Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006021

Physical Location & Seq

Genomic Coordinates Reverse (-)

32103397 .. 32105557

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32870.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTGGTCGATTGTTTAAACTGGAGGCTACAAAATGATATTGACAATATATTAGCCAAGCCCATAGTTCCAACTGAACTATACAGAGGAGTGCGAGATTCACAGCTCATAGGTCTTTCGGGTTACTCAAGAGAGGGCTTGCCCGTCTTTGCCATTGGTGTTGGGCTAAGTACATTTGACAAAGCATCGGTTCACTACTATGTGCAGTCACACATTCAAATTAATGAATATCGAGATCGTGTAATTTTGCCTTCTGCATCGAAGAAGTATGGTAAGCCTATTATCACTTGCATCAAGGTTTTAGATATGACTGGTTTGAAGCTCTCGGCACTAAGCCAAATAAAGTTACTGACAACCATATCAACCATTGATGATTTGAACTACCCGGAGAAGACAAATACATACTACATTGTAAATGCCCCTTATATATTCTCAGCTTGTTGGAAGGTTGTCAAGCCACTTTTGCAGGAGAGGACAAGGAAGAAAGTGCAAGTGTTGTCTGGTTGTGGTAGGGATGAACTGTTGGAGATAATGGATTATGCATCCCTTCCACATTTCTGTGAAGGAGAAGGTTCAGGATCATCTCGAAATTCACAGAATGGAGCTGACAATTGCTTCTCCTTGGACCACCACTTTCATCAACAACTCTACACCCACATCAGGCAGCAGTCTCTGATGAAGGAATCCGTTCAACCAATCAGAAATGGTTCTTTTCATGTGGATGTACCTGAGGCGGCTGCAGAAAGAACTCATATTGCTGAAACGATTGTATCTGAGTTTAACAAGTTTGGTAATCAGAATGGGCTATCTGAGTCTTTAGATGGCCTAAAAATCAATGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

282

Amino Acids

31.54

Weight (kDa)

6.5

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47730 AT5G47730 AT5G47730 AT5G47730
fragaria_vesca	FvH4_3g00280 FvH4_3g00280 FvH4_3g00280 FvH4_4g17420
malus_domestica	MD05G1362300.v1.1 MD10G1339800.v1.1
prunus_persica	Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1
pyrus_communis	pycom05g32870 pycom10g28960
rosa_chinensis	RchiOBHm_Chr5g0000411
rosa_laevigata	RLG00000030864
rosa_multiflora	Rmu_co8373963.1_g000001 Rmu_sc0003949.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075750
rosa_rugosa	Rorug04G0383400
rosa_samantha	Rh5AG003300 Rh5BG004400 Rh5CG003500 Rh5DG003400
rosa_wichuraiana	Rw5G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	734
AclWI	GGATC	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	589
AfaI	GTAC	2 cut(s)	172, 726
AfiI	CCNNNNNNNGG	1 cut(s)	660
AgsI	TTSAA	4 cut(s)	218, 319, 379, 692
AluBI	AGCT	4 cut(s)	106, 322, 437, 605
AluI	AGCT	4 cut(s)	106, 322, 437, 605
Alw26I	GTCTC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	586
AlwNI	CAGNNNCTG	1 cut(s)	673
AoxI	GGCC	1 cut(s)	823
ApeKI	GCWGC	2 cut(s)	664, 737
ApoI	RAATTY	1 cut(s)	589
AseI	ATTAAT	1 cut(s)	222
Asp700I	GAANNNNTTC	2 cut(s)	687, 706
AspS9I	GGNCC	1 cut(s)	625
AsuC2I	CCSGG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	625
AxyI	CCTNAGG	1 cut(s)	729
BaeI	ACNNNNGTAYC	2 cut(s)	753, 786
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	2 cut(s)	676, 724
BccI	CCATC	1 cut(s)	815
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	738
BisI	GCNGC	3 cut(s)	665, 735, 738
BlsI	GCNGC	3 cut(s)	666, 736, 739
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	625
BmgT120I	GGNCC	1 cut(s)	625
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	4 cut(s)	194, 266, 300, 551
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	2 cut(s)	26, 316
Bse21I	CCTNAGG	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	3 cut(s)	520, 542, 727
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMII	CTCAG	4 cut(s)	447, 720, 765, 801
BseNI	ACTGG	2 cut(s)	26, 316
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	676, 724
BsgI	GTGCAG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	825
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	675
BsnI	GGCC	1 cut(s)	825
Bsp143I	GATC	2 cut(s)	235, 578
BspACI	CCGC	1 cut(s)	734
BspANI	GGCC	1 cut(s)	825
BspCNI	CTCAG	4 cut(s)	446, 721, 766, 802
BspMAI	CTGCAG	1 cut(s)	742
BspPI	GGATC	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	26, 316
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	2 cut(s)	235, 578
BssT1I	CCWWGG	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	6 cut(s)	167, 332, 433, 729, 774, 810
BstF5I	GGATG	3 cut(s)	520, 542, 727
BstKTI	GATC	2 cut(s)	238, 581
BstMAI	GTCTC	1 cut(s)	675
BstMBI	GATC	2 cut(s)	235, 578
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	738
BstV1I	GCAGC	2 cut(s)	676, 724
BstV2I	GAAGAC	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	1 cut(s)	825
BtsCI	GGATG	3 cut(s)	520, 542, 727
Cac8I	GCNNGC	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	673
Cfr13I	GGNCC	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	171, 725
CviAII	CATG	1 cut(s)	716
CviQI	GTAC	2 cut(s)	171, 725
DdeI	CTNAG	6 cut(s)	167, 332, 433, 729, 774, 810
DpnI	GATC	2 cut(s)	237, 580
DpnII	GATC	2 cut(s)	235, 578
DraI	TTTAAA	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	625
Eco81I	CCTNAGG	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	621
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	1 cut(s)	719
FatI	CATG	1 cut(s)	715
Fnu4HI	GCNGC	3 cut(s)	665, 735, 738
FokI	GGATG	3 cut(s)	527, 529, 734
Fsp4HI	GCNGC	3 cut(s)	665, 735, 738
GluI	GCNGC	3 cut(s)	665, 735, 738
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	825
HapII	CCGG	1 cut(s)	386
Hin1II	CATG	1 cut(s)	719
HinfI	GANTC	3 cut(s)	98, 683, 812
HpaII	CCGG	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	5 cut(s)	675, 701, 775, 798, 811
Hpy188III	TCNNGA	4 cut(s)	129, 233, 576, 585
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	6 cut(s)	261, 439, 557, 557, 563, 673
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4V	TGCA	7 cut(s)	205, 257, 291, 466, 490, 542, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	6 cut(s)	167, 332, 433, 729, 774, 810
Hsp92II	CATG	1 cut(s)	719
Kzo9I	GATC	2 cut(s)	235, 578
LmnI	GCTCC	1 cut(s)	602
LpnPI	CCDG	8 cut(s)	7, 297, 399, 452, 486, 561, 646, 741
Lsp1109I	GCAGC	2 cut(s)	676, 724
LweI	GCATC	4 cut(s)	194, 266, 300, 551
MaeIII	GTNAC	3 cut(s)	122, 207, 345
MalI	GATC	2 cut(s)	237, 580
MboI	GATC	2 cut(s)	235, 578
MboII	GAAGA	3 cut(s)	274, 403, 493
MfeI	CAATTG	1 cut(s)	610
MluCI	AATT	4 cut(s)	219, 243, 589, 610
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	3 cut(s)	95, 422, 504
MnlI	CCTC	5 cut(s)	18, 80, 127, 465, 724
Mph1103I	ATGCAT	1 cut(s)	544
MroXI	GAANNNNTTC	2 cut(s)	687, 706
MseI	TTAA	3 cut(s)	17, 222, 780
MslI	CAYNNNNRTG	3 cut(s)	198, 558, 720
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	386
MssI	GTTTAAAC	1 cut(s)	18
MunI	CAATTG	1 cut(s)	610
MwoI	GCNNNNNNNGC	1 cut(s)	463
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	235, 578
NlaIII	CATG	1 cut(s)	719
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	544
PdmI	GAANNNNTTC	2 cut(s)	687, 706
PfeI	GAWTC	2 cut(s)	98, 683
PkrI	GCNGC	3 cut(s)	666, 736, 739
PleI	GAGTC	1 cut(s)	820
PmeI	GTTTAAAC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	820
PshBI	ATTAAT	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	625
PstI	CTGCAG	1 cut(s)	742
PstNI	CAGNNNCTG	1 cut(s)	673
RsaI	GTAC	2 cut(s)	172, 726
RsaNI	GTAC	2 cut(s)	171, 725
RseI	CAYNNNNRTG	3 cut(s)	198, 558, 720
SaqAI	TTAA	3 cut(s)	17, 222, 780
SatI	GCNGC	3 cut(s)	665, 735, 738
Sau3AI	GATC	2 cut(s)	235, 578
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	9 cut(s)	108, 115, 300, 324, 439, 450, 574, 607, 730
SfaNI	GCATC	4 cut(s)	194, 266, 300, 551
SfcI	CTRYAG	1 cut(s)	738
SinI	GGWCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	3 cut(s)	198, 558, 720
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	4 cut(s)	219, 243, 589, 610
SsiI	CCGC	1 cut(s)	734
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	522
TaqI	TCGA	4 cut(s)	9, 232, 260, 586
TasI	AATT	4 cut(s)	219, 243, 589, 610
TatI	WGTACW	1 cut(s)	170
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	2 cut(s)	98, 683
Tru1I	TTAA	3 cut(s)	17, 222, 780
Tru9I	TTAA	3 cut(s)	17, 222, 780
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	2 cut(s)	664, 737
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	5 cut(s)	240, 531, 626, 692, 704
TspGWI	ACGGA	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	625
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	1 cut(s)	589
XmnI	GAANNNNTTC	2 cut(s)	687, 706
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.