Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012585

Physical Location & Seq

Genomic Coordinates Reverse (-)

28606323 .. 28607307

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCCGGTTTGTAGTAAATCCTGGCGCCGTTTGTTTTCGGACCAACGGTTTAACAAAGACTTGTTTTCGCAAAAACCAGCCTATCTTTTGGTCACTGAATCAGGGATCCCTTTATCAAACCCAACAAATCGTCAGTTATTGGTGGACTGGGACAATGCCTCGAGCCCAGGAGATGCTGCATTGAAGGTTTCTGAGGAACTAACTCTTGGCCGGAGATTTGTGGGTGTATGTAATGGCTTGCTTTGTCATTACATGGATGTCGATATGAGACTTGTCAATTTTTACATATCCAATCCGATTACTAGTGAGTCTGTGCCTCTTTCGTGTCCTCATGAGGAAACTAGCTTTGACAATATTGGAACTGGGTTTGGGTTTGGGTACAGTCCTAAGAGTCAGGTATTTAAGGTAGTAGTTCTTCTGTCGTTTGCTCGGAAGGTGATGGTTTTGACGGTTGGCTCTGGGTTGGAGGAGCATTTCGTACCCTGGCTACTATTAGAAATTATTGGTGGTGTTATAAAACATACTACTTATTCTCCTGCTCGTGTTTTAGAATACACAAAGGAGAGGCAAGTCCTGGTGTTGAAAGGTAAGTTGCAGAGTTATGCTCCAAAAGATGGCTTTATGATGAGTGAGTTTGATGGAATACCATATATTCATGATGCGGAATATGTCCGTATTCAAGGCTTTGTTCTGCTCAAAGATCTCATCAGGGGTTCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

241

Amino Acids

26.97

Weight (kDa)

6.96

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40010
rosa_chinensis	RchiOBHm_Chr4g0409251 RchiOBHm_Chr6g0300741
rosa_laevigata	RLG00000008583 RLG00000011306
rosa_multiflora	Rmu_sc0001569.1_g000004 Rmu_sc0006723.1_g000005 Rmu_sc0032596.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353720 Rroxscaffold_7G00167460
rosa_rugosa	Rorug04G0091500 Rorug04G0091500
rosa_samantha	Rh4AG154900 Rh4BG152500 Rh4BG175800 Rh4CG163900 Rh4DG147700 Rh6AG411600
rosa_wichuraiana	Rw4G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	24
AccB7I	CCANNNNNTGG	1 cut(s)	614
AciI	CCGC	1 cut(s)	662
AclWI	GGATC	2 cut(s)	100, 113
AcoI	YGGCCR	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	25
AfaI	GTAC	2 cut(s)	380, 480
AfiI	CCNNNNNNNGG	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	184, 583, 680
AhlI	ACTAGT	1 cut(s)	302
AjnI	CCWGG	4 cut(s)	20, 166, 482, 573
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	2 cut(s)	345, 720
AluI	AGCT	2 cut(s)	345, 720
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	2 cut(s)	100, 113
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	167
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BauI	CACGAG	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	3 cut(s)	433, 608, 632
BceAI	ACGGC	1 cut(s)	12
BciT130I	CCWGG	4 cut(s)	22, 168, 484, 575
BcoDI	GTCTC	1 cut(s)	262
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	3 cut(s)	303, 342, 717
BfoI	RGCGCY	1 cut(s)	28
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	4 cut(s)	22, 168, 484, 575
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	26, 107
BmrFI	CCNGG	4 cut(s)	22, 168, 484, 575
BmrI	ACTGGG	2 cut(s)	157, 372
BmsI	GCATC	2 cut(s)	163, 649
BmuI	ACTGGG	2 cut(s)	157, 372
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
BsaHI	GRCGYC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	166, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	152, 367
BseBI	CCWGG	4 cut(s)	22, 168, 484, 575
BseDI	CCNNGG	2 cut(s)	166, 482
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	152, 367
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	5, 211
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	105, 700
BspACI	CCGC	1 cut(s)	662
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	2 cut(s)	331, 655
BspLI	GGNNCC	2 cut(s)	26, 107
BspPI	GGATC	2 cut(s)	100, 113
BspT107I	GGYRCC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	152, 367
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	166, 482
BssMI	GATC	2 cut(s)	105, 700
BssNI	GRCGYC	1 cut(s)	25
BssSI	CACGAG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	4 cut(s)	22, 168, 484, 575
Bst4CI	ACNGT	3 cut(s)	48, 383, 451
BstACI	GRCGYC	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	192, 387
BstF5I	GGATG	1 cut(s)	262
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	2 cut(s)	108, 703
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	2 cut(s)	105, 700
BstNI	CCWGG	4 cut(s)	22, 168, 484, 575
BstSCI	CCNGG	4 cut(s)	20, 166, 482, 573
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	105, 700
BstYI	RGATCY	2 cut(s)	105, 700
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	239
CciI	TCATGA	2 cut(s)	331, 655
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	379, 479
CviAII	CATG	3 cut(s)	253, 332, 656
CviQI	GTAC	2 cut(s)	379, 479
DdeI	CTNAG	2 cut(s)	192, 387
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	2 cut(s)	107, 702
DpnII	GATC	2 cut(s)	105, 700
EaeI	YGGCCR	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	160
EcoRII	CCWGG	4 cut(s)	20, 166, 482, 573
EcoT38I	GRGCYC	1 cut(s)	167
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
FaeI	CATG	3 cut(s)	256, 335, 659
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	252, 331, 655
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	3 cut(s)	303, 342, 717
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	5, 211
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	3 cut(s)	256, 335, 659
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	98, 308, 391
HpaII	CCGG	2 cut(s)	5, 211
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	4 cut(s)	40, 193, 297, 432
Hpy188III	TCNNGA	2 cut(s)	332, 656
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	178, 427
HpyCH4III	ACNGT	3 cut(s)	48, 383, 451
HpyCH4V	TGCA	2 cut(s)	179, 595
HpyF3I	CTNAG	2 cut(s)	192, 387
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	256, 335, 659
HspAI	GCGC	1 cut(s)	25
KasI	GGCGCC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	105, 700
LmnI	GCTCC	2 cut(s)	469, 610
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	2 cut(s)	163, 649
MaeI	CTAG	3 cut(s)	303, 342, 717
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	107, 702
MboI	GATC	2 cut(s)	105, 700
MboII	GAAGA	1 cut(s)	407
MflI	RGATCY	2 cut(s)	105, 700
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	2 cut(s)	277, 498
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	2 cut(s)	317, 400
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	7 cut(s)	169, 187, 327, 328, 339, 460, 558
MseI	TTAA	2 cut(s)	51, 402
MspI	CCGG	2 cut(s)	5, 211
MspR9I	CCNGG	4 cut(s)	22, 168, 484, 575
MvaI	CCWGG	4 cut(s)	22, 168, 484, 575
NarI	GGCGCC	1 cut(s)	25
NdeII	GATC	2 cut(s)	105, 700
NlaIII	CATG	3 cut(s)	256, 335, 659
NlaIV	GGNNCC	2 cut(s)	26, 107
NmuCI	GTSAC	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	160
PagI	TCATGA	2 cut(s)	331, 655
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	2 cut(s)	316, 399
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	2 cut(s)	316, 399
PsiI	TTATAA	1 cut(s)	515
Psp6I	CCWGG	4 cut(s)	20, 166, 482, 573
PspGI	CCWGG	4 cut(s)	20, 166, 482, 573
PspN4I	GGNNCC	2 cut(s)	26, 107
PspPI	GGNCC	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	105, 700
RsaI	GTAC	2 cut(s)	380, 480
RsaNI	GTAC	2 cut(s)	379, 479
SaqAI	TTAA	2 cut(s)	51, 402
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	105, 700
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	317, 400
ScrFI	CCNGG	4 cut(s)	22, 168, 484, 575
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	7 cut(s)	189, 347, 399, 408, 438, 589, 722
SfaNI	GCATC	2 cut(s)	163, 649
SfoI	GGCGCC	1 cut(s)	26
Sfr274I	CTCGAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	2 cut(s)	277, 498
SsiI	CCGC	1 cut(s)	662
SspDI	GGCGCC	1 cut(s)	24
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	3 cut(s)	303, 342, 717
StyD4I	CCNGG	4 cut(s)	20, 166, 482, 573
TaaI	ACNGT	3 cut(s)	48, 383, 451
TaqI	TCGA	2 cut(s)	161, 261
TasI	AATT	2 cut(s)	277, 498
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	51, 402
Tru9I	TTAA	2 cut(s)	51, 402
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	644
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	160
XspI	CTAG	3 cut(s)	303, 342, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.