Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006021

Physical Location & Seq

Genomic Coordinates Forward (+)

160216 .. 163993

Gene Structure 3778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGGATCGTTTCTCAGGAGGCGATCAAGCAATTCCAAGCTTTGATGGATCAAGTTGATGAACCCCTCAAGATAACATTTCAGAATGTGCACCAAGGATATCTAGTTGAGACTTTTGGGCGTTTTCTCAGAGCAAGAGAGTGGAATGTTGTCAAAGCCCATAAAATGTTGATAGATTGTTTAAACTGGAGGGTGCAAAATGAGATTGACAATATATTGGCTAAACCCATACTTCCAATTGAATTGTACAGAGGAGTGCGAGACTCACAGCTCATAGGCCTTTCAGGTTACTCTAGAGAGGGTATGCCAGTCTTTGCTATTGGGGTTGGGTTAAGTACATTTGATAAAGCGTCAGTTCACTACTATGTGCAGTCACACATTCAAATCAATGAATATCGAGATCGTGTTATTTTGCCTTCTGCGTCGAAGAAGTATGGTAAGCCTATTACCACGTGTGTGAAAGTTTTAGATATGACTGGCTTGAAGCTTTCAGCACTAAGCCACATTAAGTTGTTGACAATTATATCAACAGTTGATGATTTGAATTACCCAGAGAAGACAAGTACGTACTACATTGTAAATGTGCCTTACATATTCTCAGCTTGTTGGAAGGTTGTCAAGCCCCTTTTGCAGGAGAGGACAAGGAGAAAAGTACAAGTATTGTCTGGTTGTGGTACAGATGAGTTGTTGAAGATAATGGATTATGAATCTCTTCCTCGTTTCTGTAAAAGAGAAGGTTCTGGATCGTCTCGATCACAGAATGGAAGCGACAATTGCTTCTCCTTGGATCACCATTTTCATCAACAGCTCTACGACTACATCAAGCAGCAATCTTTCATCAATGAATCTGTTCAACCCATCAAGCAGGGTTCTTTTCATGTGGACGTACCTGAGCCTGCTGCAGAAGGAACACAGATTGCCAAAACAATAGAATATGAGTTCAACAAATTTGGTAACGGCAATGGGGTATCTGACTCATTTGGTGACCTTAAAATCAATGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

336

Amino Acids

38.01

Weight (kDa)

7.63

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	8 - 59	2.4e-10	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	89 - 241	1.1e-17	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47730 AT5G47730 AT5G47730 AT5G47730
fragaria_vesca	FvH4_3g00280 FvH4_3g00280 FvH4_3g00280 FvH4_4g17420
malus_domestica	MD05G1362300.v1.1 MD10G1339800.v1.1
prunus_persica	Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1
pyrus_communis	pycom05g32870 pycom10g28960
rosa_chinensis	RchiOBHm_Chr5g0000411
rosa_laevigata	RLG00000030864
rosa_multiflora	Rmu_co8373963.1_g000001 Rmu_sc0003949.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075750
rosa_rugosa	Rorug04G0383400
rosa_samantha	Rh5AG003300 Rh5BG004400 Rh5CG003500 Rh5DG003400
rosa_wichuraiana	Rw5G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	14, 57, 751, 795
AcsI	RAATTY	1 cut(s)	947
AcvI	CACGTG	1 cut(s)	453
AfaI	GTAC	7 cut(s)	248, 337, 565, 569, 654, 676, 888
AfiI	CCNNNNNNNGG	1 cut(s)	631
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	7 cut(s)	242, 383, 484, 544, 691, 854, 943
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	5 cut(s)	41, 271, 487, 602, 808
AluI	AGCT	5 cut(s)	41, 271, 487, 602, 808
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	104, 255, 753
Alw44I	GTGCAC	1 cut(s)	89
AlwI	GGATC	4 cut(s)	14, 57, 751, 795
AoxI	GGCC	1 cut(s)	277
ApaLI	GTGCAC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	826, 899
ApoI	RAATTY	1 cut(s)	947
Asp700I	GAANNNNTTC	2 cut(s)	711, 849
AsuHPI	GGTGA	2 cut(s)	782, 995
BaeGI	GKGCMC	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	838, 886
BccI	CCATC	2 cut(s)	40, 866
BceAI	ACGGC	1 cut(s)	973
BcoDI	GTCTC	3 cut(s)	104, 255, 753
BfaI	CTAG	2 cut(s)	104, 294
BfmI	CTRYAG	1 cut(s)	900
BisI	GCNGC	2 cut(s)	827, 900
BlsI	GCNGC	2 cut(s)	828, 901
BpiI	GAAGAC	1 cut(s)	563
BpmI	CTGGAG	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	53
BsaAI	YACGTR	2 cut(s)	453, 567
BsaJI	CCNNGG	2 cut(s)	94, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	3 cut(s)	191, 308, 481
Bse3DI	GCAATG	1 cut(s)	967
BseDI	CCNNGG	2 cut(s)	94, 783
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMI	GCAATG	1 cut(s)	967
BseMII	CTCAG	4 cut(s)	29, 142, 612, 882
BseNI	ACTGG	3 cut(s)	191, 308, 481
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	838, 886
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	3 cut(s)	104, 255, 753
BsmBI	CGTCTC	1 cut(s)	753
BsnI	GGCC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	7 cut(s)	6, 24, 49, 400, 743, 752, 787
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	4 cut(s)	28, 141, 611, 883
BspMAI	CTGCAG	1 cut(s)	904
BspPI	GGATC	4 cut(s)	14, 57, 751, 795
BsrDI	GCAATG	1 cut(s)	967
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	3 cut(s)	191, 308, 481
BssECI	CCNNGG	2 cut(s)	94, 783
BssMI	GATC	7 cut(s)	6, 24, 49, 400, 743, 752, 787
BssT1I	CCWWGG	2 cut(s)	94, 783
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	717
BstAUI	TGTACA	1 cut(s)	246
BstBAI	YACGTR	2 cut(s)	453, 567
BstC8I	GCNNGC	1 cut(s)	897
BstDEI	CTNAG	5 cut(s)	15, 128, 497, 598, 891
BstEII	GGTNACC	1 cut(s)	983
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstKTI	GATC	7 cut(s)	9, 27, 52, 403, 746, 755, 790
BstMAI	GTCTC	3 cut(s)	104, 255, 753
BstMBI	GATC	7 cut(s)	6, 24, 49, 400, 743, 752, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	628, 774
BstPI	GGTNACC	1 cut(s)	983
BstSFI	CTRYAG	1 cut(s)	900
BstSLI	GKGCMC	1 cut(s)	93
BstSNI	TACGTA	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	838, 886
BstV2I	GAAGAC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	897
CseI	GACGC	2 cut(s)	339, 411
Csp6I	GTAC	7 cut(s)	247, 336, 564, 568, 653, 675, 887
CviAII	CATG	1 cut(s)	878
CviQI	GTAC	7 cut(s)	247, 336, 564, 568, 653, 675, 887
DdeI	CTNAG	5 cut(s)	15, 128, 497, 598, 891
DpnI	GATC	7 cut(s)	8, 26, 51, 402, 745, 754, 789
DpnII	GATC	7 cut(s)	6, 24, 49, 400, 743, 752, 787
DraI	TTTAAA	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco105I	TACGTA	1 cut(s)	567
Eco130I	CCWWGG	2 cut(s)	94, 783
Eco147I	AGGCCT	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	453
Eco91I	GGTNACC	1 cut(s)	983
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoO65I	GGTNACC	1 cut(s)	983
EcoRV	GATATC	1 cut(s)	101
EcoT14I	CCWWGG	2 cut(s)	94, 783
ErhI	CCWWGG	2 cut(s)	94, 783
Esp3I	CGTCTC	1 cut(s)	753
FaeI	CATG	1 cut(s)	881
FatI	CATG	1 cut(s)	877
Fnu4HI	GCNGC	2 cut(s)	827, 900
Fsp4HI	GCNGC	2 cut(s)	827, 900
FspBI	CTAG	2 cut(s)	104, 294
GluI	GCNGC	2 cut(s)	827, 900
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	279
HgaI	GACGC	2 cut(s)	339, 411
Hin1II	CATG	1 cut(s)	881
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	2 cut(s)	39, 485
HinfI	GANTC	4 cut(s)	263, 707, 845, 974
HphI	GGTGA	2 cut(s)	782, 995
Hpy166II	GTNNAC	4 cut(s)	91, 358, 516, 883
Hpy188I	TCNGA	3 cut(s)	84, 131, 973
Hpy188III	TCNNGA	6 cut(s)	17, 70, 294, 398, 741, 750
Hpy8I	GTNNAC	4 cut(s)	91, 358, 516, 883
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	4 cut(s)	426, 604, 728, 899
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	3 cut(s)	452, 566, 885
HpyCH4V	TGCA	5 cut(s)	91, 196, 370, 631, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	628, 774
HpyF3I	CTNAG	5 cut(s)	15, 128, 497, 598, 891
HpySE526I	ACGT	3 cut(s)	452, 566, 885
Hsp92II	CATG	1 cut(s)	881
Kzo9I	GATC	7 cut(s)	6, 24, 49, 400, 743, 752, 787
Lsp1109I	GCAGC	2 cut(s)	838, 886
MaeI	CTAG	2 cut(s)	104, 294
MaeII	ACGT	3 cut(s)	452, 566, 885
MaeIII	GTNAC	5 cut(s)	287, 372, 953, 983, 1001
MalI	GATC	7 cut(s)	8, 26, 51, 402, 745, 754, 789
MboI	GATC	7 cut(s)	6, 24, 49, 400, 743, 752, 787
MboII	GAAGA	4 cut(s)	439, 568, 703, 704
MfeI	CAATTG	2 cut(s)	237, 772
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	7 cut(s)	32, 237, 242, 519, 544, 772, 947
MlyI	GAGTC	2 cut(s)	257, 968
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	7 cut(s)	13, 77, 183, 245, 292, 630, 726
MroXI	GAANNNNTTC	2 cut(s)	711, 849
MseI	TTAA	4 cut(s)	182, 332, 507, 990
MslI	CAYNNNNRTG	2 cut(s)	363, 455
MssI	GTTTAAAC	1 cut(s)	183
MunI	CAATTG	2 cut(s)	237, 772
MwoI	GCNNNNNNNGC	2 cut(s)	628, 774
NdeII	GATC	7 cut(s)	6, 24, 49, 400, 743, 752, 787
NlaIII	CATG	1 cut(s)	881
NmuCI	GTSAC	3 cut(s)	372, 983, 1001
OliI	CACNNNNGTG	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	279
PdmI	GAANNNNTTC	2 cut(s)	711, 849
PfeI	GAWTC	2 cut(s)	707, 845
PkrI	GCNGC	2 cut(s)	828, 901
PleI	GAGTC	2 cut(s)	257, 968
PmaCI	CACGTG	1 cut(s)	453
PmeI	GTTTAAAC	1 cut(s)	183
PmlI	CACGTG	1 cut(s)	453
PpsI	GAGTC	2 cut(s)	257, 968
Ppu21I	YACGTR	2 cut(s)	453, 567
PspCI	CACGTG	1 cut(s)	453
PspEI	GGTNACC	1 cut(s)	983
PstI	CTGCAG	1 cut(s)	904
RsaI	GTAC	7 cut(s)	248, 337, 565, 569, 654, 676, 888
RsaNI	GTAC	7 cut(s)	247, 336, 564, 568, 653, 675, 887
RseI	CAYNNNNRTG	2 cut(s)	363, 455
SaqAI	TTAA	4 cut(s)	182, 332, 507, 990
SatI	GCNGC	2 cut(s)	827, 900
Sau3AI	GATC	7 cut(s)	6, 24, 49, 400, 743, 752, 787
SchI	GAGTC	2 cut(s)	257, 968
SduI	GDGCHC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	900
SmiMI	CAYNNNNRTG	2 cut(s)	363, 455
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SnaBI	TACGTA	1 cut(s)	567
Sse9I	AATT	7 cut(s)	32, 237, 242, 519, 544, 772, 947
SseBI	AGGCCT	1 cut(s)	279
SspMI	CTAG	2 cut(s)	104, 294
StuI	AGGCCT	1 cut(s)	279
StyI	CCWWGG	2 cut(s)	94, 783
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	3 cut(s)	455, 569, 888
TaqI	TCGA	3 cut(s)	397, 425, 751
TasI	AATT	7 cut(s)	32, 237, 242, 519, 544, 772, 947
TatI	WGTACW	3 cut(s)	246, 335, 652
TfiI	GAWTC	2 cut(s)	707, 845
Tru1I	TTAA	4 cut(s)	182, 332, 507, 990
Tru9I	TTAA	4 cut(s)	182, 332, 507, 990
TseFI	GTSAC	3 cut(s)	372, 983, 1001
TseI	GCWGC	2 cut(s)	826, 899
Tsp45I	GTSAC	3 cut(s)	372, 983, 1001
TspDTI	ATGAA	7 cut(s)	75, 405, 720, 788, 826, 858, 866
VneI	GTGCAC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	1 cut(s)	947
XbaI	TCTAGA	1 cut(s)	293
XmnI	GAANNNNTTC	2 cut(s)	711, 849
XspI	CTAG	2 cut(s)	104, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.