Rw4G012640

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
29738439 .. 29743422
4984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012640.1

Sequence Viewer

Length: 1836 bp
ATGAAGAATACCGAACTATGCCATAGCCGCCGACCTCAGAAGCAACATGAGAAGGAAGACGACGATGATCAGAAACCCTACCTTGTACAATTGCCAGACCATATAATTGTCGATATCTCCTGCAAAATCCCAATCAAGACCCTCATGAAATGCAGGCATGTCTGCAAATCTTTGCGATCTTTGTTCGCAGACCCGCAATTTACCGAAGAACTATTCTCTCGAACACGCCCTTGCCATTTGGTCTCGAGCCTCAATTCGGATAGGTACTTCTTGGTCGACTTCAACGAGCGGAGGCCAAACGGCGTCGCAGCACTGGATCTTTCTATAGACTCAGCGACTCCTAGCAGCGCAATCATCGTGGGATCTTGCAAGGGCATGGTCTGCTTATACAAGATGTACTGCCCTTACGGTGTTTACATATGCAATCCAATGACTGGTGATTCCAGTTTCCTTTATTGGCCTTTATCTCTAGAGGAGGAGTTAACTCCTGTACAGTCCACTCCTACAAGACACATTGAGGAAATTTTGGAGCCATCTTTTTGTGGATTTGGGTTCGGATATAGTACCATAAATGGTGTCTACAAAATTGTTCTTATTGCTTATTCAAGAAAAATGAGGATGGGGATTCGGCCTTCAGGTGAGATTGCGTATGGACCTCGGGAGGTGATGGTTTTGACTGTGGACTCAGGGGGTTGGAGACATGTTGGGGAATTTGATATGAACAATTTTGATCATGTACATGGAGTTTATATTCATGACTGTCTTCATTGGACTGGCCTACCGGTAAAGGGTCCTCGTTTGATATATGCATTTGATGTTGGAAGTGAGTGTTTCCGAGAGCTACCAGTACCTCGTTGGACTTCTTTGGAGAGCCAAATGACTAGATTCAACCTTGGAATCTTGAATGATTGCCTCTCTATAACTGTTTGTTGGAGAGCTAGTATCCATGTTTGGGTGATGAAGCATTACGGTGTTGAGAACTCTTGGACCAAAGAGCTTGACATTAGTGTGGAATATGGTCCGTCGTCGTTTGGTGGTTACGCACAAATTTTGAGTTTTTCACCAGAATGGCAAGTCCTGTTGTGGCAGGGTAGGTTGCAGGCTCATACTGCTGGAAGTGAGGGCTTTGTTGGGGTTCAGGTTGATGGGATACCATCTTCGGTTGACAAAGCCTATCCCCATGTTCCAAGCTTTATTTCACTTAAAGATGTTATCAGGTGTCAGCACCCTGAGGGGCAAGGAAATGTGCAAACCACTGCAGTAGATCATGGGAATGCTAAGGAAGATAAACAGAATTTGCAATCTAATGCTCATGGATTAAATCAAGGGAATGTGCAATCTGTAACTGTACCAGTAGATCAACAGCAACAGGGCCAACTGAATGTGCAATCCAATGCAGCAGATCATGGGAATGCTGAAGCAGATAAAGGGAATGTGCAATTTAATGCTGATCAATTAGATCAAGGGAATTTGCAATCTATAGCTGTAACAATTACCCAAGAAAGACAGGAGAATAGAGCACCCATGAAGGCAAAAACCACACATGAAGTTCAACCAATTAATGCAAGCCTCTGCATCCCAACCATTTTATGCATCACCACCCAAGCCAACACAGCCATCTGTTGTGCAGCTATGAACTGCAAACCAGTTCATTCATCCCACAACTGCGATAAAGATGAAGACCAAGTCCCCTGCAAAGAGGAAGAGTGCTCCAGCAGAGAAGTAACTGAGTCCCCTGCTAAGATGAAGCATTTTGGGTGTAATTTCAGATATTTCAAAGCATTGGGCTTTTGTTCACTGTATAACAAATCATTTGTATCGGAACTTGGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

611

Amino Acids

68.39

Weight (kDa)

5.97

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 68 1.5e-06 F-box domain
FBA_3 PF08268 112 - 332 2.9e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AccBSI CCGCTC 1 cut(s) 289
AccI GTMKAC 2 cut(s) 276, 579
AciI CCGC 3 cut(s) 28, 194, 289
AclWI GGATC 2 cut(s) 324, 370
AcsI RAATTY 5 cut(s) 522, 710, 1047, 1294, 1468
AcuI CTGAAG 2 cut(s) 618, 1437
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 8 cut(s) 87, 266, 398, 492, 565, 738, 849, 1350
AfiI CCNNNNNNNGG 4 cut(s) 256, 434, 788, 952
AflIII ACRYGT 1 cut(s) 700
AgeI ACCGGT 1 cut(s) 781
AgsI TTSAA 6 cut(s) 283, 606, 889, 904, 1553, 1777
AjuI GAANNNNNNNTTGG 2 cut(s) 1180, 1212
AluBI AGCT 6 cut(s) 841, 938, 997, 1191, 1484, 1631
AluI AGCT 6 cut(s) 841, 938, 997, 1191, 1484, 1631
Alw21I GWGCWC 2 cut(s) 1522, 1712
Alw26I GTCTC 2 cut(s) 247, 691
AlwI GGATC 2 cut(s) 324, 370
Ama87I CYCGRG 2 cut(s) 244, 657
AoxI GGCC 5 cut(s) 293, 458, 629, 775, 1372
ApeKI GCWGC 4 cut(s) 308, 345, 1397, 1628
ApoI RAATTY 5 cut(s) 522, 710, 1047, 1294, 1468
AseI ATTAAT 1 cut(s) 1560
AsiGI ACCGGT 1 cut(s) 781
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 5 cut(s) 653, 791, 987, 1019, 1372
AsuHPI GGTGA 6 cut(s) 449, 650, 676, 967, 1053, 1588
AvaI CYCGRG 2 cut(s) 244, 657
AvaII GGWCC 4 cut(s) 653, 791, 987, 1019
AxyI CCTNAGG 1 cut(s) 1230
BbsI GAAGAC 3 cut(s) 63, 755, 1686
Bbv12I GWGCWC 2 cut(s) 1522, 1712
BbvI GCAGC 4 cut(s) 320, 357, 1409, 1640
BccI CCATC 6 cut(s) 541, 613, 661, 1139, 1162, 1625
BceAI ACGGC 1 cut(s) 316
BciVI GTATCC 2 cut(s) 953, 1143
BclI TGATCA 3 cut(s) 67, 730, 1450
BcoDI GTCTC 2 cut(s) 247, 691
BfaI CTAG 4 cut(s) 342, 470, 882, 939
BfmI CTRYAG 3 cut(s) 324, 1257, 1479
BfuI GTATCC 2 cut(s) 953, 1143
BisI GCNGC 5 cut(s) 28, 309, 346, 1398, 1629
BlsI GCNGC 5 cut(s) 29, 310, 347, 1399, 1630
Bme18I GGWCC 4 cut(s) 653, 791, 987, 1019
BmeT110I CYCGRG 2 cut(s) 244, 657
BmgT120I GGNCC 5 cut(s) 653, 791, 987, 1019, 1372
BmiI GGNNCC 2 cut(s) 531, 792
BmsI GCATC 2 cut(s) 1584, 1602
BpiI GAAGAC 3 cut(s) 63, 755, 1686
BpmI CTGGAG 1 cut(s) 1696
Bpu10I CCTNAGC 1 cut(s) 1278
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 656, 892
BsaWI WCCGGW 1 cut(s) 781
BsaXI ACNNNNNCTCC 2 cut(s) 925, 955
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 434, 788, 952
Bse118I RCCGGY 1 cut(s) 781
Bse1I ACTGG 7 cut(s) 318, 439, 444, 778, 845, 1352, 1646
Bse21I CCTNAGG 1 cut(s) 1230
BseDI CCNNGG 2 cut(s) 656, 892
BseGI GGATG 3 cut(s) 624, 1575, 1655
BseLI CCNNNNNNNGG 4 cut(s) 256, 434, 788, 952
BseMII CTCAG 5 cut(s) 50, 345, 699, 1221, 1719
BseNI ACTGG 7 cut(s) 318, 439, 444, 778, 845, 1352, 1646
BseRI GAGGAG 2 cut(s) 488, 491
BseXI GCAGC 4 cut(s) 320, 357, 1409, 1640
BsgI GTGCAG 1 cut(s) 1647
BshFI GGCC 5 cut(s) 295, 460, 631, 777, 1374
BshTI ACCGGT 1 cut(s) 781
BsiHKAI GWGCWC 2 cut(s) 1522, 1712
BsiHKCI CYCGRG 2 cut(s) 244, 657
BsiSI CCGG 1 cut(s) 782
BslFI GGGAC 2 cut(s) 1673, 1717
BslI CCNNNNNNNGG 4 cut(s) 256, 434, 788, 952
BsmAI GTCTC 2 cut(s) 247, 691
BsmFI GGGAC 2 cut(s) 1673, 1717
BsmI GAATGC 2 cut(s) 1279, 1417
BsnI GGCC 5 cut(s) 295, 460, 631, 777, 1374
Bso31I GGTCTC 1 cut(s) 247
BsoBI CYCGRG 2 cut(s) 244, 657
Bsp1286I GDGCHC 2 cut(s) 1522, 1712
Bsp1407I TGTACA 3 cut(s) 85, 490, 736
BspACI CCGC 3 cut(s) 28, 194, 289
BspANI GGCC 5 cut(s) 295, 460, 631, 777, 1374
BspCNI CTCAG 5 cut(s) 49, 344, 698, 1222, 1720
BspHI TCATGA 2 cut(s) 144, 754
BspLI GGNNCC 2 cut(s) 531, 792
BspMAI CTGCAG 1 cut(s) 1261
BspPI GGATC 2 cut(s) 324, 370
BspTNI GGTCTC 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 781
BsrGI TGTACA 3 cut(s) 85, 490, 736
BsrI ACTGG 7 cut(s) 318, 439, 444, 778, 845, 1352, 1646
BssAI RCCGGY 1 cut(s) 781
BssECI CCNNGG 2 cut(s) 656, 892
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 892
Bst4CI ACNGT 8 cut(s) 410, 495, 679, 761, 925, 971, 1348, 1800
Bst6I CTCTTC 1 cut(s) 1698
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 381
BstAUI TGTACA 3 cut(s) 85, 490, 736
BstC8I GCNNGC 3 cut(s) 155, 1101, 1567
BstDEI CTNAG 7 cut(s) 36, 331, 685, 1230, 1278, 1728, 1740
BstF5I GGATG 3 cut(s) 624, 1575, 1655
BstHHI GCGC 1 cut(s) 350
BstMAI GTCTC 2 cut(s) 247, 691
BstMWI GCNNNNNNNGC 4 cut(s) 27, 381, 1109, 1613
BstNSI RCATGY 2 cut(s) 161, 704
BstSFI CTRYAG 3 cut(s) 324, 1257, 1479
BstV1I GCAGC 4 cut(s) 320, 357, 1409, 1640
BstV2I GAAGAC 3 cut(s) 63, 755, 1686
BstX2I RGATCY 2 cut(s) 316, 362
BstYI RGATCY 2 cut(s) 316, 362
Bsu36I CCTNAGG 1 cut(s) 1230
BsuI GTATCC 2 cut(s) 953, 1143
BsuRI GGCC 5 cut(s) 295, 460, 631, 777, 1374
BtsCI GGATG 3 cut(s) 624, 1575, 1655
BtsI GCAGTG 1 cut(s) 1254
BtsIMutI CAGTG 3 cut(s) 311, 1254, 1796
Cac8I GCNNGC 3 cut(s) 155, 1101, 1567
CciI TCATGA 2 cut(s) 144, 754
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 1 cut(s) 781
Cfr13I GGNCC 5 cut(s) 653, 791, 987, 1019, 1372
CseI GACGC 1 cut(s) 292
Csp6I GTAC 8 cut(s) 86, 265, 397, 491, 564, 737, 848, 1349
CspAI ACCGGT 1 cut(s) 781
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviQI GTAC 8 cut(s) 86, 265, 397, 491, 564, 737, 848, 1349
DdeI CTNAG 7 cut(s) 36, 331, 685, 1230, 1278, 1728, 1740
Eam1104I CTCTTC 1 cut(s) 1698
EarI CTCTTC 1 cut(s) 1698
Eco130I CCWWGG 1 cut(s) 892
Eco31I GGTCTC 1 cut(s) 247
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 4 cut(s) 653, 791, 987, 1019
Eco57I CTGAAG 2 cut(s) 618, 1437
Eco81I CCTNAGG 1 cut(s) 1230
Eco88I CYCGRG 2 cut(s) 244, 657
EcoO109I RGGNCCY 1 cut(s) 791
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 892
EcoT22I ATGCAT 2 cut(s) 811, 1595
ErhI CCWWGG 1 cut(s) 892
FaqI GGGAC 2 cut(s) 1673, 1717
FauI CCCGC 1 cut(s) 201
FauNDI CATATG 1 cut(s) 419
FbaI TGATCA 3 cut(s) 67, 730, 1450
FblI GTMKAC 2 cut(s) 276, 579
Fnu4HI GCNGC 5 cut(s) 28, 309, 346, 1398, 1629
FokI GGATG 3 cut(s) 631, 1562, 1642
Fsp4HI GCNGC 5 cut(s) 28, 309, 346, 1398, 1629
FspBI CTAG 4 cut(s) 342, 470, 882, 939
GlaI GCGC 1 cut(s) 349
GluI GCNGC 5 cut(s) 28, 309, 346, 1398, 1629
GsuI CTGGAG 1 cut(s) 1696
HaeIII GGCC 5 cut(s) 295, 460, 631, 777, 1374
HapII CCGG 1 cut(s) 782
HgaI GACGC 1 cut(s) 292
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 3 cut(s) 277, 483, 1165
HindII GTYRAC 3 cut(s) 277, 483, 1165
HindIII AAGCTT 1 cut(s) 1189
HinfI GANTC 8 cut(s) 329, 337, 440, 625, 683, 885, 897, 1730
HpaI GTTAAC 1 cut(s) 483
HpaII CCGG 1 cut(s) 782
HphI GGTGA 6 cut(s) 449, 650, 676, 967, 1053, 1588
Hpy166II GTNNAC 8 cut(s) 277, 415, 483, 498, 580, 682, 1165, 1796
Hpy188I TCNGA 7 cut(s) 39, 72, 259, 557, 836, 1769, 1822
Hpy188III TCNNGA 9 cut(s) 136, 145, 219, 244, 470, 606, 659, 755, 901
Hpy8I GTNNAC 8 cut(s) 277, 415, 483, 498, 580, 682, 1165, 1796
Hpy99I CGWCG 4 cut(s) 65, 308, 1027, 1030
HpyAV CCTTC 3 cut(s) 46, 642, 1522
HpyCH4III ACNGT 8 cut(s) 410, 495, 679, 761, 925, 971, 1348, 1800
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 381, 1109, 1613
HpyF3I CTNAG 7 cut(s) 36, 331, 685, 1230, 1278, 1728, 1740
Hsp92I GRCGYC 1 cut(s) 303
HspAI GCGC 1 cut(s) 348
Ksp22I TGATCA 3 cut(s) 67, 730, 1450
KspAI GTTAAC 1 cut(s) 483
LmnI GCTCC 2 cut(s) 529, 1715
Lsp1109I GCAGC 4 cut(s) 320, 357, 1409, 1640
LweI GCATC 2 cut(s) 1584, 1602
MaeI CTAG 4 cut(s) 342, 470, 882, 939
MaeIII GTNAC 5 cut(s) 1037, 1342, 1486, 1723, 1829
MbiI CCGCTC 1 cut(s) 289
MboII GAAGA 8 cut(s) 16, 68, 218, 755, 1149, 1295, 1691, 1715
MfeI CAATTG 1 cut(s) 89
MflI RGATCY 2 cut(s) 316, 362
MhlI GDGCHC 2 cut(s) 1522, 1712
MlyI GAGTC 4 cut(s) 323, 331, 677, 1739
MmeI TCCRAC 4 cut(s) 674, 799, 836, 911
Mph1103I ATGCAT 2 cut(s) 811, 1595
MseI TTAA 5 cut(s) 482, 1203, 1319, 1443, 1560
MslI CAYNNNNRTG 6 cut(s) 738, 969, 1007, 1066, 1272, 1410
MspI CCGG 1 cut(s) 782
MunI CAATTG 1 cut(s) 89
Mva1269I GAATGC 2 cut(s) 1279, 1417
MwoI GCNNNNNNNGC 4 cut(s) 27, 381, 1109, 1613
NdeI CATATG 1 cut(s) 419
NlaIV GGNNCC 2 cut(s) 531, 792
NsiI ATGCAT 2 cut(s) 811, 1595
NspI RCATGY 2 cut(s) 161, 704
PaeR7I CTCGAG 1 cut(s) 244
PagI TCATGA 2 cut(s) 144, 754
PciI ACATGT 1 cut(s) 700
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 2 cut(s) 1279, 1417
PfeI GAWTC 4 cut(s) 440, 625, 885, 897
PflFI GACNNNGTC 1 cut(s) 1685
PflMI CCANNNNNTGG 1 cut(s) 434
PinAI ACCGGT 1 cut(s) 781
PkrI GCNGC 5 cut(s) 29, 310, 347, 1399, 1630
PleI GAGTC 4 cut(s) 323, 331, 677, 1738
PpsI GAGTC 4 cut(s) 323, 331, 677, 1738
PpuMI RGGWCCY 1 cut(s) 791
PscI ACATGT 1 cut(s) 700
PshBI ATTAAT 1 cut(s) 1560
Psp5II RGGWCCY 1 cut(s) 791
PspN4I GGNNCC 2 cut(s) 531, 792
PspPI GGNCC 5 cut(s) 653, 791, 987, 1019, 1372
PspPPI RGGWCCY 1 cut(s) 791
PstI CTGCAG 1 cut(s) 1261
PsuI RGATCY 2 cut(s) 316, 362
PsyI GACNNNGTC 1 cut(s) 1685
RsaI GTAC 8 cut(s) 87, 266, 398, 492, 565, 738, 849, 1350
RsaNI GTAC 8 cut(s) 86, 265, 397, 491, 564, 737, 848, 1349
RseI CAYNNNNRTG 6 cut(s) 738, 969, 1007, 1066, 1272, 1410
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 5 cut(s) 482, 1203, 1319, 1443, 1560
SatI GCNGC 5 cut(s) 28, 309, 346, 1398, 1629
Sau96I GGNCC 5 cut(s) 653, 791, 987, 1019, 1372
SchI GAGTC 4 cut(s) 323, 331, 677, 1739
SduI GDGCHC 2 cut(s) 1522, 1712
SfaNI GCATC 2 cut(s) 1584, 1602
SfcI CTRYAG 3 cut(s) 324, 1257, 1479
Sfr274I CTCGAG 1 cut(s) 244
SinI GGWCC 4 cut(s) 653, 791, 987, 1019
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 6 cut(s) 738, 969, 1007, 1066, 1272, 1410
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SsiI CCGC 3 cut(s) 28, 194, 289
SspMI CTAG 4 cut(s) 342, 470, 882, 939
StyI CCWWGG 1 cut(s) 892
TaaI ACNGT 8 cut(s) 410, 495, 679, 761, 925, 971, 1348, 1800
TaqI TCGA 4 cut(s) 111, 220, 245, 276
TatI WGTACW 4 cut(s) 85, 396, 490, 736
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 4 cut(s) 440, 625, 885, 897
Tru1I TTAA 5 cut(s) 482, 1203, 1319, 1443, 1560
Tru9I TTAA 5 cut(s) 482, 1203, 1319, 1443, 1560
TscAI CASTG 3 cut(s) 318, 1261, 1803
TseI GCWGC 4 cut(s) 308, 345, 1397, 1628
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 3 cut(s) 318, 1261, 1803
Tth111I GACNNNGTC 1 cut(s) 1685
Van91I CCANNNNNTGG 1 cut(s) 434
VpaK11BI GGWCC 4 cut(s) 653, 791, 987, 1019
VspI ATTAAT 1 cut(s) 1560
XapI RAATTY 5 cut(s) 522, 710, 1047, 1294, 1468
XbaI TCTAGA 1 cut(s) 469
XceI RCATGY 2 cut(s) 161, 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 852
XhoI CTCGAG 1 cut(s) 244
XmiI GTMKAC 2 cut(s) 276, 579
XspI CTAG 4 cut(s) 342, 470, 882, 939
Zsp2I ATGCAT 2 cut(s) 811, 1595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.