Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006021

Physical Location & Seq

Genomic Coordinates Reverse (-)

47747575 .. 47751048

Gene Structure 3474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1362300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGGATCGTTTCTCAGGAAGCGATCAAGCAGTTCCAAGCTCTGATGGACCGAGTTGATGAGCCTCTCAAGAGATCGTTTCAGAATGTTCATCAAGGCTATCTAGTTGAGACTTTCGGCCGCTTTCTCAAAGCAAGGGATTCCAATGTTGCCAAAGCCCATAAAATGTTGGTCGATTGTTTAAACTGGAGGGTACAAAATGATATTGACAATATATTAGCCAAGCCCATAGTTCCAACTGAACTATACAGAGGAGTGCGAGATTCACAGCTCATAGGTCTTTCGGGTTACTCAAGAGAGGGCTTGCCCGTCTTTGCCATTGGTGTTGGGCTAAGTACATTTGACAAAGCATCGTTTCACTACTATGTGCAGTCACACATTCAAATTAATGAATATCGAGATCATGTAATTTTGCCTTCTGCATCGAAGAAGTATGGTAAGCCTATTACCACCTGCATCAAGGTTTTAGATATGACTGGTTTGAAGCTCTCGGCACTAAGCCAAATAAAGTTACTGACAACTATATCAACCATTGATGATTTGAACTACCCGGAGAAGACAAATACATACTACATTGTAAATGCCCCTTATATATTCTCAACTTGTTGGAAGGTTGTCAAGCCACTTTTGCAGGAGAGGACAAGGAAAAAAGTGCAAGTGTTGTCTGGTTGTGGTAGGGATGAACTGTTGGAGATAATGGATTATGCATCCCTTCCACATTTCTGTGAAAGAGAAGGTTCAGGATCATCTCAAAATTCACAGAATGAAGCTGACAATTGCTTCTCCTTGGACCACCACTTTCATCAACAGCTCTACACCCACATCAGGCAGCAGTCTCTGATGAAGGAATCCGTTCAACCAATCAGACACGGTTCTTTTCATGTGGATGTACCTGAGGCTGCTGCAGAAAGAACTCATATTGCTAAAACGATAGAATCTGAGTTTAACAAGTTTGGTAATCGGAATGGGCTATCTGAGTCTTTAGATGGCCTAAAAATCAATGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

337

Amino Acids

38.11

Weight (kDa)

7.68

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	8 - 59	6.1e-08	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	89 - 241	8e-18	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47730 AT5G47730 AT5G47730 AT5G47730
fragaria_vesca	FvH4_3g00280 FvH4_3g00280 FvH4_3g00280 FvH4_4g17420
malus_domestica	MD05G1362300.v1.1 MD10G1339800.v1.1
prunus_persica	Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1
pyrus_communis	pycom05g32870 pycom10g28960
rosa_chinensis	RchiOBHm_Chr5g0000411
rosa_laevigata	RLG00000030864
rosa_multiflora	Rmu_co8373963.1_g000001 Rmu_sc0003949.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075750
rosa_rugosa	Rorug04G0383400
rosa_samantha	Rh5AG003300 Rh5BG004400 Rh5CG003500 Rh5DG003400
rosa_wichuraiana	Rw5G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	461
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	2 cut(s)	14, 751
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	754
AfaI	GTAC	3 cut(s)	195, 337, 891
AfiI	CCNNNNNNNGG	1 cut(s)	825
AgsI	TTSAA	4 cut(s)	383, 484, 544, 857
AluBI	AGCT	5 cut(s)	41, 271, 487, 770, 811
AluI	AGCT	5 cut(s)	41, 271, 487, 770, 811
Alw26I	GTCTC	2 cut(s)	104, 840
AlwI	GGATC	2 cut(s)	14, 751
AlwNI	CAGNNNCTG	1 cut(s)	838
AoxI	GGCC	2 cut(s)	118, 988
ApeKI	GCWGC	3 cut(s)	829, 899, 902
ApoI	RAATTY	1 cut(s)	754
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	852
AspS9I	GGNCC	2 cut(s)	49, 790
AsuC2I	CCSGG	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	49, 790
AxyI	CCTNAGG	1 cut(s)	894
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	3 cut(s)	841, 886, 889
BccI	CCATC	2 cut(s)	40, 980
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	104, 840
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	903
BfuAI	ACCTGC	1 cut(s)	461
BisI	GCNGC	4 cut(s)	121, 830, 900, 903
BlsI	GCNGC	4 cut(s)	122, 831, 901, 904
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	2 cut(s)	49, 790
BmgT120I	GGNCC	2 cut(s)	49, 790
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	4 cut(s)	359, 431, 465, 716
BpiI	GAAGAC	1 cut(s)	563
BpmI	CTGGAG	1 cut(s)	208
BpuEI	CTTGAG	2 cut(s)	53, 277
BpuMI	CCSGG	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	786
Bsc4I	CCNNNNNNNGG	1 cut(s)	825
Bse1I	ACTGG	2 cut(s)	191, 481
Bse21I	CCTNAGG	1 cut(s)	894
BseDI	CCNNGG	1 cut(s)	786
BseGI	GGATG	3 cut(s)	685, 707, 892
BseLI	CCNNNNNNNGG	1 cut(s)	825
BseMII	CTCAG	4 cut(s)	29, 885, 930, 966
BseNI	ACTGG	2 cut(s)	191, 481
BseRI	GAGGAG	1 cut(s)	267
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	841, 886, 889
BsgI	GTGCAG	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	120, 990
BsiEI	CGRYCG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	825
BsmAI	GTCTC	2 cut(s)	104, 840
BsnI	GGCC	2 cut(s)	120, 990
Bsp143I	GATC	5 cut(s)	6, 24, 74, 400, 743
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	120, 990
BspCNI	CTCAG	4 cut(s)	28, 886, 931, 967
BspMAI	CTGCAG	1 cut(s)	907
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	14, 751
BsrI	ACTGG	2 cut(s)	191, 481
BssECI	CCNNGG	1 cut(s)	786
BssMI	GATC	5 cut(s)	6, 24, 74, 400, 743
BssT1I	CCWWGG	1 cut(s)	786
Bst4CI	ACNGT	2 cut(s)	687, 872
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	6 cut(s)	15, 332, 497, 894, 939, 975
BstF5I	GGATG	3 cut(s)	685, 707, 892
BstKTI	GATC	5 cut(s)	9, 27, 77, 403, 746
BstMAI	GTCTC	2 cut(s)	104, 840
BstMBI	GATC	5 cut(s)	6, 24, 74, 400, 743
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	903
BstV1I	GCAGC	3 cut(s)	841, 886, 889
BstV2I	GAAGAC	1 cut(s)	563
BstZI	CGGCCG	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	894
BsuRI	GGCC	2 cut(s)	120, 990
BtsCI	GGATG	3 cut(s)	685, 707, 892
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	305
CaiI	CAGNNNCTG	1 cut(s)	838
Cfr13I	GGNCC	2 cut(s)	49, 790
Csp6I	GTAC	3 cut(s)	194, 336, 890
CviAII	CATG	2 cut(s)	404, 881
CviQI	GTAC	3 cut(s)	194, 336, 890
DdeI	CTNAG	6 cut(s)	15, 332, 497, 894, 939, 975
DpnI	GATC	5 cut(s)	8, 26, 76, 402, 745
DpnII	GATC	5 cut(s)	6, 24, 74, 400, 743
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	118
EagI	CGGCCG	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	786
Eco47I	GGWCC	2 cut(s)	49, 790
Eco52I	CGGCCG	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	894
EcoT14I	CCWWGG	1 cut(s)	786
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	2 cut(s)	407, 884
FatI	CATG	2 cut(s)	403, 880
Fnu4HI	GCNGC	4 cut(s)	121, 830, 900, 903
FokI	GGATG	3 cut(s)	692, 694, 899
Fsp4HI	GCNGC	4 cut(s)	121, 830, 900, 903
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	4 cut(s)	121, 830, 900, 903
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	120, 990
HapII	CCGG	1 cut(s)	551
Hin1II	CATG	2 cut(s)	407, 884
HinfI	GANTC	5 cut(s)	140, 263, 848, 935, 977
HpaII	CCGG	1 cut(s)	551
Hpy188I	TCNGA	7 cut(s)	45, 84, 840, 866, 940, 963, 976
Hpy188III	TCNNGA	5 cut(s)	17, 70, 294, 398, 741
HpyAV	CCTTC	5 cut(s)	426, 604, 722, 728, 838
HpyCH4III	ACNGT	2 cut(s)	687, 872
HpyCH4V	TGCA	7 cut(s)	370, 422, 456, 631, 655, 707, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	6 cut(s)	15, 332, 497, 894, 939, 975
Hsp92II	CATG	2 cut(s)	407, 884
Kzo9I	GATC	5 cut(s)	6, 24, 74, 400, 743
Lsp1109I	GCAGC	3 cut(s)	841, 886, 889
LweI	GCATC	4 cut(s)	359, 431, 465, 716
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	3 cut(s)	287, 372, 510
MalI	GATC	5 cut(s)	8, 26, 76, 402, 745
MboI	GATC	5 cut(s)	6, 24, 74, 400, 743
MboII	GAAGA	2 cut(s)	439, 568
MfeI	CAATTG	1 cut(s)	775
MluCI	AATT	4 cut(s)	384, 408, 754, 775
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	3 cut(s)	260, 587, 669
MnlI	CCTC	6 cut(s)	75, 183, 245, 292, 630, 889
Mph1103I	ATGCAT	1 cut(s)	709
MroXI	GAANNNNTTC	1 cut(s)	852
MseI	TTAA	3 cut(s)	182, 387, 945
MslI	CAYNNNNRTG	3 cut(s)	363, 723, 885
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	551
MssI	GTTTAAAC	1 cut(s)	183
MunI	CAATTG	1 cut(s)	775
MwoI	GCNNNNNNNGC	1 cut(s)	628
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	5 cut(s)	6, 24, 74, 400, 743
NlaIII	CATG	2 cut(s)	407, 884
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	372
NsiI	ATGCAT	1 cut(s)	709
PaqCI	CACCTGC	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	4 cut(s)	140, 263, 848, 935
PkrI	GCNGC	4 cut(s)	122, 831, 901, 904
PleI	GAGTC	1 cut(s)	985
PmeI	GTTTAAAC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	985
PshBI	ATTAAT	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	49, 790
PstI	CTGCAG	1 cut(s)	907
PstNI	CAGNNNCTG	1 cut(s)	838
RsaI	GTAC	3 cut(s)	195, 337, 891
RsaNI	GTAC	3 cut(s)	194, 336, 890
RseI	CAYNNNNRTG	3 cut(s)	363, 723, 885
SaqAI	TTAA	3 cut(s)	182, 387, 945
SatI	GCNGC	4 cut(s)	121, 830, 900, 903
Sau3AI	GATC	5 cut(s)	6, 24, 74, 400, 743
Sau96I	GGNCC	2 cut(s)	49, 790
SchI	GAGTC	1 cut(s)	986
ScrFI	CCNGG	1 cut(s)	551
SfaNI	GCATC	4 cut(s)	359, 431, 465, 716
SfcI	CTRYAG	1 cut(s)	903
SinI	GGWCC	2 cut(s)	49, 790
SmiMI	CAYNNNNRTG	3 cut(s)	363, 723, 885
SmlI	CTYRAG	2 cut(s)	68, 292
SmoI	CTYRAG	2 cut(s)	68, 292
Sse9I	AATT	4 cut(s)	384, 408, 754, 775
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	2 cut(s)	687, 872
TaqI	TCGA	3 cut(s)	174, 397, 425
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	4 cut(s)	384, 408, 754, 775
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	4 cut(s)	140, 263, 848, 935
Tru1I	TTAA	3 cut(s)	182, 387, 945
Tru9I	TTAA	3 cut(s)	182, 387, 945
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	3 cut(s)	829, 899, 902
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	7 cut(s)	80, 405, 696, 780, 791, 857, 869
TspGWI	ACGGA	1 cut(s)	841
VpaK11BI	GGWCC	2 cut(s)	49, 790
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.