Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012585

Physical Location & Seq

Genomic Coordinates Forward (+)

31627596 .. 31632656

Gene Structure 5061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAACAATTTTGATCATGTACATGGAGTTTATATTCATGATTGTCTTCATTGGACTGGCCTGCCAGTAAAGGGTCCTCGTTTGATATATGCATTTGACGTTGGAAGGGAGTGTTTCCGAGAGCTACCAGTACCTTGTTGGACTTCTTCGGAGAGCCAAATGACTAGATTCAACCTTGGAATCTTGAATGGTTGCCTCTCTATAACTGTTTGTTGGAGAGCTAGTATCCATGTTTGGGTGATGAAGCATTACGGTGTCGAGGACTCTTGGACCAAAGAGCTTGACATTAGTGTGGAATATGGTCCGTCGTCGTTTGGTGGTTACGCACAAATTTTGAGTTTTTCACCAGAATGGCAGGTCCTGTTGTGGCAGGGTAGGTTGCAGGCTCATACTGCTGGAAGTGAGGGCTTTGTTGGGGTTCAGGTTGATGGGATACCATCTTCGGTTGACAAAGCCTATCCCCATGTTCCAAGCTTTATTTCACTTAAAGATGTTATCAGGTGTCAGAACCCTGAGGGGCAAGGAAATGTGCAAACCACTGCAGTAGATCATGGGAATGCTAAGGAAGATAAACAGAATTTGCAATCTAATTCTCATGGATTAAATCAAGGGAATGTGCAATCTGTAACTGTACCAGTCGATCACCAGCAACAGGGCCAACTGAATGTGCAATCCAATGCAGCAGATCATGGGAATGCTGAAGCAGATAAAGGGAATGTGCAATCTAATGCTGATCAATTAGATCAAGGGAATTTGCAATCTATAGCTGCAACAATTACCCAAGAAACACAGGAGAATAGAGCACCCAAGAAGGCGAAAACCACACATGAAGTTCAACCAATGCAAGCCTCTATATCCCAACCATTTTATGCATCACCACCCAAGCCAACACAGCCATCTGTTGTGCAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

304

Amino Acids

33.45

Weight (kDa)

5.76

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40010
rosa_chinensis	RchiOBHm_Chr4g0409251 RchiOBHm_Chr6g0300741
rosa_laevigata	RLG00000008583 RLG00000011306
rosa_multiflora	Rmu_sc0001569.1_g000004 Rmu_sc0006723.1_g000005 Rmu_sc0032596.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353720 Rroxscaffold_7G00167460
rosa_rugosa	Rorug04G0091500 Rorug04G0091500
rosa_samantha	Rh4AG154900 Rh4BG152500 Rh4BG175800 Rh4CG163900 Rh4DG147700 Rh6AG411600
rosa_wichuraiana	Rw4G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AcsI	RAATTY	3 cut(s)	330, 577, 751
AcuI	CTGAAG	1 cut(s)	720
AfaI	GTAC	3 cut(s)	21, 132, 633
AfiI	CCNNNNNNNGG	3 cut(s)	71, 235, 652
AgsI	TTSAA	3 cut(s)	172, 187, 836
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AluBI	AGCT	6 cut(s)	124, 221, 280, 474, 767, 910
AluI	AGCT	6 cut(s)	124, 221, 280, 474, 767, 910
Alw21I	GWGCWC	1 cut(s)	805
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	2 cut(s)	58, 655
ApeKI	GCWGC	3 cut(s)	680, 767, 907
ApoI	RAATTY	3 cut(s)	330, 577, 751
AspS9I	GGNCC	5 cut(s)	74, 270, 302, 358, 655
AsuHPI	GGTGA	4 cut(s)	250, 336, 635, 867
AvaII	GGWCC	4 cut(s)	74, 270, 302, 358
AxyI	CCTNAGG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	805
BbvI	GCAGC	2 cut(s)	692, 754
BccI	CCATC	3 cut(s)	422, 445, 904
BciVI	GTATCC	2 cut(s)	236, 426
BclI	TGATCA	2 cut(s)	13, 733
BfaI	CTAG	2 cut(s)	165, 222
BfmI	CTRYAG	2 cut(s)	540, 762
BfuAI	ACCTGC	1 cut(s)	346
BfuI	GTATCC	2 cut(s)	236, 426
BisI	GCNGC	3 cut(s)	681, 768, 908
BlsI	GCNGC	3 cut(s)	682, 769, 909
Bme18I	GGWCC	4 cut(s)	74, 270, 302, 358
BmgT120I	GGNCC	5 cut(s)	74, 270, 302, 358, 655
BmiI	GGNNCC	1 cut(s)	75
BmsI	GCATC	1 cut(s)	881
BpiI	GAAGAC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 235, 652
Bse1I	ACTGG	4 cut(s)	61, 65, 128, 635
Bse21I	CCTNAGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	175
BseLI	CCNNNNNNNGG	3 cut(s)	71, 235, 652
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	4 cut(s)	61, 65, 128, 635
BseXI	GCAGC	2 cut(s)	692, 754
BshFI	GGCC	2 cut(s)	60, 657
BsiHKAI	GWGCWC	1 cut(s)	805
BslI	CCNNNNNNNGG	3 cut(s)	71, 235, 652
BsmI	GAATGC	2 cut(s)	562, 700
BsnI	GGCC	2 cut(s)	60, 657
Bsp1286I	GDGCHC	1 cut(s)	805
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	6 cut(s)	13, 547, 640, 685, 733, 742
BspANI	GGCC	2 cut(s)	60, 657
BspCNI	CTCAG	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	346
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	4 cut(s)	61, 65, 128, 635
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	6 cut(s)	13, 547, 640, 685, 733, 742
BssT1I	CCWWGG	1 cut(s)	175
Bst4CI	ACNGT	3 cut(s)	208, 254, 631
BstAUI	TGTACA	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	62, 384, 846
BstDEI	CTNAG	2 cut(s)	513, 561
BstKTI	GATC	6 cut(s)	16, 550, 643, 688, 736, 745
BstMBI	GATC	6 cut(s)	13, 547, 640, 685, 733, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 892
BstSFI	CTRYAG	2 cut(s)	540, 762
BstV1I	GCAGC	2 cut(s)	692, 754
BstV2I	GAAGAC	1 cut(s)	38
Bsu36I	CCTNAGG	1 cut(s)	513
BsuI	GTATCC	2 cut(s)	236, 426
BsuRI	GGCC	2 cut(s)	60, 657
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	537
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	3 cut(s)	62, 384, 846
CaiI	CAGNNNCTG	1 cut(s)	361
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	5 cut(s)	74, 270, 302, 358, 655
Csp6I	GTAC	3 cut(s)	20, 131, 632
CviAII	CATG	9 cut(s)	17, 23, 38, 230, 464, 551, 596, 689, 827
CviQI	GTAC	3 cut(s)	20, 131, 632
DdeI	CTNAG	2 cut(s)	513, 561
DpnI	GATC	6 cut(s)	15, 549, 642, 687, 735, 744
DpnII	GATC	6 cut(s)	13, 547, 640, 685, 733, 742
Eco130I	CCWWGG	1 cut(s)	175
Eco47I	GGWCC	4 cut(s)	74, 270, 302, 358
Eco57I	CTGAAG	1 cut(s)	720
Eco81I	CCTNAGG	1 cut(s)	513
EcoO109I	RGGNCCY	2 cut(s)	74, 358
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	2 cut(s)	94, 874
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	9 cut(s)	20, 26, 41, 233, 467, 554, 599, 692, 830
FatI	CATG	9 cut(s)	16, 22, 37, 229, 463, 550, 595, 688, 826
FbaI	TGATCA	2 cut(s)	13, 733
Fnu4HI	GCNGC	3 cut(s)	681, 768, 908
Fsp4HI	GCNGC	3 cut(s)	681, 768, 908
FspBI	CTAG	2 cut(s)	165, 222
GluI	GCNGC	3 cut(s)	681, 768, 908
HaeIII	GGCC	2 cut(s)	60, 657
Hin1II	CATG	9 cut(s)	20, 26, 41, 233, 467, 554, 599, 692, 830
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	472
HinfI	GANTC	3 cut(s)	168, 180, 263
HphI	GGTGA	4 cut(s)	250, 336, 635, 867
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	3 cut(s)	119, 151, 507
Hpy188III	TCNNGA	2 cut(s)	38, 184
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	2 cut(s)	310, 313
HpyAV	CCTTC	2 cut(s)	99, 805
HpyCH4III	ACNGT	3 cut(s)	208, 254, 631
HpyCH4IV	ACGT	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 892
HpyF3I	CTNAG	2 cut(s)	513, 561
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	9 cut(s)	20, 26, 41, 233, 467, 554, 599, 692, 830
Ksp22I	TGATCA	2 cut(s)	13, 733
Kzo9I	GATC	6 cut(s)	13, 547, 640, 685, 733, 742
Lsp1109I	GCAGC	2 cut(s)	692, 754
LweI	GCATC	1 cut(s)	881
MaeI	CTAG	2 cut(s)	165, 222
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	320, 625
MalI	GATC	6 cut(s)	15, 549, 642, 687, 735, 744
MboI	GATC	6 cut(s)	13, 547, 640, 685, 733, 742
MboII	GAAGA	4 cut(s)	38, 138, 432, 578
MhlI	GDGCHC	1 cut(s)	805
MluCI	AATT	7 cut(s)	7, 330, 577, 589, 737, 751, 774
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	3 cut(s)	82, 119, 194
MnlI	CCTC	6 cut(s)	87, 206, 253, 397, 508, 859
Mph1103I	ATGCAT	2 cut(s)	94, 874
MseI	TTAA	2 cut(s)	486, 602
MslI	CAYNNNNRTG	6 cut(s)	21, 252, 290, 349, 555, 693
Mva1269I	GAATGC	2 cut(s)	562, 700
MwoI	GCNNNNNNNGC	2 cut(s)	392, 892
NdeII	GATC	6 cut(s)	13, 547, 640, 685, 733, 742
NlaIII	CATG	9 cut(s)	20, 26, 41, 233, 467, 554, 599, 692, 830
NlaIV	GGNNCC	1 cut(s)	75
NsiI	ATGCAT	2 cut(s)	94, 874
PagI	TCATGA	1 cut(s)	37
PctI	GAATGC	2 cut(s)	562, 700
PfeI	GAWTC	2 cut(s)	168, 180
PkrI	GCNGC	3 cut(s)	682, 769, 909
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PpuMI	RGGWCCY	2 cut(s)	74, 358
Psp5II	RGGWCCY	2 cut(s)	74, 358
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	5 cut(s)	74, 270, 302, 358, 655
PspPPI	RGGWCCY	2 cut(s)	74, 358
PstI	CTGCAG	1 cut(s)	544
PstNI	CAGNNNCTG	1 cut(s)	361
RsaI	GTAC	3 cut(s)	21, 132, 633
RsaNI	GTAC	3 cut(s)	20, 131, 632
RseI	CAYNNNNRTG	6 cut(s)	21, 252, 290, 349, 555, 693
SaqAI	TTAA	2 cut(s)	486, 602
SatI	GCNGC	3 cut(s)	681, 768, 908
Sau3AI	GATC	6 cut(s)	13, 547, 640, 685, 733, 742
Sau96I	GGNCC	5 cut(s)	74, 270, 302, 358, 655
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	805
SfaNI	GCATC	1 cut(s)	881
SfcI	CTRYAG	2 cut(s)	540, 762
SinI	GGWCC	4 cut(s)	74, 270, 302, 358
SmiMI	CAYNNNNRTG	6 cut(s)	21, 252, 290, 349, 555, 693
Sse9I	AATT	7 cut(s)	7, 330, 577, 589, 737, 751, 774
SspMI	CTAG	2 cut(s)	165, 222
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	208, 254, 631
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	258, 639
TasI	AATT	7 cut(s)	7, 330, 577, 589, 737, 751, 774
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	168, 180
Tru1I	TTAA	2 cut(s)	486, 602
Tru9I	TTAA	2 cut(s)	486, 602
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	3 cut(s)	680, 767, 907
TspDTI	ATGAA	5 cut(s)	17, 26, 38, 257, 843
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	4 cut(s)	74, 270, 302, 358
XapI	RAATTY	3 cut(s)	330, 577, 751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XspI	CTAG	2 cut(s)	165, 222
Zsp2I	ATGCAT	2 cut(s)	94, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.