TCNNGA	6 cut(s)	409, 567, 604, 938, 998, 1435
Hpy8I	GTNNAC	2 cut(s)	612, 1144
HpyAV	CCTTC	5 cut(s)	100, 175, 377, 1011, 1193
HpyCH4IV	ACGT	1 cut(s)	1477
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 132, 161, 182, 278, 545
HpyF3I	CTNAG	5 cut(s)	256, 282, 1294, 1320, 1456
HpySE526I	ACGT	1 cut(s)	1477
Hsp92II	CATG	8 cut(s)	147, 398, 745, 799, 1001, 1352, 1417, 1438
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	994
LmnI	GCTCC	3 cut(s)	87, 396, 538
Lsp1109I	GCAGC	5 cut(s)	28, 144, 318, 560, 957
LweI	GCATC	6 cut(s)	111, 194, 802, 871, 1116, 1174
MabI	ACCWGGT	1 cut(s)	502
MaeI	CTAG	6 cut(s)	161, 171, 198, 783, 1383, 1546
MaeII	ACGT	1 cut(s)	1477
MaeIII	GTNAC	4 cut(s)	23, 55, 244, 1162
MboII	GAAGA	6 cut(s)	233, 340, 785, 1127, 1163, 1436
MfeI	CAATTG	3 cut(s)	581, 847, 868
MflI	RGATCY	6 cut(s)	934, 1290, 1426, 1452, 1459, 1493
MhlI	GDGCHC	3 cut(s)	916, 1029, 1242
MluCI	AATT	9 cut(s)	264, 540, 562, 572, 581, 786, 847, 868, 1486
MlyI	GAGTC	2 cut(s)	729, 827
MmeI	TCCRAC	1 cut(s)	413
MseI	TTAA	3 cut(s)	15, 477, 560
MslI	CAYNNNNRTG	2 cut(s)	1418, 1520
MspI	CCGG	4 cut(s)	515, 1392, 1396, 1430
MspR9I	CCNGG	1 cut(s)	504
MunI	CAATTG	3 cut(s)	581, 847, 868
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	6 cut(s)	87, 132, 161, 182, 278, 545
NcoI	CCATGG	1 cut(s)	741
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	8 cut(s)	147, 398, 745, 799, 1001, 1352, 1417, 1438
NlaIV	GGNNCC	1 cut(s)	1239
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	244, 1162
NsbI	TGCGCA	1 cut(s)	125
OliI	CACNNNNGTG	1 cut(s)	1520
PagI	TCATGA	2 cut(s)	997, 1434
PaqCI	CACCTGC	1 cut(s)	257
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	356, 1001, 1336
PkrI	GCNGC	5 cut(s)	43, 134, 308, 550, 947
PleI	GAGTC	2 cut(s)	729, 826
PpsI	GAGTC	2 cut(s)	729, 826
Ppu21I	YACGTR	1 cut(s)	1478
Psp6I	CCWGG	1 cut(s)	502
PspEI	GGTNACC	2 cut(s)	55, 244
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	1239
PspPI	GGNCC	1 cut(s)	517
PstI	CTGCAG	2 cut(s)	762, 1009
PstNI	CAGNNNCTG	3 cut(s)	41, 821, 938
PsuI	RGATCY	6 cut(s)	934, 1290, 1426, 1452, 1459, 1493
RsaI	GTAC	5 cut(s)	779, 840, 1378, 1390, 1527
RsaNI	GTAC	5 cut(s)	778, 839, 1377, 1389, 1526
RseI	CAYNNNNRTG	2 cut(s)	1418, 1520
SaqAI	TTAA	3 cut(s)	15, 477, 560
SatI	GCNGC	5 cut(s)	42, 133, 307, 549, 946
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	2 cut(s)	729, 827
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	3 cut(s)	916, 1029, 1242
SexAI	ACCWGGT	1 cut(s)	502
SfaNI	GCATC	6 cut(s)	111, 194, 802, 871, 1116, 1174
SfcI	CTRYAG	2 cut(s)	758, 1005
SmiMI	CAYNNNNRTG	2 cut(s)	1418, 1520
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SnaBI	TACGTA	1 cut(s)	1478
Sse9I	AATT	9 cut(s)	264, 540, 562, 572, 581, 786, 847, 868, 1486
SsiI	CCGC	3 cut(s)	60, 149, 191
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	6 cut(s)	161, 171, 198, 783, 1383, 1546
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	2 cut(s)	623, 741
TaiI	ACGT	1 cut(s)	1480
TaqI	TCGA	5 cut(s)	8, 344, 666, 1110, 1311
TasI	AATT	9 cut(s)	264, 540, 562, 572, 581, 786, 847, 868, 1486
TfiI	GAWTC	3 cut(s)	356, 1001, 1336
Tru1I	TTAA	3 cut(s)	15, 477, 560
Tru9I	TTAA	3 cut(s)	15, 477, 560
TscAI	CASTG	1 cut(s)	1081
TseFI	GTSAC	2 cut(s)	244, 1162
TseI	GCWGC	5 cut(s)	41, 132, 306, 548, 945
Tsp45I	GTSAC	2 cut(s)	244, 1162
TspDTI	ATGAA	8 cut(s)	283, 780, 970, 975, 1163, 1164, 1241, 1402
TspRI	CASTG	1 cut(s)	1081
XapI	RAATTY	4 cut(s)	264, 562, 572, 1486
XspI	CTAG	6 cut(s)	161, 171, 198, 783, 1383, 1546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.