Rmu_sc0001569.1_g000004

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001569.1
OG0012585
Physical Location & Seq
Forward (+)
2578 .. 2928
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001569.1_g000004.1.cds

Sequence Viewer

Length: 351 bp
atgaagacaaccgaactgaaccacggagacccgccagatagatcccgtaaccaaaatgaagacaaaaaacaaacagagcccgaaattgatcacaaatccaaccttcttgaattacctgatcacataacacttgacatcgtccacagaatcccaatgaagacgctgatgagatgcagctgtgtgtgcaatccttggtggtgtttgttctcagaccccaaattcaccaaagatctatttgctcgcacactcccttgccatttggtccatgtcaaaggttcagacaggtttttcttgcttgactccaataattattcgagcccaaactgcgtcgcagcactgaggcttccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

116

Amino Acids

13.44

Weight (kDa)

6.99

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 218
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 174, 332
ApoI RAATTY 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 262
BanII GRGCYC 2 cut(s) 81, 320
BbsI GAAGAC 3 cut(s) 11, 66, 164
BbvI GCAGC 2 cut(s) 186, 344
BclI TGATCA 2 cut(s) 88, 118
BcoDI GTCTC 1 cut(s) 21
BglII AGATCT 1 cut(s) 229
BisI GCNGC 2 cut(s) 175, 333
BlsI GCNGC 2 cut(s) 176, 334
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmsI GCATC 1 cut(s) 161
BpiI GAAGAC 3 cut(s) 11, 66, 164
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 22, 191
BseDI CCNNGG 2 cut(s) 22, 191
BseMII CTCAG 2 cut(s) 222, 329
BseXI GCAGC 2 cut(s) 186, 344
BsmAI GTCTC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 81, 320
Bsp143I GATC 4 cut(s) 41, 88, 118, 229
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 221, 330
BspPI GGATC 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 22, 191
BssMI GATC 4 cut(s) 41, 88, 118, 229
BssT1I CCWWGG 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 208, 338
BstDSI CCRYGG 1 cut(s) 22
BstKTI GATC 4 cut(s) 44, 91, 121, 232
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 4 cut(s) 41, 88, 118, 229
BstMWI GCNNNNNNNGC 2 cut(s) 183, 324
BstV1I GCAGC 2 cut(s) 186, 344
BstV2I GAAGAC 3 cut(s) 11, 66, 164
BstX2I RGATCY 2 cut(s) 41, 229
BstYI RGATCY 2 cut(s) 41, 229
BtgI CCRYGG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 2 cut(s) 169, 316
CviAII CATG 1 cut(s) 266
CviJI RGCY 4 cut(s) 79, 177, 318, 343
CviKI_1 RGCY 4 cut(s) 79, 177, 318, 343
DdeI CTNAG 2 cut(s) 208, 338
DpnI GATC 4 cut(s) 43, 90, 120, 231
DpnII GATC 4 cut(s) 41, 88, 118, 229
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 2 cut(s) 81, 320
Eco31I GGTCTC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 2 cut(s) 81, 320
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 269
FaiI YATR 2 cut(s) 125, 267
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 39
FbaI TGATCA 2 cut(s) 88, 118
Fnu4HI GCNGC 2 cut(s) 175, 333
FriOI GRGCYC 2 cut(s) 81, 320
Fsp4HI GCNGC 2 cut(s) 175, 333
GluI GCNGC 2 cut(s) 175, 333
HgaI GACGC 2 cut(s) 169, 316
Hin1II CATG 1 cut(s) 269
HinfI GANTC 2 cut(s) 147, 299
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 211, 280
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 174, 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 324
HpyF3I CTNAG 2 cut(s) 208, 338
Hsp92II CATG 1 cut(s) 269
Ksp22I TGATCA 2 cut(s) 88, 118
Kzo9I GATC 4 cut(s) 41, 88, 118, 229
LpnPI CCDG 3 cut(s) 48, 129, 268
Lsp1109I GCAGC 2 cut(s) 186, 344
LweI GCATC 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 47
MalI GATC 4 cut(s) 43, 90, 120, 231
MboI GATC 4 cut(s) 41, 88, 118, 229
MboII GAAGA 3 cut(s) 16, 71, 169
MflI RGATCY 2 cut(s) 41, 229
MhlI GDGCHC 2 cut(s) 81, 320
MluCI AATT 4 cut(s) 84, 110, 218, 307
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 183, 324
NdeII GATC 4 cut(s) 41, 88, 118, 229
NlaIII CATG 1 cut(s) 269
PfeI GAWTC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 176, 334
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 262
PsuI RGATCY 2 cut(s) 41, 229
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 177
SatI GCNGC 2 cut(s) 175, 333
Sau3AI GATC 4 cut(s) 41, 88, 118, 229
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 293
SduI GDGCHC 2 cut(s) 81, 320
SetI ASST 5 cut(s) 105, 118, 179, 277, 287
SfaNI GCATC 1 cut(s) 161
SinI GGWCC 1 cut(s) 262
Sse9I AATT 4 cut(s) 84, 110, 218, 307
SsiI CCGC 1 cut(s) 32
StyI CCWWGG 1 cut(s) 191
TaqI TCGA 1 cut(s) 314
TasI AATT 4 cut(s) 84, 110, 218, 307
TfiI GAWTC 1 cut(s) 147
TscAI CASTG 1 cut(s) 342
TseI GCWGC 2 cut(s) 174, 332
TspDTI ATGAA 3 cut(s) 17, 72, 170
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 342
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.