Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006021

Physical Location & Seq

Genomic Coordinates Forward (+)

247152 .. 251049

Gene Structure 3898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28196

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGGATCGTTTCTCAGGAGGCGATCAAGCAATTCCAAGCTTTAATGGATCAAGTGCCAGTTGATGAACCACTGAAGAGAACATTTCAGAATGTTCACCAAGGATTTCTCGTTCAGACTTTTGCGCGTTTTCTCAAAGCAAGAGAGTGGAATGTTGTCAAAGCCCATAAAATGTTGATGGATTGTTTAAACTGGAGGGTACAAAATGAGATTGACAGTATATTGGCCAAACCCATAATTCCAACTGAATTGTACAGAGGAGTGCGAGACTCACAGCTCATAGGCCTTTCAGGTTACTCTAGAGAGGGTATGCCAGTCTTTGCTATTGGGGTTGGTTTAAGTACATTTAATAAAGCGTCTGTTCATTACTATGTGCAGTCACACATTCAAATCAATGAATATCGAGATCGTGTTATTTTGCCGTCTGCATCGAAGAAGTATGGTAAGCCTATTACCACGTGTGTGAAGGTTTTAGATATGACTGGGTTGAAGCTTTCAGCACTAAACCAAATTAAGTTGTTGACAATTATATCCACAGTTGATGATTTGAACTACCCAGAGAAGACAAATACGTACTACATTGTAAATGTGCCTTACATATTCTCAGCCTGTTGGAAGGTTGTCAAGCCCCTTTTGCAGGAGAGGACAAGGAAAAAAGTACAAGTATTGTCTGGTTGTGGTACAGATGAGTTGTTGAAGATAATGGATTATGCATCTCTTCCCCATTTCTGTAAAAGGGAAGGTTCTGGATCATCTCGGCATTCACAGAATGGAACTGACAATTGCTTCTCCTTGGATGACCGTTTTCATCAACAGCTCTACAACTACATCAAGCAGCAATCTTTGATCAATGAATCCGTTCAACCAATCAAGCAGGGTTCTTTTCATGTGGACATACCTGAGCGAGCTGCAGAAGGAACACAGATAACAATAGAATCTGAGTTCAACAAGTTTGGTAACGGCAATGGGGTATCTGATTCTCTAAATGCCCTCAAAATCAATGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

336

Amino Acids

38.03

Weight (kDa)

8.86

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	8 - 61	3.3e-09	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	91 - 243	2.9e-18	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47730 AT5G47730 AT5G47730 AT5G47730
fragaria_vesca	FvH4_3g00280 FvH4_3g00280 FvH4_3g00280 FvH4_4g17420
malus_domestica	MD05G1362300.v1.1 MD10G1339800.v1.1
prunus_persica	Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1
pyrus_communis	pycom05g32870 pycom10g28960
rosa_chinensis	RchiOBHm_Chr5g0000411
rosa_laevigata	RLG00000030864
rosa_multiflora	Rmu_co8373963.1_g000001 Rmu_sc0003949.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075750
rosa_rugosa	Rorug04G0383400
rosa_samantha	Rh5AG003300 Rh5BG004400 Rh5CG003500 Rh5DG003400
rosa_wichuraiana	Rw5G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	127
AclWI	GGATC	3 cut(s)	14, 57, 757
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	95
AcvI	CACGTG	1 cut(s)	459
AfaI	GTAC	6 cut(s)	201, 254, 343, 575, 660, 682
AfiI	CCNNNNNNNGG	1 cut(s)	637
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	6 cut(s)	389, 490, 550, 697, 863, 946
AleI	CACNNNNGTG	1 cut(s)	461
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	5 cut(s)	41, 277, 493, 817, 908
AluI	AGCT	5 cut(s)	41, 277, 493, 817, 908
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	3 cut(s)	14, 57, 757
AoxI	GGCC	2 cut(s)	225, 283
ApeKI	GCWGC	2 cut(s)	835, 908
Asp700I	GAANNNNTTC	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	227
BbrPI	CACGTG	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	569
BbvI	GCAGC	2 cut(s)	847, 895
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	2 cut(s)	406, 976
BclI	TGATCA	1 cut(s)	846
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	909
BisI	GCNGC	2 cut(s)	836, 909
BlsI	GCNGC	2 cut(s)	837, 910
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	437, 722
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	569
BpmI	CTGGAG	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	900
BsaAI	YACGTR	2 cut(s)	459, 573
BsaJI	CCNNGG	2 cut(s)	100, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse1I	ACTGG	4 cut(s)	59, 197, 314, 487
Bse3DI	GCAATG	1 cut(s)	970
BseDI	CCNNGG	2 cut(s)	100, 792
BseGI	GGATG	1 cut(s)	802
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMI	GCAATG	1 cut(s)	970
BseMII	CTCAG	4 cut(s)	29, 618, 891, 930
BseNI	ACTGG	4 cut(s)	59, 197, 314, 487
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	847, 895
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	227, 285
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	2 cut(s)	227, 285
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	6, 24, 49, 406, 749, 846
BspANI	GGCC	2 cut(s)	227, 285
BspCNI	CTCAG	4 cut(s)	28, 617, 892, 931
BspFNI	CGCG	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	3 cut(s)	14, 57, 757
BsrDI	GCAATG	1 cut(s)	970
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	4 cut(s)	59, 197, 314, 487
BssECI	CCNNGG	2 cut(s)	100, 792
BssMI	GATC	6 cut(s)	6, 24, 49, 406, 749, 846
BssT1I	CCWWGG	2 cut(s)	100, 792
Bst4CI	ACNGT	3 cut(s)	218, 538, 803
Bst6I	CTCTTC	2 cut(s)	71, 723
BstAUI	TGTACA	1 cut(s)	252
BstBAI	YACGTR	2 cut(s)	459, 573
BstC8I	GCNNGC	1 cut(s)	906
BstDEI	CTNAG	4 cut(s)	15, 604, 900, 939
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	1 cut(s)	802
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	6 cut(s)	9, 27, 52, 409, 752, 849
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	6 cut(s)	6, 24, 49, 406, 749, 846
BstMWI	GCNNNNNNNGC	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	909
BstSNI	TACGTA	1 cut(s)	573
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	847, 895
BstV2I	GAAGAC	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	227, 285
BtsCI	GGATG	1 cut(s)	802
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	906
CfoI	GCGC	1 cut(s)	127
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	6 cut(s)	200, 253, 342, 574, 659, 681
CviAII	CATG	1 cut(s)	887
CviQI	GTAC	6 cut(s)	200, 253, 342, 574, 659, 681
DdeI	CTNAG	4 cut(s)	15, 604, 900, 939
DpnI	GATC	6 cut(s)	8, 26, 51, 408, 751, 848
DpnII	GATC	6 cut(s)	6, 24, 49, 406, 749, 846
DraI	TTTAAA	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	71, 723
EarI	CTCTTC	2 cut(s)	71, 723
Eco105I	TACGTA	1 cut(s)	573
Eco130I	CCWWGG	2 cut(s)	100, 792
Eco147I	AGGCCT	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	95
Eco72I	CACGTG	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoT14I	CCWWGG	2 cut(s)	100, 792
EcoT22I	ATGCAT	1 cut(s)	715
ErhI	CCWWGG	2 cut(s)	100, 792
FaeI	CATG	1 cut(s)	890
FatI	CATG	1 cut(s)	886
FbaI	TGATCA	1 cut(s)	846
Fnu4HI	GCNGC	2 cut(s)	836, 909
FokI	GGATG	1 cut(s)	809
Fsp4HI	GCNGC	2 cut(s)	836, 909
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	836, 909
GsuI	CTGGAG	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	227, 285
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	890
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HindIII	AAGCTT	2 cut(s)	39, 491
HinfI	GANTC	4 cut(s)	269, 854, 935, 977
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	3 cut(s)	97, 522, 892
Hpy188I	TCNGA	4 cut(s)	90, 117, 940, 976
Hpy188III	TCNNGA	4 cut(s)	17, 300, 404, 747
Hpy8I	GTNNAC	3 cut(s)	97, 522, 892
HpyAV	CCTTC	4 cut(s)	460, 610, 734, 908
HpyCH4III	ACNGT	3 cut(s)	218, 538, 803
HpyCH4IV	ACGT	2 cut(s)	458, 572
HpyCH4V	TGCA	5 cut(s)	376, 428, 637, 713, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	634
HpyF3I	CTNAG	4 cut(s)	15, 604, 900, 939
HpySE526I	ACGT	2 cut(s)	458, 572
Hsp92II	CATG	1 cut(s)	890
HspAI	GCGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	846
Kzo9I	GATC	6 cut(s)	6, 24, 49, 406, 749, 846
Lsp1109I	GCAGC	2 cut(s)	847, 895
LweI	GCATC	2 cut(s)	437, 722
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	2 cut(s)	458, 572
MaeIII	GTNAC	4 cut(s)	293, 378, 956, 1004
MalI	GATC	6 cut(s)	8, 26, 51, 408, 751, 848
MboI	GATC	6 cut(s)	6, 24, 49, 406, 749, 846
MboII	GAAGA	5 cut(s)	88, 445, 574, 709, 710
MfeI	CAATTG	1 cut(s)	781
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	6 cut(s)	32, 237, 248, 510, 525, 781
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	266, 593
MnlI	CCTC	6 cut(s)	13, 189, 251, 298, 636, 1001
Mox20I	TGGCCA	1 cut(s)	227
Mph1103I	ATGCAT	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	858
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	5 cut(s)	44, 188, 338, 348, 513
MslI	CAYNNNNRTG	2 cut(s)	369, 461
Msp20I	TGGCCA	1 cut(s)	227
MssI	GTTTAAAC	1 cut(s)	189
MunI	CAATTG	1 cut(s)	781
Mva1269I	GAATGC	1 cut(s)	760
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	634
NdeII	GATC	6 cut(s)	6, 24, 49, 406, 749, 846
NlaIII	CATG	1 cut(s)	890
NmeAIII	GCCGAG	1 cut(s)	736
NmuCI	GTSAC	2 cut(s)	378, 1004
NsiI	ATGCAT	1 cut(s)	715
OliI	CACNNNNGTG	1 cut(s)	461
PceI	AGGCCT	1 cut(s)	285
PctI	GAATGC	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	3 cut(s)	854, 935, 977
PkrI	GCNGC	2 cut(s)	837, 910
PleI	GAGTC	1 cut(s)	263
PmaCI	CACGTG	1 cut(s)	459
PmeI	GTTTAAAC	1 cut(s)	189
PmlI	CACGTG	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	263
Ppu21I	YACGTR	2 cut(s)	459, 573
PspCI	CACGTG	1 cut(s)	459
PstI	CTGCAG	1 cut(s)	913
RsaI	GTAC	6 cut(s)	201, 254, 343, 575, 660, 682
RsaNI	GTAC	6 cut(s)	200, 253, 342, 574, 659, 681
RseI	CAYNNNNRTG	2 cut(s)	369, 461
SaqAI	TTAA	5 cut(s)	44, 188, 338, 348, 513
SatI	GCNGC	2 cut(s)	836, 909
Sau3AI	GATC	6 cut(s)	6, 24, 49, 406, 749, 846
SchI	GAGTC	1 cut(s)	263
SfaNI	GCATC	2 cut(s)	437, 722
SfcI	CTRYAG	1 cut(s)	909
SmiMI	CAYNNNNRTG	2 cut(s)	369, 461
SnaBI	TACGTA	1 cut(s)	573
Sse9I	AATT	6 cut(s)	32, 237, 248, 510, 525, 781
SseBI	AGGCCT	1 cut(s)	285
SspMI	CTAG	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	100, 792
TaaI	ACNGT	3 cut(s)	218, 538, 803
TaiI	ACGT	2 cut(s)	461, 575
TaqI	TCGA	2 cut(s)	403, 431
TasI	AATT	6 cut(s)	32, 237, 248, 510, 525, 781
TatI	WGTACW	3 cut(s)	252, 341, 658
TfiI	GAWTC	3 cut(s)	854, 935, 977
Tru1I	TTAA	5 cut(s)	44, 188, 338, 348, 513
Tru9I	TTAA	5 cut(s)	44, 188, 338, 348, 513
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	378, 1004
TseI	GCWGC	2 cut(s)	835, 908
Tsp45I	GTSAC	2 cut(s)	378, 1004
TspDTI	ATGAA	6 cut(s)	81, 353, 411, 797, 867, 875
TspGWI	ACGGA	1 cut(s)	847
TspRI	CASTG	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	635
XbaI	TCTAGA	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.