Rorug04G0091500

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012585
Physical Location & Seq
Forward (+)
14125458 .. 14128338
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0091500.1

Sequence Viewer

Length: 897 bp
ATGTACTCTGTACAATTGTACTCTCCAAACCTCTTCCATAATACAATACCCTTTCTCCTTCCCGTCTCTTCAAAACTTTCCACCATGACTTCTCAGGCACACATCACTCTTTCAGAGGAGAATGAAGAAGAAGAAGCAGTACTGGTAATCAATGATGGAGAAGCTGATGGCAACGTGAAGTTTCGGATACGAAATCTGACCAGAAGATCAGAAAGTACAGGAGGAGGAGCTATCATACTGAATAAGCTGAGCGTGGACATCCCAAAAGGAGTGATCGTCGGAATCATAGGCCCAAGTGGCAGCGGCAAATCCACGCTTCTCCGAGCACTCAACCGCCTCTGGGAGCCGCCGGCCGGCACTGTCTTCTTGGACGGCCATGATATTAAAGAACTCGATGTTCTCAGTCTCCGGAGGACGGTCGGAATGCTCTTCCAGCTTCCTGTTCTTTTTGAAGGTACTGTTGCAGACAACGTTCGTTATGGTCCTCAGTTGAGTGGGAAGAAGCTGACTGATCAAGATGTTCATAAGCTACTGACCCTTGCAGGCCTTGATTTATCTTTTTTCAGTAAAACAGGTTCTGAAATATCTGTAGGCCAAGCCCAAAGAGTTGCACTTGCTAGGACCCTAGCCAATTCACCTGAGGTTTTGCTGTTAGACGAGCCTACTAGCGCCTTGGATCCAATATCAACAGAGCACATAGAAGGTGTTTTAGAAAAGCTGAAGAAGAAACGGGGCATGACAATCATAATGGTCTCACACAGCATCAAACAAATCCAGAGAATTGCTGATGTAGTGTGTCTCCTTGTGAATGGTGAGGTTGTTGAAGTTTTAAAACCAGATAAACTCTCAGAAGCCAAGCACCCTATGGCCTTGAGGTTTCTTGAACTCAGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

298

Amino Acids

32.51

Weight (kDa)

6.19

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 80 - 223 1.1e-32 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 408
AciI CCGC 3 cut(s) 303, 334, 347
AclI AACGTT 1 cut(s) 471
AclWI GGATC 2 cut(s) 671, 684
AcoI YGGCCR 2 cut(s) 351, 373
AcuI CTGAAG 1 cut(s) 740
AfaI GTAC 6 cut(s) 5, 12, 20, 141, 217, 457
AfiI CCNNNNNNNGG 3 cut(s) 340, 353, 415
AgsI TTSAA 4 cut(s) 72, 452, 824, 884
AluBI AGCT 8 cut(s) 164, 230, 247, 436, 505, 529, 718, 891
AluI AGCT 8 cut(s) 164, 230, 247, 436, 505, 529, 718, 891
Alw21I GWGCWC 2 cut(s) 328, 696
Alw26I GTCTC 4 cut(s) 70, 410, 757, 803
AlwI GGATC 2 cut(s) 671, 684
AlwNI CAGNNNCTG 1 cut(s) 578
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 6 cut(s) 289, 351, 373, 544, 592, 867
ApeKI GCWGC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 671
AspS9I GGNCC 3 cut(s) 290, 482, 621
AsuHPI GGTGA 2 cut(s) 627, 824
AvaII GGWCC 2 cut(s) 482, 621
AxyI CCTNAGG 1 cut(s) 639
BamHI GGATCC 1 cut(s) 676
BarI GAAGNNNNNNTAC 2 cut(s) 123, 155
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 2 cut(s) 328, 696
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 149, 161
BceAI ACGGC 1 cut(s) 388
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 4 cut(s) 70, 410, 757, 803
BfaI CTAG 3 cut(s) 618, 626, 666
BfmI CTRYAG 1 cut(s) 588
BfoI RGCGCY 1 cut(s) 672
BfuI GTATCC 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 297
BisI GCNGC 3 cut(s) 301, 304, 347
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 3 cut(s) 302, 305, 348
BmcAI AGTACT 1 cut(s) 141
Bme18I GGWCC 2 cut(s) 482, 621
BmgT120I GGNCC 3 cut(s) 290, 482, 621
BmiI GGNNCC 3 cut(s) 345, 623, 678
BmsI GCATC 1 cut(s) 771
BpiI GAAGAC 1 cut(s) 355
Bpu1102I GCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 892
BsaI GGTCTC 1 cut(s) 757
BsaJI CCNNGG 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 408
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 261, 291
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 353, 415
Bse118I RCCGGY 2 cut(s) 349, 353
Bse1I ACTGG 1 cut(s) 147
Bse21I CCTNAGG 1 cut(s) 639
BseAI TCCGGA 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 3 cut(s) 340, 353, 415
BseMII CTCAG 6 cut(s) 107, 239, 415, 500, 630, 861
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 3 cut(s) 131, 237, 240
BseX3I CGGCCG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 312
Bsh1285I CGRYCG 2 cut(s) 354, 420
BshFI GGCC 6 cut(s) 291, 353, 375, 546, 594, 869
BsiEI CGRYCG 2 cut(s) 354, 420
BsiHKAI GWGCWC 2 cut(s) 328, 696
BsiSI CCGG 3 cut(s) 350, 354, 409
BslI CCNNNNNNNGG 3 cut(s) 340, 353, 415
BsmAI GTCTC 4 cut(s) 70, 410, 757, 803
BsmBI CGTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 6 cut(s) 291, 353, 375, 546, 594, 869
Bso31I GGTCTC 1 cut(s) 757
Bsp1286I GDGCHC 2 cut(s) 328, 696
Bsp13I TCCGGA 1 cut(s) 408
Bsp1407I TGTACA 1 cut(s) 10
Bsp143I GATC 4 cut(s) 206, 273, 511, 676
Bsp1720I GCTNAGC 1 cut(s) 248
BspACI CCGC 3 cut(s) 303, 334, 347
BspANI GGCC 6 cut(s) 291, 353, 375, 546, 594, 869
BspCNI CTCAG 6 cut(s) 106, 240, 414, 499, 631, 860
BspEI TCCGGA 1 cut(s) 408
BspLI GGNNCC 3 cut(s) 345, 623, 678
BspPI GGATC 2 cut(s) 671, 684
BspQI GCTCTTC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 757
BsrFI RCCGGY 2 cut(s) 349, 353
BsrGI TGTACA 1 cut(s) 10
BsrI ACTGG 1 cut(s) 147
BssAI RCCGGY 2 cut(s) 349, 353
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 4 cut(s) 206, 273, 511, 676
BssT1I CCWWGG 1 cut(s) 672
Bst4CI ACNGT 3 cut(s) 361, 418, 460
Bst6I CTCTTC 3 cut(s) 38, 73, 434
BstAUI TGTACA 1 cut(s) 10
BstC8I GCNNGC 3 cut(s) 351, 355, 544
BstDEI CTNAG 8 cut(s) 93, 248, 401, 486, 639, 847, 887, 894
BstF5I GGATG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 4 cut(s) 209, 276, 514, 679
BstMAI GTCTC 4 cut(s) 70, 410, 757, 803
BstMBI GATC 4 cut(s) 206, 273, 511, 676
BstMCI CGRYCG 2 cut(s) 354, 420
BstMWI GCNNNNNNNGC 2 cut(s) 297, 433
BstSFI CTRYAG 1 cut(s) 588
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BstZI CGGCCG 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 639
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 6 cut(s) 291, 353, 375, 546, 594, 869
BtsCI GGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 351, 355, 544
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 1 cut(s) 671
Cfr10I RCCGGY 2 cut(s) 349, 353
Cfr13I GGNCC 3 cut(s) 290, 482, 621
Csp6I GTAC 6 cut(s) 4, 11, 19, 140, 216, 456
CviAII CATG 3 cut(s) 85, 377, 736
CviQI GTAC 6 cut(s) 4, 11, 19, 140, 216, 456
DdeI CTNAG 8 cut(s) 93, 248, 401, 486, 639, 847, 887, 894
DpnI GATC 4 cut(s) 208, 275, 513, 678
DpnII GATC 4 cut(s) 206, 273, 511, 676
DraI TTTAAA 1 cut(s) 831
EaeI YGGCCR 2 cut(s) 351, 373
EagI CGGCCG 1 cut(s) 351
Eam1104I CTCTTC 3 cut(s) 38, 73, 434
EarI CTCTTC 3 cut(s) 38, 73, 434
EclXI CGGCCG 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 672
Eco147I AGGCCT 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 757
Eco47I GGWCC 2 cut(s) 482, 621
Eco52I CGGCCG 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 740
Eco81I CCTNAGG 1 cut(s) 639
EcoO109I RGGNCCY 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 3 cut(s) 88, 380, 739
FatI CATG 3 cut(s) 84, 376, 735
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 301, 304, 347
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 3 cut(s) 301, 304, 347
FspBI CTAG 3 cut(s) 618, 626, 666
GlaI GCGC 1 cut(s) 670
GluI GCNGC 3 cut(s) 301, 304, 347
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 6 cut(s) 291, 353, 375, 546, 594, 869
HapII CCGG 3 cut(s) 350, 354, 409
HhaI GCGC 1 cut(s) 671
Hin1II CATG 3 cut(s) 88, 380, 739
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HinfI GANTC 1 cut(s) 282
HpaII CCGG 3 cut(s) 350, 354, 409
HphI GGTGA 2 cut(s) 627, 824
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 9 cut(s) 115, 186, 198, 211, 281, 323, 422, 580, 850
Hpy188III TCNNGA 4 cut(s) 409, 515, 775, 881
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 68, 446, 695
HpyCH4III ACNGT 3 cut(s) 361, 418, 460
HpyCH4IV ACGT 2 cut(s) 174, 471
HpyCH4V TGCA 3 cut(s) 464, 542, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 433
HpyF3I CTNAG 8 cut(s) 93, 248, 401, 486, 639, 847, 887, 894
HpySE526I ACGT 2 cut(s) 174, 471
Hsp92II CATG 3 cut(s) 88, 380, 739
HspAI GCGC 1 cut(s) 669
Kpn2I TCCGGA 1 cut(s) 408
KroI GCCGGC 2 cut(s) 349, 353
KroNI GCCGGC 2 cut(s) 351, 355
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 206, 273, 511, 676
LguI GCTCTTC 1 cut(s) 434
LmnI GCTCC 2 cut(s) 227, 343
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 1 cut(s) 771
MaeI CTAG 3 cut(s) 618, 626, 666
MaeII ACGT 2 cut(s) 174, 471
MalI GATC 4 cut(s) 208, 275, 513, 678
MboI GATC 4 cut(s) 206, 273, 511, 676
MfeI CAATTG 1 cut(s) 14
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 2 cut(s) 328, 696
MluCI AATT 3 cut(s) 14, 631, 780
MmeI TCCRAC 2 cut(s) 259, 400
MroI TCCGGA 1 cut(s) 408
MroNI GCCGGC 2 cut(s) 349, 353
MseI TTAA 2 cut(s) 384, 830
MspA1I CMGCKG 1 cut(s) 303
MspI CCGG 3 cut(s) 350, 354, 409
MunI CAATTG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 297, 433
NaeI GCCGGC 2 cut(s) 351, 355
NdeII GATC 4 cut(s) 206, 273, 511, 676
NgoMIV GCCGGC 2 cut(s) 349, 353
NlaIII CATG 3 cut(s) 88, 380, 739
NlaIV GGNNCC 3 cut(s) 345, 623, 678
PceI AGGCCT 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 434
PctI GAATGC 1 cut(s) 429
PdiI GCCGGC 2 cut(s) 351, 355
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 3 cut(s) 302, 305, 348
PpuMI RGGWCCY 1 cut(s) 621
Psp1406I AACGTT 1 cut(s) 471
Psp5II RGGWCCY 1 cut(s) 621
PspN4I GGNNCC 3 cut(s) 345, 623, 678
PspPI GGNCC 3 cut(s) 290, 482, 621
PspPPI RGGWCCY 1 cut(s) 621
PsrI GAACNNNNNNTAC 2 cut(s) 559, 591
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 676
RsaI GTAC 6 cut(s) 5, 12, 20, 141, 217, 457
RsaNI GTAC 6 cut(s) 4, 11, 19, 140, 216, 456
SapI GCTCTTC 1 cut(s) 434
SaqAI TTAA 2 cut(s) 384, 830
SatI GCNGC 3 cut(s) 301, 304, 347
Sau3AI GATC 4 cut(s) 206, 273, 511, 676
Sau96I GGNCC 3 cut(s) 290, 482, 621
ScaI AGTACT 1 cut(s) 141
SduI GDGCHC 2 cut(s) 328, 696
SfaNI GCATC 1 cut(s) 771
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 2 cut(s) 482, 621
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
Sse9I AATT 3 cut(s) 14, 631, 780
SseBI AGGCCT 1 cut(s) 546
SsiI CCGC 3 cut(s) 303, 334, 347
SspMI CTAG 3 cut(s) 618, 626, 666
StuI AGGCCT 1 cut(s) 546
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 3 cut(s) 361, 418, 460
TaiI ACGT 2 cut(s) 177, 474
TaqI TCGA 1 cut(s) 393
TasI AATT 3 cut(s) 14, 631, 780
TatI WGTACW 5 cut(s) 3, 10, 18, 139, 215
TauI GCSGC 2 cut(s) 306, 349
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 384, 830
Tru9I TTAA 2 cut(s) 384, 830
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 300
TspDTI ATGAA 2 cut(s) 138, 512
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 482, 621
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XspI CTAG 3 cut(s) 618, 626, 666
ZrmI AGTACT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.