Rh4BG152500

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012585
Physical Location & Seq
Forward (+)
27382275 .. 27409001
26727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG152500.1

Sequence Viewer

Length: 1224 bp
ATGAAGAATACCGAGCTATGCCATAGCCGCCGACCTCAGAAGCAACATGAGAAGGAAGACGACGATGATCAGAAACCCTACCTTGTACAATTGCCAGACCATATAATTGCCGATATCTCCTGCAAAATCCCAATCAAGACCCTCATGAAATGCAGGCATGTCTGCAAATCTTTGCGATCTTTGTTCGCAGACCCGCAATTTACCGAAGACCTATTCTCTCGAACACGCCCTTGCCATTTGGTCTCGAGCCTCAATTCGGATAGGTACTTCTTGGTCGACTTCAACGAGCGGAGGCCAAACGGCGTCGCAGCACTGGATCTTTCTATAGACTCAGCGACTCCTAGCAGCGCAATCGTGGTGGGATCTTGCAAGGGCTTGGTCTGCTTATACAAGATGTACTGCCCTTACTGTTTTTACATATGCAATCCAATGACTGGTGATTCCAGTTTCCTTTATTGGCCTTTATCTCTGGAGGAGGAGTTAGCTCCTGTAGAGTCCGCTCCTACAAGACACAGTGAGGAAATTTTGGAGCCATCTTTTTGTGGATTTGGGTTGGGATATAGTACCATAAATGGTGTCTACAAAATTGTTCTTATTGCTTATTCAAGAAAAATGAGGATGGGGATTCGGCCTCCAGGTGAGATTGCGTATGGACCTCGGGAGGTGATGGTTTTGACTGTGGACTCAGGGGGTTGGAGACATGTTGGGGAATTTGATATGAACAATTTTGATCATGTACATGGAGTTTATATTCATGATTGTCTTCATTGGACTGGCCTGCCGGGTAGGTTGCAGGCTCATACTGCTGGAAGTGAGGGCTTTGTTGGGCTTCAGGTTGATGGGATACCATCTTCGGTTGACAAAGCCTATCCCCATGTTCCAAGCTTTATTTCACTTAAAGATGTTATCAGGTGTCAGAACCCTGAGGGGCAAGGAAATGTGCAAACCAATGCAGCAGATCATGGGAATGCTAAGGAAGATAAACAGAATTTGCAATCTAATGCTTATGGATTAAATCAAGGGAATGTGCAATCTGTAACTGTACCAGTCGATCAACAGCAACAGGGCCAACTGAATGTGCAATCCAATGCAGCAGATCATGGGAATGCTGAAGCAGATAAAGGGAATGTGCAATCTAATGCTGATCAATTAGATCAAGGGATTTTGCAATCTATAGCTGGATTAGCTGCAACAATTACCCAAGAAACACAGGTAATTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

407

Amino Acids

44.97

Weight (kDa)

5.57

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 68 7.8e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AccBSI CCGCTC 2 cut(s) 289, 500
AccI GTMKAC 2 cut(s) 276, 579
AciI CCGC 4 cut(s) 28, 194, 289, 498
AclWI GGATC 2 cut(s) 324, 370
AcsI RAATTY 3 cut(s) 522, 710, 988
AcuI CTGAAG 2 cut(s) 815, 1131
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 6 cut(s) 87, 266, 398, 565, 738, 1044
AfiI CCNNNNNNNGG 2 cut(s) 256, 434
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 2 cut(s) 283, 606
AjnI CCWGG 1 cut(s) 634
AjuI GAANNNNNNNTTGG 2 cut(s) 874, 906
AluBI AGCT 5 cut(s) 16, 485, 885, 1178, 1187
AluI AGCT 5 cut(s) 16, 485, 885, 1178, 1187
Alw26I GTCTC 2 cut(s) 247, 691
AlwI GGATC 2 cut(s) 324, 370
Ama87I CYCGRG 2 cut(s) 244, 657
AoxI GGCC 5 cut(s) 293, 458, 629, 775, 1066
ApeKI GCWGC 5 cut(s) 308, 345, 953, 1091, 1187
ApoI RAATTY 3 cut(s) 522, 710, 988
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 653, 1066
AsuC2I CCSGG 1 cut(s) 783
AsuHPI GGTGA 3 cut(s) 449, 650, 676
AvaI CYCGRG 2 cut(s) 244, 657
AvaII GGWCC 1 cut(s) 653
AxyI CCTNAGG 1 cut(s) 924
BbsI GAAGAC 3 cut(s) 63, 213, 755
BbvI GCAGC 5 cut(s) 320, 357, 965, 1103, 1174
BccI CCATC 5 cut(s) 541, 613, 661, 833, 856
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 636
BciVI GTATCC 1 cut(s) 837
BclI TGATCA 3 cut(s) 67, 730, 1144
BcnI CCSGG 1 cut(s) 783
BcoDI GTCTC 2 cut(s) 247, 691
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 3 cut(s) 324, 489, 1173
BfuI GTATCC 1 cut(s) 837
BisI GCNGC 6 cut(s) 28, 309, 346, 954, 1092, 1188
BlsI GCNGC 6 cut(s) 29, 310, 347, 955, 1093, 1189
Bme1390I CCNGG 2 cut(s) 636, 783
Bme18I GGWCC 1 cut(s) 653
BmeT110I CYCGRG 2 cut(s) 244, 657
BmgT120I GGNCC 2 cut(s) 653, 1066
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 2 cut(s) 636, 783
BpiI GAAGAC 3 cut(s) 63, 213, 755
BpmI CTGGAG 2 cut(s) 491, 618
Bpu10I CCTNAGC 1 cut(s) 972
BpuMI CCSGG 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 656
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 434
Bse1I ACTGG 5 cut(s) 318, 439, 444, 778, 1046
Bse21I CCTNAGG 1 cut(s) 924
BseBI CCWGG 1 cut(s) 636
BseDI CCNNGG 1 cut(s) 656
BseGI GGATG 1 cut(s) 624
BseLI CCNNNNNNNGG 2 cut(s) 256, 434
BseMII CTCAG 4 cut(s) 50, 345, 699, 915
BseNI ACTGG 5 cut(s) 318, 439, 444, 778, 1046
BseRI GAGGAG 2 cut(s) 488, 491
BseXI GCAGC 5 cut(s) 320, 357, 965, 1103, 1174
BshFI GGCC 5 cut(s) 295, 460, 631, 777, 1068
BsiHKCI CYCGRG 2 cut(s) 244, 657
BsiSI CCGG 1 cut(s) 782
BslI CCNNNNNNNGG 2 cut(s) 256, 434
BsmAI GTCTC 2 cut(s) 247, 691
BsmI GAATGC 2 cut(s) 973, 1111
BsnI GGCC 5 cut(s) 295, 460, 631, 777, 1068
Bso31I GGTCTC 1 cut(s) 247
BsoBI CYCGRG 2 cut(s) 244, 657
Bsp1407I TGTACA 2 cut(s) 85, 736
BspACI CCGC 4 cut(s) 28, 194, 289, 498
BspANI GGCC 5 cut(s) 295, 460, 631, 777, 1068
BspCNI CTCAG 4 cut(s) 49, 344, 698, 916
BspHI TCATGA 2 cut(s) 144, 754
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 2 cut(s) 324, 370
BspTNI GGTCTC 1 cut(s) 247
BsrBI CCGCTC 2 cut(s) 289, 500
BsrGI TGTACA 2 cut(s) 85, 736
BsrI ACTGG 5 cut(s) 318, 439, 444, 778, 1046
BssECI CCNNGG 1 cut(s) 656
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 4 cut(s) 410, 515, 679, 1042
BstACI GRCGYC 1 cut(s) 303
BstAUI TGTACA 2 cut(s) 85, 736
BstC8I GCNNGC 3 cut(s) 155, 779, 795
BstDEI CTNAG 5 cut(s) 36, 331, 685, 924, 972
BstF5I GGATG 1 cut(s) 624
BstHHI GCGC 1 cut(s) 350
BstMAI GTCTC 2 cut(s) 247, 691
BstMWI GCNNNNNNNGC 4 cut(s) 27, 381, 803, 1184
BstNI CCWGG 1 cut(s) 636
BstNSI RCATGY 2 cut(s) 161, 704
BstSCI CCNGG 2 cut(s) 634, 781
BstSFI CTRYAG 3 cut(s) 324, 489, 1173
BstV1I GCAGC 5 cut(s) 320, 357, 965, 1103, 1174
BstV2I GAAGAC 3 cut(s) 63, 213, 755
BstX2I RGATCY 2 cut(s) 316, 362
BstYI RGATCY 2 cut(s) 316, 362
Bsu36I CCTNAGG 1 cut(s) 924
BsuI GTATCC 1 cut(s) 837
BsuRI GGCC 5 cut(s) 295, 460, 631, 777, 1068
BtsCI GGATG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 311, 520
Cac8I GCNNGC 3 cut(s) 155, 779, 795
CciI TCATGA 2 cut(s) 144, 754
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 2 cut(s) 653, 1066
CseI GACGC 1 cut(s) 292
Csp6I GTAC 6 cut(s) 86, 265, 397, 564, 737, 1043
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviQI GTAC 6 cut(s) 86, 265, 397, 564, 737, 1043
DdeI CTNAG 5 cut(s) 36, 331, 685, 924, 972
Eco31I GGTCTC 1 cut(s) 247
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 653
Eco57I CTGAAG 2 cut(s) 815, 1131
Eco81I CCTNAGG 1 cut(s) 924
Eco88I CYCGRG 2 cut(s) 244, 657
EcoRII CCWGG 1 cut(s) 634
EcoRV GATATC 1 cut(s) 115
FauI CCCGC 1 cut(s) 201
FauNDI CATATG 1 cut(s) 419
FbaI TGATCA 3 cut(s) 67, 730, 1144
FblI GTMKAC 2 cut(s) 276, 579
Fnu4HI GCNGC 6 cut(s) 28, 309, 346, 954, 1092, 1188
FokI GGATG 1 cut(s) 631
Fsp4HI GCNGC 6 cut(s) 28, 309, 346, 954, 1092, 1188
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 349
GluI GCNGC 6 cut(s) 28, 309, 346, 954, 1092, 1188
GsuI CTGGAG 2 cut(s) 491, 618
HaeIII GGCC 5 cut(s) 295, 460, 631, 777, 1068
HapII CCGG 1 cut(s) 782
HgaI GACGC 1 cut(s) 292
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 2 cut(s) 277, 859
HindII GTYRAC 2 cut(s) 277, 859
HindIII AAGCTT 1 cut(s) 883
HinfI GANTC 6 cut(s) 329, 337, 440, 494, 625, 683
HpaII CCGG 1 cut(s) 782
HphI GGTGA 3 cut(s) 449, 650, 676
Hpy166II GTNNAC 4 cut(s) 277, 580, 682, 859
Hpy188I TCNGA 4 cut(s) 39, 72, 259, 918
Hpy188III TCNNGA 8 cut(s) 136, 145, 219, 244, 470, 606, 659, 755
Hpy8I GTNNAC 4 cut(s) 277, 580, 682, 859
Hpy99I CGWCG 2 cut(s) 65, 308
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 4 cut(s) 410, 515, 679, 1042
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 381, 803, 1184
HpyF3I CTNAG 5 cut(s) 36, 331, 685, 924, 972
Hsp92I GRCGYC 1 cut(s) 303
HspAI GCGC 1 cut(s) 348
Ksp22I TGATCA 3 cut(s) 67, 730, 1144
LmnI GCTCC 3 cut(s) 490, 505, 529
Lsp1109I GCAGC 5 cut(s) 320, 357, 965, 1103, 1174
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 1036
MbiI CCGCTC 2 cut(s) 289, 500
MboII GAAGA 6 cut(s) 16, 68, 218, 755, 843, 989
MfeI CAATTG 1 cut(s) 89
MflI RGATCY 2 cut(s) 316, 362
MlyI GAGTC 4 cut(s) 323, 331, 503, 677
MmeI TCCRAC 1 cut(s) 674
MseI TTAA 2 cut(s) 897, 1013
MslI CAYNNNNRTG 3 cut(s) 738, 966, 1104
MspI CCGG 1 cut(s) 782
MspR9I CCNGG 2 cut(s) 636, 783
MunI CAATTG 1 cut(s) 89
Mva1269I GAATGC 2 cut(s) 973, 1111
MvaI CCWGG 1 cut(s) 636
MwoI GCNNNNNNNGC 4 cut(s) 27, 381, 803, 1184
NciI CCSGG 1 cut(s) 783
NdeI CATATG 1 cut(s) 419
NlaIV GGNNCC 1 cut(s) 531
NspI RCATGY 2 cut(s) 161, 704
PaeR7I CTCGAG 1 cut(s) 244
PagI TCATGA 2 cut(s) 144, 754
PciI ACATGT 1 cut(s) 700
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 2 cut(s) 973, 1111
PfeI GAWTC 2 cut(s) 440, 625
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 6 cut(s) 29, 310, 347, 955, 1093, 1189
PleI GAGTC 4 cut(s) 323, 331, 502, 677
PpsI GAGTC 4 cut(s) 323, 331, 502, 677
PscI ACATGT 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 634
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 2 cut(s) 653, 1066
PsuI RGATCY 2 cut(s) 316, 362
RsaI GTAC 6 cut(s) 87, 266, 398, 565, 738, 1044
RsaNI GTAC 6 cut(s) 86, 265, 397, 564, 737, 1043
RseI CAYNNNNRTG 3 cut(s) 738, 966, 1104
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 897, 1013
SatI GCNGC 6 cut(s) 28, 309, 346, 954, 1092, 1188
Sau96I GGNCC 2 cut(s) 653, 1066
SchI GAGTC 4 cut(s) 323, 331, 503, 677
ScrFI CCNGG 2 cut(s) 636, 783
SfcI CTRYAG 3 cut(s) 324, 489, 1173
Sfr274I CTCGAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 738, 966, 1104
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SsiI CCGC 4 cut(s) 28, 194, 289, 498
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 634, 781
TaaI ACNGT 4 cut(s) 410, 515, 679, 1042
TaqI TCGA 4 cut(s) 220, 245, 276, 1050
TatI WGTACW 3 cut(s) 85, 396, 736
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 2 cut(s) 440, 625
Tru1I TTAA 2 cut(s) 897, 1013
Tru9I TTAA 2 cut(s) 897, 1013
TscAI CASTG 2 cut(s) 318, 520
TseI GCWGC 5 cut(s) 308, 345, 953, 1091, 1187
TspDTI ATGAA 5 cut(s) 17, 161, 734, 743, 755
TspRI CASTG 2 cut(s) 318, 520
Van91I CCANNNNNTGG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 653
XapI RAATTY 3 cut(s) 522, 710, 988
XceI RCATGY 2 cut(s) 161, 704
XhoI CTCGAG 1 cut(s) 244
XmiI GTMKAC 2 cut(s) 276, 579
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.