Rh4CG163900

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012585
Physical Location & Seq
Forward (+)
36107626 .. 36125692
18067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG163900.1

Sequence Viewer

Length: 1434 bp
ATGGTGGGATCTTGCAAGGGCTTGGTCTGCTTATACAAGATGTACTGCCCTTACGGTTTTTACATATGCAATCCAATGACTGGTGAGTCTTCATCTCTTCCACCTCCTATTAGGGAAGTTGATTCCAGTTTCCTTTATTGGCCTTTATCTCTAGAGGAGGAGTTAACTCCTGTAGAGTCCACTCCTACAAGACACAGTGAGGAAATTTTGGAGCCATCTTTTTGTGGATTTGGGTTGGGATATAGTACCATAAATAGTGTCTACAAAATTGTTCTTATTGCTTATTCAAGAAAAATGAGGATGGGAATTCGGCCTCCAGGTGAGATTGCATATGGACCTCGGGAGGTGATGGTTTTGACTGTGGACTCAGGGGGTTGGAGACATGTTGGGGAATTTGATATGAACAATTTTGATCATGTACATGGAGTTTATATTCATGACTGTCTTCATTGGACTGGCCTTCCGGTAAAGGGTCCTCGTTTGATATATGCATTTGATGTTGGAAGTGAGTGTTTCCGAGAGCTACCAGTACCTCGTTGGACTTCTTTGGAGAGCCAAATGACTAGATTCAACCTTGGAATCTTGAATGATTGCCTCTCTATAACTGTTTGTTGGAGAGCTAGTATCCATGTTTGGGTGATGAAGCATTACGGTGTCGAGGACTCTTGGACCAAAGAGCTTGACATTAGTGTGGAATATGGTCCATCGTCGTTTGGTGGTTACGCACAAATTTTGAGTTTTTCACCAGAATGGCAAGTCCTGTTGTGGCAGGGTAGGTTGCAGGCTCGTACTGCTGGAAGTGAGGGCTTTGTTGGGGTTCAGGTTGATGGGATACCATCTTCGGTTGACAAAGCCTATCCCCATGTTCCAAGCTTTATTTCACTTAAAGATGTTATCAGGTGTCAGAACCCTGAGGGGCAAGGAAATGTGCAAACCACTGCAGTAGATCATGGGAATGCTAAGGAAGATAAACAGAATTTGCAATCTAATGCTCATGGATTAAATCAAGGGAATGTGCAATCTGGCCAACTGAATGTGCAATCCAATGCAGCAGATCATGGGAATGCTGAAGCAGATAAAGGGAATGTGCAATCTAATGCTGATCAATTAGATCAAGGGAATTTGCAATCTATAGCTGTAACAATTACCCAAGAAAGACAGGCCGGCGTCGCACCCAACATTGTCACCTATAACCTCATCTTCCAGACCTCTCTAGACTACTGGAAACCCGATATGGTTATGGAGCATTACAAGCAACTCATCAACAACGCGCCGTTTAATCCTTCTCTGACGACGAAACGGATTTTTCTCAAAGGGTTGGTGGACAATTGCAAGGTGGAGAGGGCGGTGGAGCTGAAAGAGGAGATGGTTGATGTGAAGGGTTTCGAGTCGGACCCAGTTGTCTTCGTAGTCGTATCGCTCTCCTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

477

Amino Acids

53.17

Weight (kDa)

5.28

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 4 - 226 2.9e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 85, 1400
AccB7I CCANNNNNTGG 1 cut(s) 80
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 1271
AciI CCGC 1 cut(s) 1346
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 1024
AcsI RAATTY 6 cut(s) 204, 306, 392, 729, 976, 1120
AcuI CTGAAG 1 cut(s) 1089
AcyI GRCGYC 1 cut(s) 1167
AfaI GTAC 5 cut(s) 44, 247, 420, 531, 790
AfiI CCNNNNNNNGG 3 cut(s) 80, 470, 634
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 3 cut(s) 288, 571, 586
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 862, 894
AluBI AGCT 6 cut(s) 523, 620, 679, 873, 1136, 1354
AluI AGCT 6 cut(s) 523, 620, 679, 873, 1136, 1354
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 5 cut(s) 140, 311, 457, 1024, 1161
ApeKI GCWGC 1 cut(s) 1049
ApoI RAATTY 6 cut(s) 204, 306, 392, 729, 976, 1120
Asp700I GAANNNNTTC 1 cut(s) 1382
AspLEI GCGC 1 cut(s) 1273
AspS9I GGNCC 5 cut(s) 335, 473, 669, 701, 1393
AsuHPI GGTGA 6 cut(s) 95, 332, 358, 649, 735, 1177
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 5 cut(s) 335, 473, 669, 701, 1393
AxyI CCTNAGG 1 cut(s) 912
BalI TGGCCA 1 cut(s) 1026
BbsI GAAGAC 3 cut(s) 81, 437, 1396
BbvI GCAGC 1 cut(s) 1061
BccI CCATC 7 cut(s) 223, 295, 343, 712, 821, 844, 1360
BceAI ACGGC 1 cut(s) 1258
BciT130I CCWGG 1 cut(s) 318
BciVI GTATCC 2 cut(s) 635, 825
BclI TGATCA 2 cut(s) 412, 1102
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 4 cut(s) 152, 564, 621, 1214
BfmI CTRYAG 3 cut(s) 171, 939, 1131
BfuI GTATCC 2 cut(s) 635, 825
BisI GCNGC 1 cut(s) 1050
BlsI GCNGC 1 cut(s) 1051
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 5 cut(s) 335, 473, 669, 701, 1393
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 5 cut(s) 335, 473, 669, 701, 1393
BmiI GGNNCC 3 cut(s) 213, 474, 1395
BmrFI CCNGG 1 cut(s) 318
BmrI ACTGGG 1 cut(s) 1391
BmuI ACTGGG 1 cut(s) 1391
BpiI GAAGAC 3 cut(s) 81, 437, 1396
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 960
BsaHI GRCGYC 1 cut(s) 1167
BsaJI CCNNGG 2 cut(s) 338, 574
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 470, 634
Bse118I RCCGGY 1 cut(s) 1163
Bse1I ACTGG 6 cut(s) 85, 126, 460, 527, 1226, 1397
Bse21I CCTNAGG 1 cut(s) 912
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 338, 574
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 80, 470, 634
BseMII CTCAG 2 cut(s) 381, 903
BseNI ACTGG 6 cut(s) 85, 126, 460, 527, 1226, 1397
BseRI GAGGAG 3 cut(s) 170, 173, 1376
BseXI GCAGC 1 cut(s) 1061
Bsh1236I CGCG 1 cut(s) 1271
BshFI GGCC 5 cut(s) 142, 313, 459, 1026, 1163
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 2 cut(s) 464, 1164
BslI CCNNNNNNNGG 3 cut(s) 80, 470, 634
BsmAI GTCTC 1 cut(s) 373
BsmI GAATGC 2 cut(s) 961, 1069
BsnI GGCC 5 cut(s) 142, 313, 459, 1026, 1163
BsoBI CYCGRG 1 cut(s) 339
Bsp1407I TGTACA 1 cut(s) 418
Bsp143I GATC 6 cut(s) 8, 412, 946, 1054, 1102, 1111
BspACI CCGC 1 cut(s) 1346
BspANI GGCC 5 cut(s) 142, 313, 459, 1026, 1163
BspCNI CTCAG 2 cut(s) 380, 904
BspFNI CGCG 1 cut(s) 1271
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 3 cut(s) 213, 474, 1395
BspMAI CTGCAG 1 cut(s) 943
BspPI GGATC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 1163
BsrGI TGTACA 1 cut(s) 418
BsrI ACTGG 6 cut(s) 85, 126, 460, 527, 1226, 1397
BssAI RCCGGY 1 cut(s) 1163
BssECI CCNNGG 2 cut(s) 338, 574
BssMI GATC 6 cut(s) 8, 412, 946, 1054, 1102, 1111
BssNI GRCGYC 1 cut(s) 1167
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 6 cut(s) 56, 197, 361, 443, 607, 653
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 1167
BstAUI TGTACA 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 783, 1165
BstDEI CTNAG 3 cut(s) 367, 912, 960
BstF5I GGATG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 1271
BstHHI GCGC 1 cut(s) 1273
BstKTI GATC 6 cut(s) 11, 415, 949, 1057, 1105, 1114
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 6 cut(s) 8, 412, 946, 1054, 1102, 1111
BstMWI GCNNNNNNNGC 4 cut(s) 27, 791, 1169, 1252
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 3 cut(s) 171, 939, 1131
BstUI CGCG 1 cut(s) 1271
BstV1I GCAGC 1 cut(s) 1061
BstV2I GAAGAC 3 cut(s) 81, 437, 1396
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Bsu36I CCTNAGG 1 cut(s) 912
BsuI GTATCC 2 cut(s) 635, 825
BsuRI GGCC 5 cut(s) 142, 313, 459, 1026, 1163
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 2 cut(s) 202, 936
Cac8I GCNNGC 2 cut(s) 783, 1165
CciI TCATGA 1 cut(s) 436
CfoI GCGC 1 cut(s) 1273
Cfr10I RCCGGY 1 cut(s) 1163
Cfr13I GGNCC 5 cut(s) 335, 473, 669, 701, 1393
CseI GACGC 1 cut(s) 1156
Csp6I GTAC 5 cut(s) 43, 246, 419, 530, 789
CviAII CATG 9 cut(s) 383, 416, 422, 437, 629, 863, 950, 995, 1058
CviQI GTAC 5 cut(s) 43, 246, 419, 530, 789
DdeI CTNAG 3 cut(s) 367, 912, 960
DpnI GATC 6 cut(s) 10, 414, 948, 1056, 1104, 1113
DpnII GATC 6 cut(s) 8, 412, 946, 1054, 1102, 1111
DrdI GACNNNNNNGTC 2 cut(s) 85, 1400
DseDI GACNNNNNNGTC 2 cut(s) 85, 1400
EaeI YGGCCR 1 cut(s) 1024
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 574
Eco47I GGWCC 5 cut(s) 335, 473, 669, 701, 1393
Eco57I CTGAAG 1 cut(s) 1089
Eco81I CCTNAGG 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 574
EcoT22I ATGCAT 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 9 cut(s) 386, 419, 425, 440, 632, 866, 953, 998, 1061
FatI CATG 9 cut(s) 382, 415, 421, 436, 628, 862, 949, 994, 1057
FauNDI CATATG 2 cut(s) 65, 331
FbaI TGATCA 2 cut(s) 412, 1102
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 1050
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 1050
FspBI CTAG 4 cut(s) 152, 564, 621, 1214
GlaI GCGC 1 cut(s) 1272
GluI GCNGC 1 cut(s) 1050
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 5 cut(s) 142, 313, 459, 1026, 1163
HapII CCGG 2 cut(s) 464, 1164
HgaI GACGC 1 cut(s) 1156
HhaI GCGC 1 cut(s) 1273
Hin1I GRCGYC 1 cut(s) 1167
Hin1II CATG 9 cut(s) 386, 419, 425, 440, 632, 866, 953, 998, 1061
Hin6I GCGC 1 cut(s) 1271
HinP1I GCGC 1 cut(s) 1271
HincII GTYRAC 2 cut(s) 165, 847
HindII GTYRAC 2 cut(s) 165, 847
HindIII AAGCTT 1 cut(s) 871
HinfI GANTC 8 cut(s) 86, 122, 176, 365, 567, 579, 662, 1388
HpaI GTTAAC 1 cut(s) 165
HpaII CCGG 2 cut(s) 464, 1164
HphI GGTGA 6 cut(s) 95, 332, 358, 649, 735, 1177
Hpy166II GTNNAC 6 cut(s) 165, 180, 262, 364, 847, 1324
Hpy188I TCNGA 4 cut(s) 518, 906, 1290, 1393
Hpy188III TCNNGA 7 cut(s) 152, 288, 341, 437, 583, 1204, 1214
Hpy8I GTNNAC 6 cut(s) 165, 180, 262, 364, 847, 1324
Hpy99I CGWCG 3 cut(s) 712, 1172, 1297
HpyAV CCTTC 3 cut(s) 470, 1293, 1372
HpyCH4III ACNGT 6 cut(s) 56, 197, 361, 443, 607, 653
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 791, 1169, 1252
HpyF3I CTNAG 3 cut(s) 367, 912, 960
Hsp92I GRCGYC 1 cut(s) 1167
Hsp92II CATG 9 cut(s) 386, 419, 425, 440, 632, 866, 953, 998, 1061
HspAI GCGC 1 cut(s) 1271
KroI GCCGGC 1 cut(s) 1163
KroNI GCCGGC 1 cut(s) 1165
Ksp22I TGATCA 2 cut(s) 412, 1102
KspAI GTTAAC 1 cut(s) 165
Kzo9I GATC 6 cut(s) 8, 412, 946, 1054, 1102, 1111
LmnI GCTCC 3 cut(s) 211, 1243, 1351
Lsp1109I GCAGC 1 cut(s) 1061
MaeI CTAG 4 cut(s) 152, 564, 621, 1214
MaeIII GTNAC 3 cut(s) 719, 1138, 1183
MalI GATC 6 cut(s) 10, 414, 948, 1056, 1104, 1113
MboI GATC 6 cut(s) 8, 412, 946, 1054, 1102, 1111
MboII GAAGA 7 cut(s) 81, 89, 437, 831, 977, 1192, 1396
MfeI CAATTG 1 cut(s) 1327
MflI RGATCY 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 1026
MluNI TGGCCA 1 cut(s) 1026
MlyI GAGTC 5 cut(s) 95, 185, 359, 656, 1397
MmeI TCCRAC 5 cut(s) 356, 481, 518, 593, 1371
Mox20I TGGCCA 1 cut(s) 1026
Mph1103I ATGCAT 1 cut(s) 493
MroNI GCCGGC 1 cut(s) 1163
MroXI GAANNNNTTC 1 cut(s) 1382
MscI TGGCCA 1 cut(s) 1026
MseI TTAA 4 cut(s) 164, 885, 1001, 1278
MslI CAYNNNNRTG 6 cut(s) 420, 651, 689, 748, 954, 1062
Msp20I TGGCCA 1 cut(s) 1026
MspI CCGG 2 cut(s) 464, 1164
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 1327
Mva1269I GAATGC 2 cut(s) 961, 1069
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 1271
MwoI GCNNNNNNNGC 4 cut(s) 27, 791, 1169, 1252
NaeI GCCGGC 1 cut(s) 1165
NdeI CATATG 2 cut(s) 65, 331
NdeII GATC 6 cut(s) 8, 412, 946, 1054, 1102, 1111
NgoMIV GCCGGC 1 cut(s) 1163
NlaIII CATG 9 cut(s) 386, 419, 425, 440, 632, 866, 953, 998, 1061
NlaIV GGNNCC 3 cut(s) 213, 474, 1395
NmuCI GTSAC 1 cut(s) 1183
NsiI ATGCAT 1 cut(s) 493
NspI RCATGY 1 cut(s) 386
PagI TCATGA 1 cut(s) 436
PciI ACATGT 1 cut(s) 382
PctI GAATGC 2 cut(s) 961, 1069
PdiI GCCGGC 1 cut(s) 1165
PdmI GAANNNNTTC 1 cut(s) 1382
PfeI GAWTC 3 cut(s) 122, 567, 579
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 1 cut(s) 1051
PleI GAGTC 5 cut(s) 94, 184, 359, 656, 1396
PpsI GAGTC 5 cut(s) 94, 184, 359, 656, 1396
PpuMI RGGWCCY 1 cut(s) 473
PscI ACATGT 1 cut(s) 382
Psp5II RGGWCCY 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 3 cut(s) 213, 474, 1395
PspPI GGNCC 5 cut(s) 335, 473, 669, 701, 1393
PspPPI RGGWCCY 1 cut(s) 473
PstI CTGCAG 1 cut(s) 943
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 5 cut(s) 44, 247, 420, 531, 790
RsaNI GTAC 5 cut(s) 43, 246, 419, 530, 789
RseI CAYNNNNRTG 6 cut(s) 420, 651, 689, 748, 954, 1062
SaqAI TTAA 4 cut(s) 164, 885, 1001, 1278
SatI GCNGC 1 cut(s) 1050
Sau3AI GATC 6 cut(s) 8, 412, 946, 1054, 1102, 1111
Sau96I GGNCC 5 cut(s) 335, 473, 669, 701, 1393
SchI GAGTC 5 cut(s) 95, 185, 359, 656, 1397
ScrFI CCNGG 1 cut(s) 318
SfcI CTRYAG 3 cut(s) 171, 939, 1131
SinI GGWCC 5 cut(s) 335, 473, 669, 701, 1393
SmiMI CAYNNNNRTG 6 cut(s) 420, 651, 689, 748, 954, 1062
SsiI CCGC 1 cut(s) 1346
SspMI CTAG 4 cut(s) 152, 564, 621, 1214
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 6 cut(s) 56, 197, 361, 443, 607, 653
TaqI TCGA 2 cut(s) 657, 1386
TatI WGTACW 2 cut(s) 42, 418
TfiI GAWTC 3 cut(s) 122, 567, 579
Tru1I TTAA 4 cut(s) 164, 885, 1001, 1278
Tru9I TTAA 4 cut(s) 164, 885, 1001, 1278
TscAI CASTG 2 cut(s) 202, 943
TseFI GTSAC 1 cut(s) 1183
TseI GCWGC 1 cut(s) 1049
Tsp45I GTSAC 1 cut(s) 1183
TspDTI ATGAA 5 cut(s) 81, 416, 425, 437, 656
TspGWI ACGGA 1 cut(s) 1315
TspRI CASTG 2 cut(s) 202, 943
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 5 cut(s) 335, 473, 669, 701, 1393
XapI RAATTY 6 cut(s) 204, 306, 392, 729, 976, 1120
XbaI TCTAGA 2 cut(s) 151, 1213
XceI RCATGY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 1382
XspI CTAG 4 cut(s) 152, 564, 621, 1214
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.