Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0012585

Physical Location & Seq

Genomic Coordinates Forward (+)

29576674 .. 29587461

Gene Structure 10788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG147700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGAATACCGAACTATGCCATAGCCGCCGACCTCAGAAGCAACATGAGAAGGAAGACGACGATGATCAGAAACCCTACCTTGTACAATTGCCAGACCATATAATTGCCGATATCTTGTGCAAAATCCCAATTAAGACCCTCATGAAATGCAGGCATGTCTGCAAATCTTTGCGATCTTTGTTCGCAGACCCGCAATTTACCGAAGACCTATTCTCTCGAACGCGCCCTTGCCATTTGGTCTCGAGCCTCAATTCGGATAGGTACTTCTTGGTCGACTTCAACGAGCGGAGGCCAAACGGCGTCGCAGCACTGGATCTTTCTATAGACTCAGCGACTCCTAGCAGTGCAATCATGGTGGGATCTTGCAAGGGCTTGGTCTGCCTATACAAGATGTACTGCCCTTACGGTGTTTACATATGCAATCCAATGACTGGTGATTCCAGTTTCCTTTATTGGCCTTTATCTCTAGAGGAGGAGTTAACTCCTGTAGAGTCCACTCCTACAAGACACAGTGAGGAAATTTTGGAGCCATCTTTTTGTGGATTCGGGTTGGGATATAGTACCATAAGTGATGTATACAAAATTGTTCTAATTGCTTATTCAAGAAAAATGAGGATGGGGATTCGGCCTCCAGGTGAGATTGCGTATGGACCTCGGGAGGTGATGGTTTTGACTGTGGACTCAGAGGGTTGGAGACATGTTGGGGAATTTGATATGAACAATTTTGATCATGTACATGGAGTTTATATTCATGATTCTCTTCATTGGACTGGCCTGCCGGGTAGGTTGCAGGCTCATACTGCTGGAAGTGAGGGCTTTGTTGGGGTTCAGGTTGATGGGATACCATCTTCGGTTGACAAAGCCTATCCCCATGTTCCAAGCTTTATTTCACTTAAGGATGTTATCAGGAGTCAGCACCCTGAGCTCCGGCCACCGGGCAAGGTCCTCCAGGCGATTTTTGAGTCCTCTGAGAAGATCCTGCGTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

330

Amino Acids

37.22

Weight (kDa)

6.16

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	29 - 67	3.2e-06	F-box-like
F-box	PF00646	30 - 68	2.4e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40010
rosa_chinensis	RchiOBHm_Chr4g0409251 RchiOBHm_Chr6g0300741
rosa_laevigata	RLG00000008583 RLG00000011306
rosa_multiflora	Rmu_sc0001569.1_g000004 Rmu_sc0006723.1_g000005 Rmu_sc0032596.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353720 Rroxscaffold_7G00167460
rosa_rugosa	Rorug04G0091500 Rorug04G0091500
rosa_samantha	Rh4AG154900 Rh4BG152500 Rh4BG175800 Rh4CG163900 Rh4DG147700 Rh6AG411600
rosa_wichuraiana	Rw4G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	289
AccI	GTMKAC	2 cut(s)	276, 579
AccII	CGCG	1 cut(s)	226
AciI	CCGC	3 cut(s)	28, 194, 289
AclWI	GGATC	3 cut(s)	324, 370, 973
AcoI	YGGCCR	1 cut(s)	932
AcsI	RAATTY	2 cut(s)	522, 710
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	5 cut(s)	87, 266, 398, 565, 738
AfiI	CCNNNNNNNGG	3 cut(s)	256, 434, 937
AflII	CTTAAG	1 cut(s)	896
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	2 cut(s)	283, 606
AjnI	CCWGG	2 cut(s)	634, 951
AjuI	GAANNNNNNNTTGG	2 cut(s)	874, 906
AluBI	AGCT	2 cut(s)	885, 928
AluI	AGCT	2 cut(s)	885, 928
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	2 cut(s)	247, 691
AlwI	GGATC	3 cut(s)	324, 370, 973
Ama87I	CYCGRG	2 cut(s)	244, 657
AoxI	GGCC	5 cut(s)	293, 458, 629, 775, 932
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	2 cut(s)	522, 710
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	653, 946
AsuC2I	CCSGG	2 cut(s)	783, 939
AsuHPI	GGTGA	3 cut(s)	449, 650, 676
AvaI	CYCGRG	2 cut(s)	244, 657
AvaII	GGWCC	2 cut(s)	653, 946
BanII	GRGCYC	1 cut(s)	930
BbsI	GAAGAC	2 cut(s)	63, 213
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	5 cut(s)	541, 613, 661, 833, 856
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	2 cut(s)	636, 953
BciVI	GTATCC	1 cut(s)	837
BclI	TGATCA	2 cut(s)	67, 730
BcnI	CCSGG	2 cut(s)	783, 939
BcoDI	GTCTC	2 cut(s)	247, 691
BfaI	CTAG	2 cut(s)	342, 470
BfmI	CTRYAG	2 cut(s)	324, 489
BfrI	CTTAAG	1 cut(s)	896
BfuI	GTATCC	1 cut(s)	837
BisI	GCNGC	2 cut(s)	28, 309
BlsI	GCNGC	2 cut(s)	29, 310
Bme1390I	CCNGG	4 cut(s)	636, 783, 939, 953
Bme18I	GGWCC	2 cut(s)	653, 946
BmeT110I	CYCGRG	2 cut(s)	244, 657
BmgT120I	GGNCC	2 cut(s)	653, 946
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	4 cut(s)	636, 783, 939, 953
BpiI	GAAGAC	2 cut(s)	63, 213
BpmI	CTGGAG	2 cut(s)	618, 935
Bpu10I	CCTNAGC	1 cut(s)	924
BpuMI	CCSGG	2 cut(s)	783, 939
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 434, 937
Bse1I	ACTGG	4 cut(s)	318, 439, 444, 778
BseBI	CCWGG	2 cut(s)	636, 953
BseDI	CCNNGG	1 cut(s)	656
BseGI	GGATG	2 cut(s)	624, 907
BseLI	CCNNNNNNNGG	3 cut(s)	256, 434, 937
BseMII	CTCAG	5 cut(s)	50, 345, 699, 915, 963
BseNI	ACTGG	4 cut(s)	318, 439, 444, 778
BseRI	GAGGAG	2 cut(s)	488, 491
BseXI	GCAGC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	5 cut(s)	295, 460, 631, 777, 934
BsiHKAI	GWGCWC	1 cut(s)	930
BsiHKCI	CYCGRG	2 cut(s)	244, 657
BsiSI	CCGG	3 cut(s)	782, 931, 938
BslI	CCNNNNNNNGG	3 cut(s)	256, 434, 937
BsmAI	GTCTC	2 cut(s)	247, 691
BsnI	GGCC	5 cut(s)	295, 460, 631, 777, 934
Bso31I	GGTCTC	1 cut(s)	247
BsoBI	CYCGRG	2 cut(s)	244, 657
Bsp1286I	GDGCHC	1 cut(s)	930
Bsp1407I	TGTACA	2 cut(s)	85, 736
Bsp143I	GATC	6 cut(s)	67, 176, 316, 362, 730, 978
BspACI	CCGC	3 cut(s)	28, 194, 289
BspANI	GGCC	5 cut(s)	295, 460, 631, 777, 934
BspCNI	CTCAG	5 cut(s)	49, 344, 698, 916, 964
BspFNI	CGCG	1 cut(s)	226
BspHI	TCATGA	2 cut(s)	144, 754
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	3 cut(s)	324, 370, 973
BspTI	CTTAAG	1 cut(s)	896
BspTNI	GGTCTC	1 cut(s)	247
BsrBI	CCGCTC	1 cut(s)	289
BsrGI	TGTACA	2 cut(s)	85, 736
BsrI	ACTGG	4 cut(s)	318, 439, 444, 778
BssECI	CCNNGG	1 cut(s)	656
BssMI	GATC	6 cut(s)	67, 176, 316, 362, 730, 978
BssNAI	GTATAC	1 cut(s)	580
BssNI	GRCGYC	1 cut(s)	303
Bst1107I	GTATAC	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	636, 953
Bst4CI	ACNGT	3 cut(s)	410, 515, 679
Bst6I	CTCTTC	1 cut(s)	768
BstACI	GRCGYC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	896
BstAUI	TGTACA	2 cut(s)	85, 736
BstC8I	GCNNGC	4 cut(s)	155, 779, 795, 987
BstDEI	CTNAG	5 cut(s)	36, 331, 685, 924, 972
BstF5I	GGATG	2 cut(s)	624, 907
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	6 cut(s)	70, 179, 319, 365, 733, 981
BstMAI	GTCTC	2 cut(s)	247, 691
BstMBI	GATC	6 cut(s)	67, 176, 316, 362, 730, 978
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 381, 803, 925
BstNI	CCWGG	2 cut(s)	636, 953
BstNSI	RCATGY	2 cut(s)	161, 704
BstSCI	CCNGG	4 cut(s)	634, 781, 937, 951
BstSFI	CTRYAG	2 cut(s)	324, 489
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	2 cut(s)	63, 213
BstX2I	RGATCY	3 cut(s)	316, 362, 978
BstYI	RGATCY	3 cut(s)	316, 362, 978
BstZ17I	GTATAC	1 cut(s)	580
BsuI	GTATCC	1 cut(s)	837
BsuRI	GGCC	5 cut(s)	295, 460, 631, 777, 934
BtsCI	GGATG	2 cut(s)	624, 907
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	3 cut(s)	311, 352, 520
Cac8I	GCNNGC	4 cut(s)	155, 779, 795, 987
CciI	TCATGA	2 cut(s)	144, 754
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	653, 946
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	5 cut(s)	86, 265, 397, 564, 737
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	9 cut(s)	47, 145, 158, 355, 701, 734, 740, 755, 875
CviQI	GTAC	5 cut(s)	86, 265, 397, 564, 737
DdeI	CTNAG	5 cut(s)	36, 331, 685, 924, 972
DpnI	GATC	6 cut(s)	69, 178, 318, 364, 732, 980
DpnII	GATC	6 cut(s)	67, 176, 316, 362, 730, 978
EaeI	YGGCCR	1 cut(s)	932
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Ecl136II	GAGCTC	1 cut(s)	928
Eco24I	GRGCYC	1 cut(s)	930
Eco31I	GGTCTC	1 cut(s)	247
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	653, 946
Eco53kI	GAGCTC	1 cut(s)	928
Eco88I	CYCGRG	2 cut(s)	244, 657
EcoICRI	GAGCTC	1 cut(s)	928
EcoO109I	RGGNCCY	1 cut(s)	946
EcoRII	CCWGG	2 cut(s)	634, 951
EcoRV	GATATC	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	930
FaeI	CATG	9 cut(s)	50, 148, 161, 358, 704, 737, 743, 758, 878
FatI	CATG	9 cut(s)	46, 144, 157, 354, 700, 733, 739, 754, 874
FauI	CCCGC	1 cut(s)	201
FauNDI	CATATG	1 cut(s)	419
FbaI	TGATCA	2 cut(s)	67, 730
FblI	GTMKAC	2 cut(s)	276, 579
Fnu4HI	GCNGC	2 cut(s)	28, 309
FokI	GGATG	2 cut(s)	631, 914
FriOI	GRGCYC	1 cut(s)	930
Fsp4HI	GCNGC	2 cut(s)	28, 309
FspBI	CTAG	2 cut(s)	342, 470
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	28, 309
GsuI	CTGGAG	2 cut(s)	618, 935
HaeIII	GGCC	5 cut(s)	295, 460, 631, 777, 934
HapII	CCGG	3 cut(s)	782, 931, 938
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	9 cut(s)	50, 148, 161, 358, 704, 737, 743, 758, 878
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	3 cut(s)	277, 483, 859
HindII	GTYRAC	3 cut(s)	277, 483, 859
HindIII	AAGCTT	1 cut(s)	883
HpaI	GTTAAC	1 cut(s)	483
HpaII	CCGG	3 cut(s)	782, 931, 938
HphI	GGTGA	3 cut(s)	449, 650, 676
Hpy166II	GTNNAC	7 cut(s)	277, 415, 483, 498, 580, 682, 859
Hpy188I	TCNGA	5 cut(s)	39, 72, 259, 688, 973
Hpy188III	TCNNGA	8 cut(s)	145, 219, 244, 470, 606, 659, 755, 910
Hpy8I	GTNNAC	7 cut(s)	277, 415, 483, 498, 580, 682, 859
Hpy99I	CGWCG	2 cut(s)	65, 308
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	410, 515, 679
HpyCH4V	TGCA	7 cut(s)	123, 153, 165, 350, 369, 423, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 381, 803, 925
HpyF3I	CTNAG	5 cut(s)	36, 331, 685, 924, 972
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	9 cut(s)	50, 148, 161, 358, 704, 737, 743, 758, 878
HspAI	GCGC	1 cut(s)	226
Ksp22I	TGATCA	2 cut(s)	67, 730
KspAI	GTTAAC	1 cut(s)	483
Kzo9I	GATC	6 cut(s)	67, 176, 316, 362, 730, 978
LmnI	GCTCC	2 cut(s)	529, 933
Lsp1109I	GCAGC	1 cut(s)	320
MaeI	CTAG	2 cut(s)	342, 470
MalI	GATC	6 cut(s)	69, 178, 318, 364, 732, 980
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	6 cut(s)	67, 176, 316, 362, 730, 978
MboII	GAAGA	6 cut(s)	16, 68, 218, 755, 843, 988
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	3 cut(s)	316, 362, 978
MhlI	GDGCHC	1 cut(s)	930
MlyI	GAGTC	6 cut(s)	323, 331, 503, 677, 922, 974
MmeI	TCCRAC	1 cut(s)	674
MseI	TTAA	3 cut(s)	135, 482, 897
MslI	CAYNNNNRTG	1 cut(s)	738
MspCI	CTTAAG	1 cut(s)	896
MspI	CCGG	3 cut(s)	782, 931, 938
MspR9I	CCNGG	4 cut(s)	636, 783, 939, 953
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	2 cut(s)	636, 953
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	4 cut(s)	27, 381, 803, 925
NciI	CCSGG	2 cut(s)	783, 939
NdeI	CATATG	1 cut(s)	419
NdeII	GATC	6 cut(s)	67, 176, 316, 362, 730, 978
NlaIII	CATG	9 cut(s)	50, 148, 161, 358, 704, 737, 743, 758, 878
NlaIV	GGNNCC	1 cut(s)	531
NspI	RCATGY	2 cut(s)	161, 704
PaeR7I	CTCGAG	1 cut(s)	244
PagI	TCATGA	2 cut(s)	144, 754
PciI	ACATGT	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PfeI	GAWTC	4 cut(s)	440, 546, 625, 758
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	29, 310
PleI	GAGTC	6 cut(s)	323, 331, 502, 677, 921, 973
PpsI	GAGTC	6 cut(s)	323, 331, 502, 677, 921, 973
PpuMI	RGGWCCY	1 cut(s)	946
PscI	ACATGT	1 cut(s)	700
Psp124BI	GAGCTC	1 cut(s)	930
Psp5II	RGGWCCY	1 cut(s)	946
Psp6I	CCWGG	2 cut(s)	634, 951
PspGI	CCWGG	2 cut(s)	634, 951
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	2 cut(s)	653, 946
PspPPI	RGGWCCY	1 cut(s)	946
PsuI	RGATCY	3 cut(s)	316, 362, 978
RsaI	GTAC	5 cut(s)	87, 266, 398, 565, 738
RsaNI	GTAC	5 cut(s)	86, 265, 397, 564, 737
RseI	CAYNNNNRTG	1 cut(s)	738
SacI	GAGCTC	1 cut(s)	930
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	135, 482, 897
SatI	GCNGC	2 cut(s)	28, 309
Sau3AI	GATC	6 cut(s)	67, 176, 316, 362, 730, 978
Sau96I	GGNCC	2 cut(s)	653, 946
SchI	GAGTC	6 cut(s)	323, 331, 503, 677, 922, 974
ScrFI	CCNGG	4 cut(s)	636, 783, 939, 953
SduI	GDGCHC	1 cut(s)	930
SfcI	CTRYAG	2 cut(s)	324, 489
Sfr274I	CTCGAG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	653, 946
SlaI	CTCGAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	2 cut(s)	244, 896
SmoI	CTYRAG	2 cut(s)	244, 896
SsiI	CCGC	3 cut(s)	28, 194, 289
SspMI	CTAG	2 cut(s)	342, 470
SstI	GAGCTC	1 cut(s)	930
StyD4I	CCNGG	4 cut(s)	634, 781, 937, 951
TaaI	ACNGT	3 cut(s)	410, 515, 679
TaqI	TCGA	3 cut(s)	220, 245, 276
TatI	WGTACW	3 cut(s)	85, 396, 736
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	4 cut(s)	440, 546, 625, 758
Tru1I	TTAA	3 cut(s)	135, 482, 897
Tru9I	TTAA	3 cut(s)	135, 482, 897
TscAI	CASTG	3 cut(s)	318, 352, 520
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	5 cut(s)	17, 161, 734, 743, 755
TspRI	CASTG	3 cut(s)	318, 352, 520
Van91I	CCANNNNNTGG	1 cut(s)	434
Vha464I	CTTAAG	1 cut(s)	896
VpaK11BI	GGWCC	2 cut(s)	653, 946
XapI	RAATTY	2 cut(s)	522, 710
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	2 cut(s)	161, 704
XhoI	CTCGAG	1 cut(s)	244
XmiI	GTMKAC	2 cut(s)	276, 579
XspI	CTAG	2 cut(s)	342, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.