Rh6AG411600

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012585
Physical Location & Seq
Forward (+)
60828775 .. 60831463
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG411600.1

Sequence Viewer

Length: 615 bp
ATGTCGTTTGCTCAGAAGGTGATGGTTTTGACGGTTGGCTCCGGGAGTTGGAGAAGCATTTGGTACCCTGGCTACCATTTTGAGAAAGAAAATGGGATTTATGTAAATGGATATCTCCATTGGATTGGCCAGTGTGGTAAGGGTTCTTTGGTGATACATTCGTTTAACCTTGAAAGTGAGAGTTTTGAGCAGTTACCAATGCCACCTTGTTGTTTTGATCCCCATAAAGCTCAGTTGAACCTTGGAGTCTTTAACGGCTGCCTTTCTATAACTGTTCGCTCGAGATATTATATCAGGATTTGGGTGACGAAGAATTATGGTGTTAAGGAGTACTCTTGGACCAGAGAGGTTGACATTAGAGAAATAGTGGGTGGTCTTGTAAAACGTAGTTGTGATTATCCTACTCGTGTTCTAGAATACACAAAGGAGAGGCAAGTCTTGGTGTTAGATAATAGGTTGCAGAGTTATAGTACTCCAAACGAGGGCTTCGTGAAGAATGAGGTTGATGGGATAGAAAATATTCATGATGCTGCATATGTCCATATTCAAAGCTTTGTTCTGCTAGCGCTTAAAGATCTCAATCAGGGGTTCGAGCTTATATGTTCAAAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

204

Amino Acids

23.49

Weight (kDa)

6.99

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 4 - 112 1.2e-11 F-box associated beta propeller domain
FBA_1 PF07734 8 - 150 7.1e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 63
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 127
AfaI GTAC 3 cut(s) 65, 332, 472
AfeI AGCGCT 1 cut(s) 567
AfiI CCNNNNNNNGG 2 cut(s) 48, 482
AgsI TTSAA 4 cut(s) 173, 238, 548, 606
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 3 cut(s) 230, 552, 595
AluI AGCT 3 cut(s) 230, 552, 595
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 280
Aor51HI AGCGCT 1 cut(s) 567
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 258, 530
Asp700I GAANNNNTTC 1 cut(s) 519
Asp718I GGTACC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 568
AspS9I GGNCC 1 cut(s) 339
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 3 cut(s) 31, 163, 316
AsuNHI GCTAGC 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 339
BaeI ACNNNNGTAYC 2 cut(s) 146, 179
BalI TGGCCA 1 cut(s) 129
BanI GGYRCC 1 cut(s) 63
BauI CACGAG 1 cut(s) 405
BbvI GCAGC 2 cut(s) 245, 517
BccI CCATC 2 cut(s) 16, 500
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 69
BcnI CCSGG 1 cut(s) 43
BfaI CTAG 2 cut(s) 413, 563
BfoI RGCGCY 1 cut(s) 569
BglII AGATCT 1 cut(s) 574
BisI GCNGC 2 cut(s) 259, 531
BlsI GCNGC 2 cut(s) 260, 532
BmcAI AGTACT 2 cut(s) 332, 472
Bme1390I CCNGG 2 cut(s) 43, 69
Bme18I GGWCC 1 cut(s) 339
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 2 cut(s) 40, 65
BmrFI CCNGG 2 cut(s) 43, 69
BmsI GCATC 1 cut(s) 517
BmtI GCTAGC 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 579
BsaJI CCNNGG 2 cut(s) 67, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 482
Bse1I ACTGG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 67, 241
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 2 cut(s) 48, 482
BseMII CTCAG 2 cut(s) 26, 245
BseNI ACTGG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 245, 517
BshFI GGCC 1 cut(s) 129
BshNI GGYRCC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 2 cut(s) 48, 482
BsnI GGCC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 280
Bsp143I GATC 2 cut(s) 217, 574
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 2 cut(s) 25, 244
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 40, 65
BspOI GCTAGC 1 cut(s) 566
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 67, 241
BssMI GATC 2 cut(s) 217, 574
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 34, 274
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 2 cut(s) 12, 231
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 2 cut(s) 220, 577
BstMBI GATC 2 cut(s) 217, 574
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 2 cut(s) 41, 67
BstV1I GCAGC 2 cut(s) 245, 517
BstX2I RGATCY 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 125
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 564
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 568
Cfr13I GGNCC 1 cut(s) 339
Csp6I GTAC 3 cut(s) 64, 331, 471
CviAII CATG 1 cut(s) 524
CviJI RGCY 8 cut(s) 39, 72, 129, 230, 258, 486, 552, 595
CviKI_1 RGCY 8 cut(s) 39, 72, 129, 230, 258, 486, 552, 595
CviQI GTAC 3 cut(s) 64, 331, 471
DdeI CTNAG 2 cut(s) 12, 231
DpnI GATC 2 cut(s) 219, 576
DpnII GATC 2 cut(s) 217, 574
EaeI YGGCCR 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 241
Eco32I GATATC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 339
Eco47III AGCGCT 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 67
EcoRV GATATC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 527
FatI CATG 1 cut(s) 523
FauNDI CATATG 1 cut(s) 535
Fnu4HI GCNGC 2 cut(s) 259, 531
Fsp4HI GCNGC 2 cut(s) 259, 531
FspBI CTAG 2 cut(s) 413, 563
GlaI GCGC 1 cut(s) 567
GluI GCNGC 2 cut(s) 259, 531
HaeII RGCGCY 1 cut(s) 569
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 42
HhaI GCGC 1 cut(s) 568
Hin1II CATG 1 cut(s) 527
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 550
HinfI GANTC 1 cut(s) 246
HpaII CCGG 1 cut(s) 42
HphI GGTGA 3 cut(s) 31, 163, 316
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 5 cut(s) 282, 295, 413, 490, 524
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 34, 274
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 2 cut(s) 460, 533
HpyF3I CTNAG 2 cut(s) 12, 231
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 1 cut(s) 527
HspAI GCGC 1 cut(s) 566
KpnI GGTACC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 217, 574
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 7 cut(s) 54, 55, 81, 143, 280, 355, 569
Lsp1109I GCAGC 2 cut(s) 245, 517
LweI GCATC 1 cut(s) 517
MaeI CTAG 2 cut(s) 413, 563
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 192, 304
MalI GATC 2 cut(s) 219, 576
MboI GATC 2 cut(s) 217, 574
MboII GAAGA 2 cut(s) 322, 505
MflI RGATCY 1 cut(s) 574
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 1 cut(s) 313
MluNI TGGCCA 1 cut(s) 129
MlyI GAGTC 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 4 cut(s) 340, 423, 475, 493
Mox20I TGGCCA 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 519
MscI TGGCCA 1 cut(s) 129
MseI TTAA 4 cut(s) 165, 252, 324, 570
Msp20I TGGCCA 1 cut(s) 129
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 2 cut(s) 43, 69
MvaI CCWGG 1 cut(s) 69
NciI CCSGG 1 cut(s) 43
NdeI CATATG 1 cut(s) 535
NdeII GATC 2 cut(s) 217, 574
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 1 cut(s) 527
NlaIV GGNNCC 2 cut(s) 40, 65
NmuCI GTSAC 1 cut(s) 304
PaeR7I CTCGAG 1 cut(s) 280
PagI TCATGA 1 cut(s) 523
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 519
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 2 cut(s) 260, 532
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 40, 65
PspPI GGNCC 1 cut(s) 339
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 3 cut(s) 65, 332, 472
RsaNI GTAC 3 cut(s) 64, 331, 471
SaqAI TTAA 4 cut(s) 165, 252, 324, 570
SatI GCNGC 2 cut(s) 259, 531
Sau3AI GATC 2 cut(s) 217, 574
Sau96I GGNCC 1 cut(s) 339
ScaI AGTACT 2 cut(s) 332, 472
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 43, 69
SfaNI GCATC 1 cut(s) 517
Sfr274I CTCGAG 1 cut(s) 280
SinI GGWCC 1 cut(s) 339
SlaI CTCGAG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 1 cut(s) 313
SspI AATATT 1 cut(s) 520
SspMI CTAG 2 cut(s) 413, 563
StyD4I CCNGG 2 cut(s) 41, 67
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 34, 274
TaiI ACGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 281, 591
TasI AATT 1 cut(s) 313
TatI WGTACW 2 cut(s) 330, 470
Tru1I TTAA 4 cut(s) 165, 252, 324, 570
Tru9I TTAA 4 cut(s) 165, 252, 324, 570
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 258, 530
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 512
TspRI CASTG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 412
XhoI CTCGAG 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 519
XspI CTAG 2 cut(s) 413, 563
ZrmI AGTACT 2 cut(s) 332, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.