Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0012585

Physical Location & Seq

Genomic Coordinates Forward (+)

39439355 .. 39444515

Gene Structure 5161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG154900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGAAGAATACCGAGCTATGCCATAGCCGCCGACCTCAGAAGCAACATGAGAAGGAAGACGACGATGATCAGAAACCCTACCTTGTACAATTGCCAGACCATATAATTGCCGATATCTCCTGCAAAATCCCAATCAAGACCCTCATGAAATGCAGGCATGTCTGCAAATCTTTGCGATCTTTGTTCGCAGACCCGCAATTTACCGAAGAACTATTCTCTCGAACACGCCCTTGCCATTTGGTGTCGAGCCTCAATTCGGATAGGTACTTCTTGGTCGACTTCAACGAGCGGAGGCCAAACGGCGTCGCAGCACTGGATCTTTCTATAGACTCAGCGACTCCTAGCAGCGCAATCATGGTGGGATCTTGCAAGGGCTTGGTCTGCTTATACAAGATGTACTGCCCTTACGGTTTTTACATATGCAATCCAATGACTGGTGAGTCTTCATCTCTTCCACCTCCTATTAGGGAAGTTGATTCCAGTTTCCTTTATTGGCCTTTATCTCTAGAGGAGGAGTTAACTCCTGTAGAGTCCACTCCTACAAGACACAGTGAGGAAATTTTGGAGCCATCTTTTTGTGGATTTGGGTTGGGATATAGTACCATAAATGGTGTCTACAAAATTGTTCTTATTACTTATTCAAGAAAAATGAGGATGGGGATTCGGCCTCCAGGTGAGATTGCGTATGGACCTCGGGAGGTGATGGTTTTGACTGTGGACTCAGGGGGTTGGAGACTTGTTGGGGAATTTGATATGAACAATTTTGATCATGTACATGGAGTTTATATTCATGACTGTCTTCATTGGACTGGCCTTCCGGTAAAGGGTCCTCGTTTGATATATGCATTTGATGTTGGAAGTGAGTGTTTCCGAGAGCTACCAGTACCTCGTTGGACTTCTTTGGAGAGCCAAATGACTAGATTCAACCTTGGAATCTTGAATGATTGCCTCTCTATAACTGTTTGTTGGAGAGCTAGTATCCATGTTTGGGTGATGAAGCATTACGGTGTCGAGGACTCTTGGACCAAAGAGCTTGACATTAGTGTGGAATATGGTCCATCGTCGTTTGGTGGTTACGCACAAATTTTGAGTTTTTCACCAGAATGGCAAGTCCTGTTGTGGCAGGGTAGGTTGCAGGCTCATACTGCTGGAAGTGAGGGCTTTGTTGGGGTTCAGGTTGATGGGATACCATCTTCGGTTGACAAAGCCTATCCCCATTTTCCAAGCTTTATTTCACTTAAAGATGTTATCAGGTGTCAGAACCCTGAGGGGCAAGGAAATGTGCAAACCACTGCAGTAGATCATGGGAATGCTAAGGAAGATAAACAGAATTTGCAATCTAATGCTCATGGATTAAATCAAGGGAATGTGCAATCTGTAACTGTACCAGTCGATCAACAGCAACAGGGCCAACTGAATGTGCAATCCAATGCAGCAGATCATGGGAATGCTGAAGCAGATAAAGGGAATGTGCAATCTAATGCTGATCAATTAGATCAAGGGAATTTGCAATCTATAGCTTTAACAATTACCCAAGAAAGACAGGAGAATAGAGCACCCAAGAAGGCAAAAACCACACATGAAGTTCAACCAATGCAAGCCTCTGCATCCCAACCATTTTATGCATCACCACCCAAGCCAACACAGCCATCTGTTGTGCAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

555

Amino Acids

62.02

Weight (kDa)

5.78

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	30 - 68	1.1e-06	F-box domain
FBA_3	PF08268	113 - 344	4.4e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40010
rosa_chinensis	RchiOBHm_Chr4g0409251 RchiOBHm_Chr6g0300741
rosa_laevigata	RLG00000008583 RLG00000011306
rosa_multiflora	Rmu_sc0001569.1_g000004 Rmu_sc0006723.1_g000005 Rmu_sc0032596.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353720 Rroxscaffold_7G00167460
rosa_rugosa	Rorug04G0091500 Rorug04G0091500
rosa_samantha	Rh4AG154900 Rh4BG152500 Rh4BG175800 Rh4CG163900 Rh4DG147700 Rh6AG411600
rosa_wichuraiana	Rw4G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	439
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	289
AccI	GTMKAC	2 cut(s)	276, 615
AciI	CCGC	3 cut(s)	28, 194, 289
AclWI	GGATC	2 cut(s)	324, 370
AcsI	RAATTY	5 cut(s)	558, 746, 1083, 1330, 1504
AcuI	CTGAAG	1 cut(s)	1473
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	7 cut(s)	87, 266, 398, 601, 774, 885, 1386
AfiI	CCNNNNNNNGG	4 cut(s)	256, 434, 824, 988
AgsI	TTSAA	5 cut(s)	283, 642, 925, 940, 1589
AjnI	CCWGG	1 cut(s)	670
AjuI	GAANNNNNNNTTGG	2 cut(s)	1216, 1248
AluBI	AGCT	7 cut(s)	16, 877, 974, 1033, 1227, 1520, 1663
AluI	AGCT	7 cut(s)	16, 877, 974, 1033, 1227, 1520, 1663
Alw21I	GWGCWC	1 cut(s)	1558
Alw26I	GTCTC	1 cut(s)	727
AlwI	GGATC	2 cut(s)	324, 370
Ama87I	CYCGRG	1 cut(s)	693
AoxI	GGCC	5 cut(s)	293, 494, 665, 811, 1408
ApeKI	GCWGC	4 cut(s)	308, 345, 1433, 1660
ApoI	RAATTY	5 cut(s)	558, 746, 1083, 1330, 1504
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	5 cut(s)	689, 827, 1023, 1055, 1408
AsuHPI	GGTGA	6 cut(s)	449, 686, 712, 1003, 1089, 1620
AvaI	CYCGRG	1 cut(s)	693
AvaII	GGWCC	4 cut(s)	689, 827, 1023, 1055
AxyI	CCTNAGG	1 cut(s)	1266
BbsI	GAAGAC	3 cut(s)	63, 435, 791
Bbv12I	GWGCWC	1 cut(s)	1558
BbvI	GCAGC	3 cut(s)	320, 357, 1445
BccI	CCATC	7 cut(s)	577, 649, 697, 1066, 1175, 1198, 1657
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	672
BciVI	GTATCC	2 cut(s)	989, 1179
BclI	TGATCA	3 cut(s)	67, 766, 1486
BcoDI	GTCTC	1 cut(s)	727
BfaI	CTAG	4 cut(s)	342, 506, 918, 975
BfmI	CTRYAG	4 cut(s)	324, 525, 1293, 1515
BfuI	GTATCC	2 cut(s)	989, 1179
BisI	GCNGC	5 cut(s)	28, 309, 346, 1434, 1661
BlsI	GCNGC	5 cut(s)	29, 310, 347, 1435, 1662
Bme1390I	CCNGG	1 cut(s)	672
Bme18I	GGWCC	4 cut(s)	689, 827, 1023, 1055
BmeT110I	CYCGRG	1 cut(s)	693
BmgT120I	GGNCC	5 cut(s)	689, 827, 1023, 1055, 1408
BmiI	GGNNCC	2 cut(s)	567, 828
BmrFI	CCNGG	1 cut(s)	672
BmsI	GCATC	2 cut(s)	1616, 1634
BpiI	GAAGAC	3 cut(s)	63, 435, 791
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	1 cut(s)	1314
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	692, 928
BsaWI	WCCGGW	1 cut(s)	817
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 434, 824, 988
Bse1I	ACTGG	6 cut(s)	318, 439, 480, 814, 881, 1388
Bse21I	CCTNAGG	1 cut(s)	1266
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	2 cut(s)	692, 928
BseGI	GGATG	2 cut(s)	660, 1607
BseLI	CCNNNNNNNGG	4 cut(s)	256, 434, 824, 988
BseMII	CTCAG	4 cut(s)	50, 345, 735, 1257
BseNI	ACTGG	6 cut(s)	318, 439, 480, 814, 881, 1388
BseRI	GAGGAG	2 cut(s)	524, 527
BseXI	GCAGC	3 cut(s)	320, 357, 1445
BshFI	GGCC	5 cut(s)	295, 496, 667, 813, 1410
BsiHKAI	GWGCWC	1 cut(s)	1558
BsiHKCI	CYCGRG	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	818
BslI	CCNNNNNNNGG	4 cut(s)	256, 434, 824, 988
BsmAI	GTCTC	1 cut(s)	727
BsmI	GAATGC	2 cut(s)	1315, 1453
BsnI	GGCC	5 cut(s)	295, 496, 667, 813, 1410
BsoBI	CYCGRG	1 cut(s)	693
Bsp1286I	GDGCHC	1 cut(s)	1558
Bsp1407I	TGTACA	2 cut(s)	85, 772
BspACI	CCGC	3 cut(s)	28, 194, 289
BspANI	GGCC	5 cut(s)	295, 496, 667, 813, 1410
BspCNI	CTCAG	4 cut(s)	49, 344, 734, 1258
BspHI	TCATGA	2 cut(s)	144, 790
BspLI	GGNNCC	2 cut(s)	567, 828
BspMAI	CTGCAG	1 cut(s)	1297
BspPI	GGATC	2 cut(s)	324, 370
BsrBI	CCGCTC	1 cut(s)	289
BsrGI	TGTACA	2 cut(s)	85, 772
BsrI	ACTGG	6 cut(s)	318, 439, 480, 814, 881, 1388
BssECI	CCNNGG	2 cut(s)	692, 928
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	928
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	7 cut(s)	410, 551, 715, 797, 961, 1007, 1384
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	1 cut(s)	303
BstAUI	TGTACA	2 cut(s)	85, 772
BstC8I	GCNNGC	3 cut(s)	155, 1137, 1599
BstDEI	CTNAG	5 cut(s)	36, 331, 721, 1266, 1314
BstF5I	GGATG	2 cut(s)	660, 1607
BstHHI	GCGC	1 cut(s)	350
BstMAI	GTCTC	1 cut(s)	727
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 381, 1145, 1645
BstNI	CCWGG	1 cut(s)	672
BstNSI	RCATGY	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	670
BstSFI	CTRYAG	4 cut(s)	324, 525, 1293, 1515
BstV1I	GCAGC	3 cut(s)	320, 357, 1445
BstV2I	GAAGAC	3 cut(s)	63, 435, 791
BstX2I	RGATCY	2 cut(s)	316, 362
BstYI	RGATCY	2 cut(s)	316, 362
Bsu36I	CCTNAGG	1 cut(s)	1266
BsuI	GTATCC	2 cut(s)	989, 1179
BsuRI	GGCC	5 cut(s)	295, 496, 667, 813, 1410
BtsCI	GGATG	2 cut(s)	660, 1607
BtsI	GCAGTG	1 cut(s)	1290
BtsIMutI	CAGTG	3 cut(s)	311, 556, 1290
Cac8I	GCNNGC	3 cut(s)	155, 1137, 1599
CciI	TCATGA	2 cut(s)	144, 790
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	5 cut(s)	689, 827, 1023, 1055, 1408
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	7 cut(s)	86, 265, 397, 600, 773, 884, 1385
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviQI	GTAC	7 cut(s)	86, 265, 397, 600, 773, 884, 1385
DdeI	CTNAG	5 cut(s)	36, 331, 721, 1266, 1314
DrdI	GACNNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	928
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	4 cut(s)	689, 827, 1023, 1055
Eco57I	CTGAAG	1 cut(s)	1473
Eco81I	CCTNAGG	1 cut(s)	1266
Eco88I	CYCGRG	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	670
EcoRV	GATATC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	928
EcoT22I	ATGCAT	2 cut(s)	847, 1627
ErhI	CCWWGG	1 cut(s)	928
FauI	CCCGC	1 cut(s)	201
FauNDI	CATATG	1 cut(s)	419
FbaI	TGATCA	3 cut(s)	67, 766, 1486
FblI	GTMKAC	2 cut(s)	276, 615
Fnu4HI	GCNGC	5 cut(s)	28, 309, 346, 1434, 1661
FokI	GGATG	2 cut(s)	667, 1594
Fsp4HI	GCNGC	5 cut(s)	28, 309, 346, 1434, 1661
FspBI	CTAG	4 cut(s)	342, 506, 918, 975
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	5 cut(s)	28, 309, 346, 1434, 1661
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	5 cut(s)	295, 496, 667, 813, 1410
HapII	CCGG	1 cut(s)	818
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	3 cut(s)	277, 519, 1201
HindII	GTYRAC	3 cut(s)	277, 519, 1201
HindIII	AAGCTT	1 cut(s)	1225
HpaI	GTTAAC	1 cut(s)	519
HpaII	CCGG	1 cut(s)	818
HphI	GGTGA	6 cut(s)	449, 686, 712, 1003, 1089, 1620
Hpy166II	GTNNAC	6 cut(s)	277, 519, 534, 616, 718, 1201
Hpy188I	TCNGA	5 cut(s)	39, 72, 259, 872, 1260
Hpy188III	TCNNGA	8 cut(s)	136, 145, 219, 506, 642, 695, 791, 937
Hpy8I	GTNNAC	6 cut(s)	277, 519, 534, 616, 718, 1201
Hpy99I	CGWCG	3 cut(s)	65, 308, 1066
HpyAV	CCTTC	3 cut(s)	46, 824, 1558
HpyCH4III	ACNGT	7 cut(s)	410, 551, 715, 797, 961, 1007, 1384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 381, 1145, 1645
HpyF3I	CTNAG	5 cut(s)	36, 331, 721, 1266, 1314
Hsp92I	GRCGYC	1 cut(s)	303
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	3 cut(s)	67, 766, 1486
KspAI	GTTAAC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	3 cut(s)	320, 357, 1445
LweI	GCATC	2 cut(s)	1616, 1634
MaeI	CTAG	4 cut(s)	342, 506, 918, 975
MaeIII	GTNAC	2 cut(s)	1073, 1378
MbiI	CCGCTC	1 cut(s)	289
MboII	GAAGA	8 cut(s)	16, 68, 218, 435, 443, 791, 1185, 1331
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	2 cut(s)	316, 362
MhlI	GDGCHC	1 cut(s)	1558
MlyI	GAGTC	6 cut(s)	323, 331, 449, 539, 713, 1010
MmeI	TCCRAC	4 cut(s)	710, 835, 872, 947
Mph1103I	ATGCAT	2 cut(s)	847, 1627
MseI	TTAA	4 cut(s)	518, 1239, 1355, 1523
MslI	CAYNNNNRTG	6 cut(s)	774, 1005, 1043, 1102, 1308, 1446
MspI	CCGG	1 cut(s)	818
MspR9I	CCNGG	1 cut(s)	672
MunI	CAATTG	1 cut(s)	89
Mva1269I	GAATGC	2 cut(s)	1315, 1453
MvaI	CCWGG	1 cut(s)	672
MwoI	GCNNNNNNNGC	4 cut(s)	27, 381, 1145, 1645
NdeI	CATATG	1 cut(s)	419
NlaIV	GGNNCC	2 cut(s)	567, 828
NsiI	ATGCAT	2 cut(s)	847, 1627
NspI	RCATGY	1 cut(s)	161
PagI	TCATGA	2 cut(s)	144, 790
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PctI	GAATGC	2 cut(s)	1315, 1453
PfeI	GAWTC	4 cut(s)	476, 661, 921, 933
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	5 cut(s)	29, 310, 347, 1435, 1662
PleI	GAGTC	6 cut(s)	323, 331, 448, 538, 713, 1010
PpsI	GAGTC	6 cut(s)	323, 331, 448, 538, 713, 1010
PpuMI	RGGWCCY	1 cut(s)	827
Psp5II	RGGWCCY	1 cut(s)	827
Psp6I	CCWGG	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	2 cut(s)	567, 828
PspPI	GGNCC	5 cut(s)	689, 827, 1023, 1055, 1408
PspPPI	RGGWCCY	1 cut(s)	827
PstI	CTGCAG	1 cut(s)	1297
PsuI	RGATCY	2 cut(s)	316, 362
RsaI	GTAC	7 cut(s)	87, 266, 398, 601, 774, 885, 1386
RsaNI	GTAC	7 cut(s)	86, 265, 397, 600, 773, 884, 1385
RseI	CAYNNNNRTG	6 cut(s)	774, 1005, 1043, 1102, 1308, 1446
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	4 cut(s)	518, 1239, 1355, 1523
SatI	GCNGC	5 cut(s)	28, 309, 346, 1434, 1661
Sau96I	GGNCC	5 cut(s)	689, 827, 1023, 1055, 1408
SchI	GAGTC	6 cut(s)	323, 331, 449, 539, 713, 1010
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	1 cut(s)	1558
SfaNI	GCATC	2 cut(s)	1616, 1634
SfcI	CTRYAG	4 cut(s)	324, 525, 1293, 1515
SinI	GGWCC	4 cut(s)	689, 827, 1023, 1055
SmiMI	CAYNNNNRTG	6 cut(s)	774, 1005, 1043, 1102, 1308, 1446
SsiI	CCGC	3 cut(s)	28, 194, 289
SspMI	CTAG	4 cut(s)	342, 506, 918, 975
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	928
TaaI	ACNGT	7 cut(s)	410, 551, 715, 797, 961, 1007, 1384
TaqI	TCGA	5 cut(s)	220, 245, 276, 1011, 1392
TatI	WGTACW	3 cut(s)	85, 396, 772
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	4 cut(s)	476, 661, 921, 933
Tru1I	TTAA	4 cut(s)	518, 1239, 1355, 1523
Tru9I	TTAA	4 cut(s)	518, 1239, 1355, 1523
TscAI	CASTG	3 cut(s)	318, 556, 1297
TseI	GCWGC	4 cut(s)	308, 345, 1433, 1660
TspDTI	ATGAA	8 cut(s)	17, 161, 435, 770, 779, 791, 1010, 1596
TspRI	CASTG	3 cut(s)	318, 556, 1297
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	4 cut(s)	689, 827, 1023, 1055
XapI	RAATTY	5 cut(s)	558, 746, 1083, 1330, 1504
XbaI	TCTAGA	1 cut(s)	505
XceI	RCATGY	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	888
XmiI	GTMKAC	2 cut(s)	276, 615
XspI	CTAG	4 cut(s)	342, 506, 918, 975
Zsp2I	ATGCAT	2 cut(s)	847, 1627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.