Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032596.1

Orthogroup ID

OG0012585

Physical Location & Seq

Genomic Coordinates Forward (+)

66 .. 3606

Gene Structure 3541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032596.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

atgaaatgcaggcatgtctgcaaatctttgcgatctttgttcgcagacccgcaatttaccgaagacctattctctcgaacgcgcccttgccatttggtctcgagcctcaattcggataggtacttcttggtcgacttcaacgagcggaggccaaacggcgtcgcagcactggatctttctatagactcagcgactcctagcagtgcaatcatggtgggatcttgcaagggcttggtctgcctatacaagatgtactgcccttacggtttttacatatgcaatccaatgactggtgagtcttcatctcttccacctcctattagggaagttgattccagtttcctttattggcctttatctctagaggaggatttaactcctgtagagtccactcctacaagacacagtgaggaaattttggagccatctttttgtggatttgggttgggatatagtaccataagtgatgtatacaaaattgttctaattgcttattcaagaaaaatgaggatggggattcggcctccaggtgagattgcgtatggacctcgggaggtgatggttttgactgtggactcagagggttggagacatgttggggaatttgatatgaacaattttgatcatgtacatggagtttatattcatgattctcttcattggactggcctgccggtaaagggtcctcgtttgatatatgcatttgacgttggaagggagtgtttccgagagctaacagtaccttgttggacttcttcggagagccaaatgactagattcaaccttggaatcttgaatgattgcctctctataactgtttgttggagagctagtatccatgtttgggtgatgaagcattacggtgtcgaggactcttggaccaaagagcttgacattagtgtggaatatggtccgtcgtcgtttggtggttactcacaaattttgagtgtttcaccagaatggcaagtcctgttgtggcagggtaggttgcaggctcatactgctggaagtgagggctttgttggggttcaggttgatgggataccatcttcggttgacaaagcctatccccatgttccaagctttatttcacttaaagatgttatcaggtgtcagaaccctgaggggcaaggaaatgtgcaaaccactgcagtagatcatgggaatgctaaggaagataaacagaatttgcaatctaatgctcatggattaaatcaagggaatgtgcaatctgtaactgtaccagtagatcaacagcaacagggccaactgaatgtgcaatccaatgcagcagatcatgggaatgctgaagcagataaagggaatgtgcaatctaacgctgatcaattagatcaagggaatttgcaatctatagctgtaacaattacccaagaaagacaggtaattatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

470

Amino Acids

52.29

Weight (kDa)

5.3

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40010
rosa_chinensis	RchiOBHm_Chr4g0409251 RchiOBHm_Chr6g0300741
rosa_laevigata	RLG00000008583 RLG00000011306
rosa_multiflora	Rmu_sc0001569.1_g000004 Rmu_sc0006723.1_g000005 Rmu_sc0032596.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353720 Rroxscaffold_7G00167460
rosa_rugosa	Rorug04G0091500 Rorug04G0091500
rosa_samantha	Rh4AG154900 Rh4BG152500 Rh4BG175800 Rh4CG163900 Rh4DG147700 Rh6AG411600
rosa_wichuraiana	Rw4G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	145
AccI	GTMKAC	2 cut(s)	132, 471
AccII	CGCG	1 cut(s)	82
AciI	CCGC	2 cut(s)	50, 145
AclWI	GGATC	2 cut(s)	180, 226
AcsI	RAATTY	5 cut(s)	414, 602, 939, 1186, 1360
AcuI	CTGAAG	1 cut(s)	1329
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	6 cut(s)	122, 254, 457, 630, 741, 1242
AfiI	CCNNNNNNNGG	4 cut(s)	112, 290, 680, 844
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	4 cut(s)	139, 498, 781, 796
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	1072, 1104
AluBI	AGCT	5 cut(s)	733, 830, 889, 1083, 1376
AluI	AGCT	5 cut(s)	733, 830, 889, 1083, 1376
Alw26I	GTCTC	2 cut(s)	103, 583
AlwI	GGATC	2 cut(s)	180, 226
Ama87I	CYCGRG	2 cut(s)	100, 549
AoxI	GGCC	5 cut(s)	149, 350, 521, 667, 1264
ApeKI	GCWGC	2 cut(s)	164, 1289
ApoI	RAATTY	5 cut(s)	414, 602, 939, 1186, 1360
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	5 cut(s)	545, 683, 879, 911, 1264
AsuHPI	GGTGA	5 cut(s)	305, 542, 568, 859, 945
AvaI	CYCGRG	2 cut(s)	100, 549
AvaII	GGWCC	4 cut(s)	545, 683, 879, 911
AxyI	CCTNAGG	1 cut(s)	1122
BbsI	GAAGAC	2 cut(s)	69, 291
BbvI	GCAGC	2 cut(s)	176, 1301
BccI	CCATC	5 cut(s)	433, 505, 553, 1031, 1054
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	2 cut(s)	845, 1035
BclI	TGATCA	2 cut(s)	622, 1342
BcoDI	GTCTC	2 cut(s)	103, 583
BfaI	CTAG	4 cut(s)	198, 362, 774, 831
BfmI	CTRYAG	4 cut(s)	180, 381, 1149, 1371
BfuI	GTATCC	2 cut(s)	845, 1035
BisI	GCNGC	2 cut(s)	165, 1290
BlsI	GCNGC	2 cut(s)	166, 1291
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	4 cut(s)	545, 683, 879, 911
BmeT110I	CYCGRG	2 cut(s)	100, 549
BmgT120I	GGNCC	5 cut(s)	545, 683, 879, 911, 1264
BmiI	GGNNCC	2 cut(s)	423, 684
BmrFI	CCNGG	1 cut(s)	528
BpiI	GAAGAC	2 cut(s)	69, 291
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	1170
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	548, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	817, 847
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 290, 680, 844
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	5 cut(s)	174, 295, 336, 670, 1244
Bse21I	CCTNAGG	1 cut(s)	1122
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	548, 784
BseGI	GGATG	1 cut(s)	516
BseLI	CCNNNNNNNGG	4 cut(s)	112, 290, 680, 844
BseMII	CTCAG	3 cut(s)	201, 591, 1113
BseNI	ACTGG	5 cut(s)	174, 295, 336, 670, 1244
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	176, 1301
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	5 cut(s)	151, 352, 523, 669, 1266
BsiHKCI	CYCGRG	2 cut(s)	100, 549
BsiSI	CCGG	1 cut(s)	674
BslI	CCNNNNNNNGG	4 cut(s)	112, 290, 680, 844
BsmAI	GTCTC	2 cut(s)	103, 583
BsmI	GAATGC	2 cut(s)	1171, 1309
BsnI	GGCC	5 cut(s)	151, 352, 523, 669, 1266
Bso31I	GGTCTC	1 cut(s)	103
BsoBI	CYCGRG	2 cut(s)	100, 549
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	9 cut(s)	32, 172, 218, 622, 1156, 1249, 1294, 1342, 1351
BspACI	CCGC	2 cut(s)	50, 145
BspANI	GGCC	5 cut(s)	151, 352, 523, 669, 1266
BspCNI	CTCAG	3 cut(s)	200, 590, 1114
BspFNI	CGCG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	423, 684
BspMAI	CTGCAG	1 cut(s)	1153
BspPI	GGATC	2 cut(s)	180, 226
BspTNI	GGTCTC	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	673
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	5 cut(s)	174, 295, 336, 670, 1244
BssAI	RCCGGY	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	548, 784
BssMI	GATC	9 cut(s)	32, 172, 218, 622, 1156, 1249, 1294, 1342, 1351
BssNAI	GTATAC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	784
Bst1107I	GTATAC	1 cut(s)	472
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	7 cut(s)	266, 407, 571, 739, 817, 863, 1240
Bst6I	CTCTTC	2 cut(s)	312, 660
BstACI	GRCGYC	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	628
BstC8I	GCNNGC	3 cut(s)	11, 671, 993
BstDEI	CTNAG	4 cut(s)	187, 577, 1122, 1170
BstF5I	GGATG	1 cut(s)	516
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	9 cut(s)	35, 175, 221, 625, 1159, 1252, 1297, 1345, 1354
BstMAI	GTCTC	2 cut(s)	103, 583
BstMBI	GATC	9 cut(s)	32, 172, 218, 622, 1156, 1249, 1294, 1342, 1351
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 1001
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	2 cut(s)	17, 596
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	4 cut(s)	180, 381, 1149, 1371
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	176, 1301
BstV2I	GAAGAC	2 cut(s)	69, 291
BstX2I	RGATCY	2 cut(s)	172, 218
BstYI	RGATCY	2 cut(s)	172, 218
BstZ17I	GTATAC	1 cut(s)	472
Bsu36I	CCTNAGG	1 cut(s)	1122
BsuI	GTATCC	2 cut(s)	845, 1035
BsuRI	GGCC	5 cut(s)	151, 352, 523, 669, 1266
BtsCI	GGATG	1 cut(s)	516
BtsI	GCAGTG	2 cut(s)	208, 1146
BtsIMutI	CAGTG	4 cut(s)	167, 208, 412, 1146
Cac8I	GCNNGC	3 cut(s)	11, 671, 993
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	673
Cfr13I	GGNCC	5 cut(s)	545, 683, 879, 911, 1264
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	6 cut(s)	121, 253, 456, 629, 740, 1241
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviQI	GTAC	6 cut(s)	121, 253, 456, 629, 740, 1241
DdeI	CTNAG	4 cut(s)	187, 577, 1122, 1170
DpnI	GATC	9 cut(s)	34, 174, 220, 624, 1158, 1251, 1296, 1344, 1353
DpnII	GATC	9 cut(s)	32, 172, 218, 622, 1156, 1249, 1294, 1342, 1351
DrdI	GACNNNNNNGTC	1 cut(s)	295
DseDI	GACNNNNNNGTC	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	312, 660
EarI	CTCTTC	2 cut(s)	312, 660
Eco130I	CCWWGG	1 cut(s)	784
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	4 cut(s)	545, 683, 879, 911
Eco57I	CTGAAG	1 cut(s)	1329
Eco81I	CCTNAGG	1 cut(s)	1122
Eco88I	CYCGRG	2 cut(s)	100, 549
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	784
EcoT22I	ATGCAT	1 cut(s)	703
ErhI	CCWWGG	1 cut(s)	784
FauI	CCCGC	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	275
FbaI	TGATCA	2 cut(s)	622, 1342
FblI	GTMKAC	2 cut(s)	132, 471
Fnu4HI	GCNGC	2 cut(s)	165, 1290
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	2 cut(s)	165, 1290
FspBI	CTAG	4 cut(s)	198, 362, 774, 831
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	165, 1290
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	5 cut(s)	151, 352, 523, 669, 1266
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	2 cut(s)	133, 1057
HindII	GTYRAC	2 cut(s)	133, 1057
HindIII	AAGCTT	1 cut(s)	1081
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	5 cut(s)	305, 542, 568, 859, 945
Hpy166II	GTNNAC	5 cut(s)	133, 390, 472, 574, 1057
Hpy188I	TCNGA	5 cut(s)	115, 580, 728, 760, 1116
Hpy188III	TCNNGA	7 cut(s)	75, 100, 362, 498, 551, 647, 793
Hpy8I	GTNNAC	5 cut(s)	133, 390, 472, 574, 1057
Hpy99I	CGWCG	3 cut(s)	164, 919, 922
HpyAV	CCTTC	1 cut(s)	708
HpyCH4III	ACNGT	7 cut(s)	266, 407, 571, 739, 817, 863, 1240
HpyCH4IV	ACGT	1 cut(s)	708
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 1001
HpyF3I	CTNAG	4 cut(s)	187, 577, 1122, 1170
HpySE526I	ACGT	1 cut(s)	708
Hsp92I	GRCGYC	1 cut(s)	159
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	2 cut(s)	622, 1342
Kzo9I	GATC	9 cut(s)	32, 172, 218, 622, 1156, 1249, 1294, 1342, 1351
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	2 cut(s)	176, 1301
MaeI	CTAG	4 cut(s)	198, 362, 774, 831
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	3 cut(s)	929, 1234, 1378
MalI	GATC	9 cut(s)	34, 174, 220, 624, 1158, 1251, 1296, 1344, 1353
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	9 cut(s)	32, 172, 218, 622, 1156, 1249, 1294, 1342, 1351
MboII	GAAGA	7 cut(s)	74, 291, 299, 647, 747, 1041, 1187
MflI	RGATCY	2 cut(s)	172, 218
MlyI	GAGTC	6 cut(s)	179, 187, 305, 395, 569, 866
MmeI	TCCRAC	4 cut(s)	566, 691, 728, 803
Mph1103I	ATGCAT	1 cut(s)	703
MseI	TTAA	3 cut(s)	374, 1095, 1211
MslI	CAYNNNNRTG	6 cut(s)	630, 861, 899, 958, 1164, 1302
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	2 cut(s)	1171, 1309
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	237, 1001
NdeI	CATATG	1 cut(s)	275
NdeII	GATC	9 cut(s)	32, 172, 218, 622, 1156, 1249, 1294, 1342, 1351
NlaIV	GGNNCC	2 cut(s)	423, 684
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	2 cut(s)	17, 596
PaeR7I	CTCGAG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	646
PciI	ACATGT	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	2 cut(s)	1171, 1309
PfeI	GAWTC	5 cut(s)	332, 517, 650, 777, 789
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	166, 1291
PleI	GAGTC	6 cut(s)	179, 187, 304, 394, 569, 866
PpsI	GAGTC	6 cut(s)	179, 187, 304, 394, 569, 866
PpuMI	RGGWCCY	1 cut(s)	683
PscI	ACATGT	1 cut(s)	592
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	423, 684
PspPI	GGNCC	5 cut(s)	545, 683, 879, 911, 1264
PspPPI	RGGWCCY	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	1153
PsuI	RGATCY	2 cut(s)	172, 218
RsaI	GTAC	6 cut(s)	122, 254, 457, 630, 741, 1242
RsaNI	GTAC	6 cut(s)	121, 253, 456, 629, 740, 1241
RseI	CAYNNNNRTG	6 cut(s)	630, 861, 899, 958, 1164, 1302
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	374, 1095, 1211
SatI	GCNGC	2 cut(s)	165, 1290
Sau3AI	GATC	9 cut(s)	32, 172, 218, 622, 1156, 1249, 1294, 1342, 1351
Sau96I	GGNCC	5 cut(s)	545, 683, 879, 911, 1264
SchI	GAGTC	6 cut(s)	179, 187, 305, 395, 569, 866
ScrFI	CCNGG	1 cut(s)	528
SfcI	CTRYAG	4 cut(s)	180, 381, 1149, 1371
Sfr274I	CTCGAG	1 cut(s)	100
SinI	GGWCC	4 cut(s)	545, 683, 879, 911
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	6 cut(s)	630, 861, 899, 958, 1164, 1302
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
SsiI	CCGC	2 cut(s)	50, 145
SspMI	CTAG	4 cut(s)	198, 362, 774, 831
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	784
TaaI	ACNGT	7 cut(s)	266, 407, 571, 739, 817, 863, 1240
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	4 cut(s)	76, 101, 132, 867
TatI	WGTACW	2 cut(s)	252, 628
TfiI	GAWTC	5 cut(s)	332, 517, 650, 777, 789
Tru1I	TTAA	3 cut(s)	374, 1095, 1211
Tru9I	TTAA	3 cut(s)	374, 1095, 1211
TscAI	CASTG	4 cut(s)	174, 208, 412, 1153
TseI	GCWGC	2 cut(s)	164, 1289
TspDTI	ATGAA	6 cut(s)	17, 291, 626, 635, 647, 866
TspGWI	ACGGA	1 cut(s)	903
TspRI	CASTG	4 cut(s)	174, 208, 412, 1153
Van91I	CCANNNNNTGG	1 cut(s)	290
VpaK11BI	GGWCC	4 cut(s)	545, 683, 879, 911
XapI	RAATTY	5 cut(s)	414, 602, 939, 1186, 1360
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	2 cut(s)	17, 596
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	2 cut(s)	132, 471
XspI	CTAG	4 cut(s)	198, 362, 774, 831
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.