Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012585

Physical Location & Seq

Genomic Coordinates Reverse (-)

8591154 .. 8591588

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATGACGAACAAAAAGAAGCAGGAGCAAGATGAGAAACCCTACATTCTGCAGCTGCCAAACCATATCATAGTGGAAATTTTTTACAAAATACCAATCAAAACACTTGTGAAATGCCTGTTTGTGTGTAAATCCTGGCGCCGTTTGTTTTCAAACCAACAATTTACCAAAGACCTGTTTTTGAAAACACCAACCTACCTTTTGGTCATTGACTCCACGAAGCACCACTTCTTGGTCGACTGGGATAATGCCTCGAGCCCAAAAGATGTTGCATTGAAGGTTTCCGAAGACCTAACTCATAGCCGGAATTTTGTGGGTGTATGCAATGGCTTGCTTTGCCATTACCAAGATTTTGAGCGGGAACTTATCAGTTTTTACATATCCAATCCCATTACCGGTGAGTCTGTACCTCGCATTACCTATCGTGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

144

Amino Acids

16.93

Weight (kDa)

8.87

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	16 - 57	1.3e-09	F-box domain
F-box-like	PF12937	16 - 61	1.7e-08	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40010
rosa_chinensis	RchiOBHm_Chr4g0409251 RchiOBHm_Chr6g0300741
rosa_laevigata	RLG00000008583 RLG00000011306
rosa_multiflora	Rmu_sc0001569.1_g000004 Rmu_sc0006723.1_g000005 Rmu_sc0032596.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353720 Rroxscaffold_7G00167460
rosa_rugosa	Rorug04G0091500 Rorug04G0091500
rosa_samantha	Rh4AG154900 Rh4BG152500 Rh4BG175800 Rh4CG163900 Rh4DG147700 Rh6AG411600
rosa_wichuraiana	Rw4G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	237
AciI	CCGC	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	78, 307
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	232, 395
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	3 cut(s)	153, 184, 277
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	52, 55
ApoI	RAATTY	2 cut(s)	78, 307
AsiGI	ACCGGT	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	42, 64
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	136
BfaI	CTAG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	2 cut(s)	53, 56
BlsI	GCNGC	2 cut(s)	54, 57
Bme1390I	CCNGG	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 395
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	232, 395
BseMI	GCAATG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	42, 64
BshNI	GGYRCC	1 cut(s)	138
BshTI	ACCGGT	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	304, 396
BslI	CCNNNNNNNGG	2 cut(s)	232, 395
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	140
BspMAI	CTGCAG	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	395
BssNI	GRCGYC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	332
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	42, 64
BstV2I	GAAGAC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	407
CspAI	ACCGGT	1 cut(s)	395
CviJI	RGCY	4 cut(s)	55, 258, 303, 330
CviKI_1	RGCY	4 cut(s)	55, 258, 303, 330
CviQI	GTAC	1 cut(s)	407
DinI	GGCGCC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	140
EheI	GGCGCC	1 cut(s)	140
FaiI	YATR	5 cut(s)	66, 71, 300, 322, 380
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FauI	CCCGC	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	53, 56
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	2 cut(s)	53, 56
FspBI	CTAG	1 cut(s)	433
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	53, 56
HaeII	RGCGCY	1 cut(s)	142
HapII	CCGG	2 cut(s)	304, 396
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	212, 401
HpaII	CCGG	2 cut(s)	304, 396
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	52, 272, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	139
HspAI	GCGC	1 cut(s)	139
KasI	GGCGCC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	8, 121, 131, 148, 188, 226, 317, 409
Lsp1109I	GCAGC	2 cut(s)	42, 64
MaeI	CTAG	1 cut(s)	433
MbiI	CCGCTC	1 cut(s)	358
MboII	GAAGA	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	3 cut(s)	78, 161, 307
Mly113I	GGCGCC	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	206, 410
MnlI	CCTC	2 cut(s)	262, 420
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	304, 396
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	336
NarI	GGCGCC	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	253
PflMI	CCANNNNNTGG	1 cut(s)	232
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	54, 57
PleI	GAGTC	2 cut(s)	206, 409
PluTI	GGCGCC	1 cut(s)	142
PpsI	GAGTC	2 cut(s)	206, 409
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	140
PspXI	VCTCGAGB	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SalI	GTCGAC	1 cut(s)	236
SatI	GCNGC	2 cut(s)	53, 56
SchI	GAGTC	2 cut(s)	206, 410
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	8 cut(s)	57, 177, 197, 201, 282, 294, 412, 422
SfcI	CTRYAG	1 cut(s)	50
SfoI	GGCGCC	1 cut(s)	140
Sfr274I	CTCGAG	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	3 cut(s)	78, 161, 307
SsiI	CCGC	1 cut(s)	358
SspDI	GGCGCC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	433
StyD4I	CCNGG	1 cut(s)	134
TaqI	TCGA	2 cut(s)	237, 254
TasI	AATT	3 cut(s)	78, 161, 307
TseI	GCWGC	2 cut(s)	52, 55
Van91I	CCANNNNNTGG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	78, 307
XhoI	CTCGAG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.