Prupe.4G003100_v2.0.a1

transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0006021
Physical Location & Seq
Forward (+)
217376 .. 221491
4116 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G003100.4

Sequence Viewer

Length: 1011 bp
ATGGGGATCGTTTCTCAGGAAGCGATTAAGCAGTTCCAAACTTTGATGGATCAAGTTGATGAGCCACTCAAGAGAACATTTCAGAATGTTCATCAAGGATATCCTCTTGAGACTTTCGGCCGTTTTCTCAAAGCAAGAGAATGGAATGTCGCCAAAGCCCATAAAATGTTGGTAGATTGTTTAAACTGGAGGGTACAAAATGAGATTGACAATATATTGGCCAAACCGATTGTTCCAACTGAATTATACCGGTCAGTACGAGATTCACAGCTCATAGGTCTTTCGGGTTACTCAAGAGAGGGTTTGCCAGTCTTTGCCATTGGTGTTGGGCTAAGTACATTTGACAAGGCATCTGTTCACTACTATGTGCAGTCACACATTCAAATTAATGAATATCGAGATCGTATAATTTTGCCTTCTGCATCGAGGAAGTATGGTAAGCCTATTACCACCTGCGTGAAGGTTTTAGATATGACTGGTTTGAAGCTCTCAGCACTAAGCCAAATTAAGTTATTGACAATTATATCAACAATTGATGATTTGAACTACCCGGAGAAGACAAATACATACTACATTGTAAATGCCCCATATATATTCTCAGCTTGTTGGAAGGTTGTCAAGCCCCTTTTGCAGGAGAGGACAAGGAAAAAAGTGCAGGTGTTGTCTGGTTGTGGTAAGGATGAACTGTTGAAGATAATGGATTATGGATCTCTTCCACATTTTTGTAAAAGAGAAGGTTCGGGATCATCTCGGCATTCACAGAATGGAGCTGAAAATTGCTTCTCCTTGGACCACCACTTTCATCAACAGCTCTGCAACTACATCAAGCAGCAATCTTTGATCAAGCAACCTGTTCACCCAATGAAGCAGGGTTCTTTTCATGTGGATGTACCTGAGCCAGCTGCAGAAGGAACACAGATTGCTAAAACGATAGAATCTGAGTTTAACAAGTTTGGTAATGGGAATGGGCTATCTGACTCTCTAGATGACCTCAAAATCAATGGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

337

Amino Acids

38.01

Weight (kDa)

8.68

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 461, 646
Acc36I ACCTGC 2 cut(s) 461, 646
AclWI GGATC 4 cut(s) 14, 57, 715, 751
AcoI YGGCCR 2 cut(s) 118, 219
AfaI GTAC 4 cut(s) 195, 258, 337, 891
AfiI CCNNNNNNNGG 1 cut(s) 631
AgeI ACCGGT 1 cut(s) 249
AgsI TTSAA 4 cut(s) 383, 484, 544, 691
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 6 cut(s) 271, 487, 602, 770, 811, 902
AluI AGCT 6 cut(s) 271, 487, 602, 770, 811, 902
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 4 cut(s) 14, 57, 715, 751
AoxI GGCC 2 cut(s) 118, 219
ApeKI GCWGC 2 cut(s) 829, 902
AseI ATTAAT 1 cut(s) 387
AsiGI ACCGGT 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 790
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 848
AvaII GGWCC 1 cut(s) 790
BalI TGGCCA 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 563
BbvI GCAGC 2 cut(s) 841, 889
BccI CCATC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 105
BclI TGATCA 1 cut(s) 840
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 983
BfmI CTRYAG 1 cut(s) 903
BfuAI ACCTGC 2 cut(s) 461, 646
BisI GCNGC 2 cut(s) 830, 903
BlsI GCNGC 2 cut(s) 831, 904
Bme1390I CCNGG 1 cut(s) 551
Bme18I GGWCC 1 cut(s) 790
BmgT120I GGNCC 1 cut(s) 790
BmrFI CCNGG 1 cut(s) 551
BmsI GCATC 2 cut(s) 359, 431
BpiI GAAGAC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 208
Bpu10I CCTNAGC 1 cut(s) 894
BpuEI CTTGAG 3 cut(s) 53, 128, 277
BpuMI CCSGG 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 786
BsaWI WCCGGW 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse118I RCCGGY 1 cut(s) 249
Bse1I ACTGG 3 cut(s) 191, 308, 481
BseDI CCNNGG 1 cut(s) 786
BseGI GGATG 2 cut(s) 685, 892
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMII CTCAG 5 cut(s) 29, 504, 612, 885, 930
BseNI ACTGG 3 cut(s) 191, 308, 481
BseX3I CGGCCG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 841, 889
BsgI GTGCAG 2 cut(s) 389, 674
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 2 cut(s) 120, 221
BshTI ACCGGT 1 cut(s) 249
BsiEI CGRYCG 1 cut(s) 121
BsiSI CCGG 2 cut(s) 250, 551
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 2 cut(s) 120, 221
Bsp143I GATC 6 cut(s) 6, 49, 400, 707, 743, 840
BspANI GGCC 2 cut(s) 120, 221
BspCNI CTCAG 5 cut(s) 28, 503, 611, 886, 931
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 2 cut(s) 461, 646
BspPI GGATC 4 cut(s) 14, 57, 715, 751
BsrFI RCCGGY 1 cut(s) 249
BsrI ACTGG 3 cut(s) 191, 308, 481
BssAI RCCGGY 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 786
BssMI GATC 6 cut(s) 6, 49, 400, 707, 743, 840
BssT1I CCWWGG 1 cut(s) 786
Bst4CI ACNGT 1 cut(s) 687
Bst6I CTCTTC 1 cut(s) 717
BstC8I GCNNGC 1 cut(s) 900
BstDEI CTNAG 7 cut(s) 15, 332, 490, 497, 598, 894, 939
BstENI CCTNNNNNAGG 1 cut(s) 629
BstF5I GGATG 2 cut(s) 685, 892
BstKTI GATC 6 cut(s) 9, 52, 403, 710, 746, 843
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 6 cut(s) 6, 49, 400, 707, 743, 840
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 549
BstSFI CTRYAG 1 cut(s) 903
BstV1I GCAGC 2 cut(s) 841, 889
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
BstZI CGGCCG 1 cut(s) 118
BsuRI GGCC 2 cut(s) 120, 221
BtsCI GGATG 2 cut(s) 685, 892
BveI ACCTGC 2 cut(s) 461, 646
Cac8I GCNNGC 1 cut(s) 900
Cfr10I RCCGGY 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 790
Csp6I GTAC 4 cut(s) 194, 257, 336, 890
CspAI ACCGGT 1 cut(s) 249
CviAII CATG 1 cut(s) 881
CviQI GTAC 4 cut(s) 194, 257, 336, 890
DdeI CTNAG 7 cut(s) 15, 332, 490, 497, 598, 894, 939
DpnI GATC 6 cut(s) 8, 51, 402, 709, 745, 842
DpnII GATC 6 cut(s) 6, 49, 400, 707, 743, 840
DraI TTTAAA 1 cut(s) 183
EaeI YGGCCR 2 cut(s) 118, 219
EagI CGGCCG 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
EclXI CGGCCG 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 786
Eco32I GATATC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 790
Eco52I CGGCCG 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 629
EcoRV GATATC 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 786
ErhI CCWWGG 1 cut(s) 786
FaeI CATG 1 cut(s) 884
FatI CATG 1 cut(s) 880
FbaI TGATCA 1 cut(s) 840
Fnu4HI GCNGC 2 cut(s) 830, 903
FokI GGATG 2 cut(s) 692, 899
Fsp4HI GCNGC 2 cut(s) 830, 903
FspBI CTAG 1 cut(s) 983
GluI GCNGC 2 cut(s) 830, 903
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 2 cut(s) 120, 221
HapII CCGG 2 cut(s) 250, 551
Hin1II CATG 1 cut(s) 884
HinfI GANTC 3 cut(s) 263, 935, 977
HpaII CCGG 2 cut(s) 250, 551
HphI GGTGA 1 cut(s) 848
Hpy166II GTNNAC 2 cut(s) 358, 856
Hpy188I TCNGA 3 cut(s) 84, 940, 976
Hpy188III TCNNGA 7 cut(s) 17, 70, 107, 294, 398, 741, 983
Hpy8I GTNNAC 2 cut(s) 358, 856
HpyAV CCTTC 5 cut(s) 426, 454, 604, 728, 902
HpyCH4III ACNGT 1 cut(s) 687
HpyCH4V TGCA 6 cut(s) 370, 422, 631, 655, 816, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 628
HpyF3I CTNAG 7 cut(s) 15, 332, 490, 497, 598, 894, 939
Hsp92II CATG 1 cut(s) 884
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 6 cut(s) 6, 49, 400, 707, 743, 840
LmnI GCTCC 1 cut(s) 767
Lsp1109I GCAGC 2 cut(s) 841, 889
LweI GCATC 2 cut(s) 359, 431
MaeI CTAG 1 cut(s) 983
MaeIII GTNAC 3 cut(s) 287, 372, 1004
MalI GATC 6 cut(s) 8, 51, 402, 709, 745, 842
MboI GATC 6 cut(s) 6, 49, 400, 707, 743, 840
MboII GAAGA 3 cut(s) 568, 703, 704
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 1 cut(s) 707
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 7 cut(s) 242, 384, 408, 504, 519, 531, 775
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 1 cut(s) 971
MmeI TCCRAC 2 cut(s) 260, 587
MnlI CCTC 6 cut(s) 114, 183, 292, 420, 630, 1001
Mox20I TGGCCA 1 cut(s) 221
MscI TGGCCA 1 cut(s) 221
MseI TTAA 5 cut(s) 27, 182, 387, 507, 945
MslI CAYNNNNRTG 3 cut(s) 363, 455, 885
Msp20I TGGCCA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 2 cut(s) 250, 551
MspR9I CCNGG 1 cut(s) 551
MssI GTTTAAAC 1 cut(s) 183
MunI CAATTG 1 cut(s) 531
Mva1269I GAATGC 1 cut(s) 754
MwoI GCNNNNNNNGC 1 cut(s) 628
NciI CCSGG 1 cut(s) 551
NdeII GATC 6 cut(s) 6, 49, 400, 707, 743, 840
NlaIII CATG 1 cut(s) 884
NmeAIII GCCGAG 1 cut(s) 730
NmuCI GTSAC 2 cut(s) 372, 1004
OliI CACNNNNGTG 1 cut(s) 455
PaqCI CACCTGC 2 cut(s) 461, 646
PctI GAATGC 1 cut(s) 754
PfeI GAWTC 2 cut(s) 263, 935
PinAI ACCGGT 1 cut(s) 249
PkrI GCNGC 2 cut(s) 831, 904
PleI GAGTC 1 cut(s) 971
PmeI GTTTAAAC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 971
PshBI ATTAAT 1 cut(s) 387
PspPI GGNCC 1 cut(s) 790
PstI CTGCAG 1 cut(s) 907
PsuI RGATCY 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 4 cut(s) 195, 258, 337, 891
RsaNI GTAC 4 cut(s) 194, 257, 336, 890
RseI CAYNNNNRTG 3 cut(s) 363, 455, 885
SaqAI TTAA 5 cut(s) 27, 182, 387, 507, 945
SatI GCNGC 2 cut(s) 830, 903
Sau3AI GATC 6 cut(s) 6, 49, 400, 707, 743, 840
Sau96I GGNCC 1 cut(s) 790
SchI GAGTC 1 cut(s) 971
ScrFI CCNGG 1 cut(s) 551
SfaNI GCATC 2 cut(s) 359, 431
SfcI CTRYAG 1 cut(s) 903
SinI GGWCC 1 cut(s) 790
SmiMI CAYNNNNRTG 3 cut(s) 363, 455, 885
SmlI CTYRAG 3 cut(s) 68, 107, 292
SmoI CTYRAG 3 cut(s) 68, 107, 292
Sse9I AATT 7 cut(s) 242, 384, 408, 504, 519, 531, 775
SspMI CTAG 1 cut(s) 983
StyD4I CCNGG 1 cut(s) 549
StyI CCWWGG 1 cut(s) 786
TaaI ACNGT 1 cut(s) 687
TaqI TCGA 2 cut(s) 397, 425
TasI AATT 7 cut(s) 242, 384, 408, 504, 519, 531, 775
TatI WGTACW 1 cut(s) 335
TfiI GAWTC 2 cut(s) 263, 935
Tru1I TTAA 5 cut(s) 27, 182, 387, 507, 945
Tru9I TTAA 5 cut(s) 27, 182, 387, 507, 945
TseFI GTSAC 2 cut(s) 372, 1004
TseI GCWGC 2 cut(s) 829, 902
Tsp45I GTSAC 2 cut(s) 372, 1004
TspDTI ATGAA 6 cut(s) 80, 405, 696, 791, 869, 878
VpaK11BI GGWCC 1 cut(s) 790
VspI ATTAAT 1 cut(s) 387
XagI CCTNNNNNAGG 1 cut(s) 629
XbaI TCTAGA 1 cut(s) 982
XspI CTAG 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.