Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012585

Physical Location & Seq

Genomic Coordinates Reverse (-)

8396030 .. 8397161

Gene Structure 1132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011306

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAGGAACAAAAAGAAGCAGGAGCAAGATGAGAAACCCTACATTCTGCAGCTGCCAAACCATATCATAGTGGAAATCTTTTGCAAAATACCAATCAAAACACTTGTGAAATGCCGGTTTGTGTGTAAATCCTGGCGCCGTTTGTTTTCAAACCAACAATTTACCAAAGACCTGTTTTTGAAAACACCAACCTACCTTTTGGTCATTGACTCCACGAAGCACCACTTCTTGGTCGACTGGGACAATGCCTCGAGCCCAAAAGATGTTGCATTGAAGGTTTCCGAAGACCTAACTCATAGCCGGAAATTTGCGGGTGTATGCAATGGCTTGCTTTGCCATTACCAAGATTTTGAGCGGGAACTTATCAGTTTTTACATATCCAATCCCATTACTGGTGAGTCTGTACCTCTTGCATTACCTATCGTCGAAACTAGCTCTCAACGTTATGTTGGGACTGGTTTTGGGTTTGGATACAGTCCCAAGACTGAGGTCTATAAAGTAGTACTTCTTATGTCGTTTGCTCAGAAGTTACCAATGCCACCTTGTTGTTTAGATCCCCAGAAAGCTCAGTTGAACCTTGGAGTCTTTAACGGCTGCCTTTCTATAACTGTTCGCTCAAGCTATTATATCAGGATTTGGGTGATGAAGAATTATGGTGTTAAGGAGTCTTGGACCAGAGAGGTTGACATTAGAGAAATACTGGGTGGTGTTGTAAAACGTAGTTGTGATTATCCTACTCGTGTTCTAGAATACACAAAGGAGAAGCAAGTCTTGGTGATAGATAATAGGTTGCAGAGTTATAGTACTCCAAACGAGGGCTTTGTGAAGAATGAGGTTGATGGGATAGAAAATATTCATGATGCTGCATATGTCCATATTCAAAGCTTTGTTCTGCTTAAAGATCTCATCAGGGGTTCGAGCTTATATGTTCAGAGATTTAGGCATGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

318

Amino Acids

36.65

Weight (kDa)

8.99

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 56	3.2e-11	F-box domain
F-box-like	PF12937	15 - 60	4.5e-09	F-box-like
FBA_3	PF08268	85 - 172	5.2e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40010
rosa_chinensis	RchiOBHm_Chr4g0409251 RchiOBHm_Chr6g0300741
rosa_laevigata	RLG00000008583 RLG00000011306
rosa_multiflora	Rmu_sc0001569.1_g000004 Rmu_sc0006723.1_g000005 Rmu_sc0032596.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353720 Rroxscaffold_7G00167460
rosa_rugosa	Rorug04G0091500 Rorug04G0091500
rosa_samantha	Rh4AG154900 Rh4BG152500 Rh4BG175800 Rh4CG163900 Rh4DG147700 Rh6AG411600
rosa_wichuraiana	Rw4G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	2 cut(s)	311, 355
AclI	AACGTT	1 cut(s)	442
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	3 cut(s)	405, 504, 805
AfiI	CCNNNNNNNGG	3 cut(s)	229, 392, 815
AgsI	TTSAA	5 cut(s)	150, 181, 274, 574, 881
AjnI	CCWGG	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	2 cut(s)	755, 787
AluBI	AGCT	6 cut(s)	52, 435, 566, 621, 885, 921
AluI	AGCT	6 cut(s)	52, 435, 566, 621, 885, 921
AlwI	GGATC	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	250
ApeKI	GCWGC	4 cut(s)	49, 52, 594, 863
ApoI	RAATTY	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	672
AsuHPI	GGTGA	3 cut(s)	407, 652, 787
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	672
BanI	GGYRCC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	257
BauI	CACGAG	1 cut(s)	738
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	39, 61, 581, 850
BccI	CCATC	1 cut(s)	833
BceAI	ACGGC	2 cut(s)	123, 607
BciT130I	CCWGG	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	464
BfaI	CTAG	2 cut(s)	432, 746
BfmI	CTRYAG	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	464
BglII	AGATCT	1 cut(s)	901
BisI	GCNGC	4 cut(s)	50, 53, 595, 864
BlsI	GCNGC	4 cut(s)	51, 54, 596, 865
BmcAI	AGTACT	2 cut(s)	504, 805
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	672
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	672
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	133
BmrI	ACTGGG	2 cut(s)	247, 710
BmsI	GCATC	1 cut(s)	850
BmuI	ACTGGG	2 cut(s)	247, 710
BoxI	GACNNNNGTC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	601
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 392, 815
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	4 cut(s)	242, 397, 460, 705
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	577
BseLI	CCNNNNNNNGG	3 cut(s)	229, 392, 815
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	3 cut(s)	477, 536, 581
BseNI	ACTGG	4 cut(s)	242, 397, 460, 705
BseXI	GCAGC	4 cut(s)	39, 61, 581, 850
BshNI	GGYRCC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	115, 301
BslFI	GGGAC	3 cut(s)	254, 462, 466
BslI	CCNNNNNNNGG	3 cut(s)	229, 392, 815
BsmFI	GGGAC	3 cut(s)	254, 462, 466
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	553, 901
BspACI	CCGC	2 cut(s)	311, 355
BspCNI	CTCAG	3 cut(s)	478, 535, 580
BspHI	TCATGA	1 cut(s)	856
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	4 cut(s)	242, 397, 460, 705
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	2 cut(s)	553, 901
BssNI	GRCGYC	1 cut(s)	136
BssSI	CACGAG	1 cut(s)	738
BssT1I	CCWWGG	1 cut(s)	577
Bst2BI	CACGAG	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	476, 610
BstACI	GRCGYC	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	486, 522, 567
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	2 cut(s)	556, 904
BstMBI	GATC	2 cut(s)	553, 901
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstNI	CCWGG	1 cut(s)	133
BstPAI	GACNNNNGTC	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	47
BstV1I	GCAGC	4 cut(s)	39, 61, 581, 850
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	2 cut(s)	553, 901
BstYI	RGATCY	2 cut(s)	553, 901
BsuI	GTATCC	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	329
CciI	TCATGA	1 cut(s)	856
CfoI	GCGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	672
Csp6I	GTAC	3 cut(s)	404, 503, 804
CviAII	CATG	2 cut(s)	857, 944
CviQI	GTAC	3 cut(s)	404, 503, 804
DdeI	CTNAG	3 cut(s)	486, 522, 567
DinI	GGCGCC	1 cut(s)	137
DpnI	GATC	2 cut(s)	555, 903
DpnII	GATC	2 cut(s)	553, 901
Eco130I	CCWWGG	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	257
EgeI	GGCGCC	1 cut(s)	137
EheI	GGCGCC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	2 cut(s)	860, 947
FalI	AAGNNNNNCTT	6 cut(s)	209, 241, 489, 521, 755, 787
FaqI	GGGAC	3 cut(s)	254, 462, 466
FatI	CATG	2 cut(s)	856, 943
FauI	CCCGC	2 cut(s)	304, 348
FauNDI	CATATG	1 cut(s)	868
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	4 cut(s)	50, 53, 595, 864
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	4 cut(s)	50, 53, 595, 864
FspBI	CTAG	2 cut(s)	432, 746
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	4 cut(s)	50, 53, 595, 864
HaeII	RGCGCY	1 cut(s)	139
HapII	CCGG	2 cut(s)	115, 301
HhaI	GCGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	860, 947
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	2 cut(s)	235, 685
HindII	GTYRAC	2 cut(s)	235, 685
HindIII	AAGCTT	1 cut(s)	883
HinfI	GANTC	4 cut(s)	209, 398, 582, 665
HpaII	CCGG	2 cut(s)	115, 301
HphI	GGTGA	3 cut(s)	407, 652, 787
Hpy166II	GTNNAC	2 cut(s)	235, 685
Hpy188I	TCNGA	3 cut(s)	283, 525, 933
Hpy188III	TCNNGA	3 cut(s)	631, 746, 857
Hpy8I	GTNNAC	2 cut(s)	235, 685
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	476, 610
HpyCH4IV	ACGT	2 cut(s)	442, 718
HpyCH4V	TGCA	7 cut(s)	49, 84, 269, 321, 413, 793, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	3 cut(s)	486, 522, 567
HpySE526I	ACGT	2 cut(s)	442, 718
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	860, 947
HspAI	GCGC	1 cut(s)	136
KasI	GGCGCC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	553, 901
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	4 cut(s)	39, 61, 581, 850
LweI	GCATC	1 cut(s)	850
MaeI	CTAG	2 cut(s)	432, 746
MaeII	ACGT	2 cut(s)	442, 718
MaeIII	GTNAC	1 cut(s)	528
MalI	GATC	2 cut(s)	555, 903
MbiI	CCGCTC	1 cut(s)	355
MboI	GATC	2 cut(s)	553, 901
MboII	GAAGA	3 cut(s)	296, 658, 838
MflI	RGATCY	2 cut(s)	553, 901
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	3 cut(s)	158, 305, 649
Mly113I	GGCGCC	1 cut(s)	136
MlyI	GAGTC	4 cut(s)	203, 407, 591, 674
MnlI	CCTC	6 cut(s)	259, 417, 481, 673, 808, 826
MroXI	GAANNNNTTC	1 cut(s)	852
MseI	TTAA	3 cut(s)	588, 660, 897
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	2 cut(s)	115, 301
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	333
NarI	GGCGCC	1 cut(s)	136
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	2 cut(s)	553, 901
NlaIII	CATG	2 cut(s)	860, 947
NlaIV	GGNNCC	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	250
PagI	TCATGA	1 cut(s)	856
PdmI	GAANNNNTTC	1 cut(s)	852
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	4 cut(s)	51, 54, 596, 865
PleI	GAGTC	4 cut(s)	203, 406, 590, 673
PluTI	GGCGCC	1 cut(s)	139
PpsI	GAGTC	4 cut(s)	203, 406, 590, 673
PshAI	GACNNNNGTC	1 cut(s)	488
Psp1406I	AACGTT	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	672
PspXI	VCTCGAGB	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	2 cut(s)	553, 901
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	3 cut(s)	405, 504, 805
RsaNI	GTAC	3 cut(s)	404, 503, 804
SalI	GTCGAC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	588, 660, 897
SatI	GCNGC	4 cut(s)	50, 53, 595, 864
Sau3AI	GATC	2 cut(s)	553, 901
Sau96I	GGNCC	1 cut(s)	672
ScaI	AGTACT	2 cut(s)	504, 805
SchI	GAGTC	4 cut(s)	203, 407, 591, 674
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	257
SfaNI	GCATC	1 cut(s)	850
SfcI	CTRYAG	1 cut(s)	47
SfoI	GGCGCC	1 cut(s)	137
Sfr274I	CTCGAG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	672
SlaI	CTCGAG	1 cut(s)	250
SmlI	CTYRAG	2 cut(s)	250, 616
SmoI	CTYRAG	2 cut(s)	250, 616
Sse9I	AATT	3 cut(s)	158, 305, 649
SsiI	CCGC	2 cut(s)	311, 355
SspDI	GGCGCC	1 cut(s)	135
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	2 cut(s)	432, 746
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	2 cut(s)	476, 610
TaiI	ACGT	2 cut(s)	445, 721
TaqI	TCGA	4 cut(s)	234, 251, 426, 917
TasI	AATT	3 cut(s)	158, 305, 649
TatI	WGTACW	2 cut(s)	502, 803
Tru1I	TTAA	3 cut(s)	588, 660, 897
Tru9I	TTAA	3 cut(s)	588, 660, 897
TseI	GCWGC	4 cut(s)	49, 52, 594, 863
TspDTI	ATGAA	2 cut(s)	659, 845
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	672
XapI	RAATTY	1 cut(s)	305
XbaI	TCTAGA	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	2 cut(s)	432, 746
ZrmI	AGTACT	2 cut(s)	504, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.