Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006021

Physical Location & Seq

Genomic Coordinates Forward (+)

262279 .. 265290

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG003400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCCAGTTGATGAACCACTGAAGAGAACATTTCAGAATGTTCACCAAGGATTTCTAGTTGAGACTTTTGCGCGTTTTCTCAAAGCAAGAGAGTGGAATGTTGTCAAAGCCCATAAAATGTTGATGGATTGTTTAAACTGGAGGGTACAAAATGAGATTGACAGTATATTGGCCAAACCCATAATTCCAACTGAATTGTACAGAGGAGTGCGAGACTCACAGCTCATAGGCCTTTCAGGTTACTCTAGAGAGGGTATGCCAGTCTTTGCTATTGGGGTTGGGTTAAGTACATTTAATAAAGCGTCTGTTCATTACTATGTGCAGTCACACATTCAAATCAATGAATATCGAGATCGTGTTATTTTGCCGTCTGCATCGAAGAAGTATGGTAAGCCTATTACCACGTGTGTGAAGGTTTTGGATATGACTGGGTTGAAGCTTTCAGCACTAAACCAAATTAAGTTGTTGACAATTATATCAACAGTTGATGATTTGAACTACCCAGAGAAGACAAATACGTACTACATTGTAAATGCGCCTTACATATTCTCAGCCTGTTGGAAGGTTGTCAAGCCCCTTTTGCAGGAGAGGACAAGAAAAAAAGTACAAGTATTGTCTGGTTGTGGTACAGATGAGTTGTTGAAGATAATGGATTATGCATCTCTTCCCCATTTCTGTAAAAGGGAAGGTTCTGGATCATCTCGGCATTCACAGAATGGAACTGACAATTGCTTCTCCTTGGATCACCATTTTCATCAACAGCTCTACAACTACATCAAGCAGCAATCTTTGATCAATGAATCCGTTCAACCAATCAAGCAGGGTTCTTTTCATGTGGACATACCTGAGCCAGCTGCAGAAGGAACACAGATTGCCAAAACAATAGAATCTGAGTTCAACAAGTTTGGTAACGGCAATGGGGTATCTGACTCTCTAAATGCCCTCAAAATCAATGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

320

Amino Acids

36.16

Weight (kDa)

8.86

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	6 - 43	2.1e-07	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	73 - 225	1.8e-18	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47730 AT5G47730 AT5G47730 AT5G47730
fragaria_vesca	FvH4_3g00280 FvH4_3g00280 FvH4_3g00280 FvH4_4g17420
malus_domestica	MD05G1362300.v1.1 MD10G1339800.v1.1
prunus_persica	Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1
pyrus_communis	pycom05g32870 pycom10g28960
rosa_chinensis	RchiOBHm_Chr5g0000411
rosa_laevigata	RLG00000030864
rosa_multiflora	Rmu_co8373963.1_g000001 Rmu_sc0003949.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075750
rosa_rugosa	Rorug04G0383400
rosa_samantha	Rh5AG003300 Rh5BG004400 Rh5CG003500 Rh5DG003400
rosa_wichuraiana	Rw5G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	73
AclWI	GGATC	2 cut(s)	703, 750
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	41
AcvI	CACGTG	1 cut(s)	405
AfaI	GTAC	6 cut(s)	147, 200, 289, 521, 606, 628
AfiI	CCNNNNNNNGG	1 cut(s)	583
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	6 cut(s)	335, 436, 496, 643, 809, 898
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	4 cut(s)	223, 439, 763, 854
AluI	AGCT	4 cut(s)	223, 439, 763, 854
Alw26I	GTCTC	2 cut(s)	56, 207
AlwI	GGATC	2 cut(s)	703, 750
AoxI	GGCC	2 cut(s)	171, 229
ApeKI	GCWGC	2 cut(s)	781, 854
Asp700I	GAANNNNTTC	1 cut(s)	804
AspLEI	GCGC	2 cut(s)	73, 538
AsuHPI	GGTGA	2 cut(s)	35, 737
BalI	TGGCCA	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	793, 841
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	2 cut(s)	352, 928
BclI	TGATCA	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	56, 207
BfaI	CTAG	2 cut(s)	56, 246
BfmI	CTRYAG	1 cut(s)	855
BisI	GCNGC	2 cut(s)	782, 855
BlsI	GCNGC	2 cut(s)	783, 856
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	383, 668
BmuI	ACTGGG	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	515
BpmI	CTGGAG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	846
BsaAI	YACGTR	2 cut(s)	405, 519
BsaJI	CCNNGG	2 cut(s)	46, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse1I	ACTGG	4 cut(s)	5, 143, 260, 433
Bse3DI	GCAATG	1 cut(s)	922
BseDI	CCNNGG	2 cut(s)	46, 738
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	3 cut(s)	564, 837, 882
BseNI	ACTGG	4 cut(s)	5, 143, 260, 433
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	793, 841
BsgI	GTGCAG	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	173, 231
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	2 cut(s)	56, 207
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	2 cut(s)	173, 231
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	352, 695, 742, 792
BspANI	GGCC	2 cut(s)	173, 231
BspCNI	CTCAG	3 cut(s)	563, 838, 883
BspFNI	CGCG	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	859
BspPI	GGATC	2 cut(s)	703, 750
BsrDI	GCAATG	1 cut(s)	922
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	4 cut(s)	5, 143, 260, 433
BssECI	CCNNGG	2 cut(s)	46, 738
BssMI	GATC	4 cut(s)	352, 695, 742, 792
BssT1I	CCWWGG	2 cut(s)	46, 738
Bst4CI	ACNGT	2 cut(s)	164, 484
Bst6I	CTCTTC	2 cut(s)	17, 669
BstAUI	TGTACA	1 cut(s)	198
BstBAI	YACGTR	2 cut(s)	405, 519
BstC8I	GCNNGC	1 cut(s)	852
BstDEI	CTNAG	3 cut(s)	550, 846, 891
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstFNI	CGCG	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	73, 538
BstKTI	GATC	4 cut(s)	355, 698, 745, 795
BstMAI	GTCTC	2 cut(s)	56, 207
BstMBI	GATC	4 cut(s)	352, 695, 742, 792
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstSFI	CTRYAG	1 cut(s)	855
BstSNI	TACGTA	1 cut(s)	519
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	793, 841
BstV2I	GAAGAC	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	173, 231
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	852
CfoI	GCGC	2 cut(s)	73, 538
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	6 cut(s)	146, 199, 288, 520, 605, 627
CviAII	CATG	1 cut(s)	833
CviQI	GTAC	6 cut(s)	146, 199, 288, 520, 605, 627
DdeI	CTNAG	3 cut(s)	550, 846, 891
DpnI	GATC	4 cut(s)	354, 697, 744, 794
DpnII	GATC	4 cut(s)	352, 695, 742, 792
DraI	TTTAAA	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	17, 669
EarI	CTCTTC	2 cut(s)	17, 669
Eco105I	TACGTA	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	46, 738
Eco147I	AGGCCT	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	41
Eco72I	CACGTG	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoT14I	CCWWGG	2 cut(s)	46, 738
EcoT22I	ATGCAT	1 cut(s)	661
ErhI	CCWWGG	2 cut(s)	46, 738
FaeI	CATG	1 cut(s)	836
FatI	CATG	1 cut(s)	832
FbaI	TGATCA	1 cut(s)	792
Fnu4HI	GCNGC	2 cut(s)	782, 855
Fsp4HI	GCNGC	2 cut(s)	782, 855
FspBI	CTAG	2 cut(s)	56, 246
GlaI	GCGC	2 cut(s)	72, 537
GluI	GCNGC	2 cut(s)	782, 855
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	173, 231
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	2 cut(s)	73, 538
Hin1II	CATG	1 cut(s)	836
Hin6I	GCGC	2 cut(s)	71, 536
HinP1I	GCGC	2 cut(s)	71, 536
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	4 cut(s)	215, 800, 887, 929
HphI	GGTGA	2 cut(s)	35, 737
Hpy166II	GTNNAC	3 cut(s)	43, 468, 838
Hpy188I	TCNGA	3 cut(s)	36, 892, 928
Hpy188III	TCNNGA	3 cut(s)	246, 350, 693
Hpy8I	GTNNAC	3 cut(s)	43, 468, 838
HpyAV	CCTTC	4 cut(s)	406, 556, 680, 854
HpyCH4III	ACNGT	2 cut(s)	164, 484
HpyCH4IV	ACGT	2 cut(s)	404, 518
HpyCH4V	TGCA	5 cut(s)	322, 374, 583, 659, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	3 cut(s)	550, 846, 891
HpySE526I	ACGT	2 cut(s)	404, 518
Hsp92II	CATG	1 cut(s)	836
HspAI	GCGC	2 cut(s)	71, 536
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	4 cut(s)	352, 695, 742, 792
Lsp1109I	GCAGC	2 cut(s)	793, 841
LweI	GCATC	2 cut(s)	383, 668
MaeI	CTAG	2 cut(s)	56, 246
MaeII	ACGT	2 cut(s)	404, 518
MaeIII	GTNAC	4 cut(s)	239, 324, 908, 956
MalI	GATC	4 cut(s)	354, 697, 744, 794
MboI	GATC	4 cut(s)	352, 695, 742, 792
MboII	GAAGA	5 cut(s)	34, 391, 520, 655, 656
MfeI	CAATTG	1 cut(s)	727
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	5 cut(s)	183, 194, 456, 471, 727
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	209, 923
MmeI	TCCRAC	2 cut(s)	212, 539
MnlI	CCTC	5 cut(s)	135, 197, 244, 582, 953
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	804
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	4 cut(s)	134, 284, 294, 459
MslI	CAYNNNNRTG	2 cut(s)	315, 407
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	854
MssI	GTTTAAAC	1 cut(s)	135
MunI	CAATTG	1 cut(s)	727
Mva1269I	GAATGC	1 cut(s)	706
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	580
NdeII	GATC	4 cut(s)	352, 695, 742, 792
NlaIII	CATG	1 cut(s)	836
NmeAIII	GCCGAG	1 cut(s)	682
NmuCI	GTSAC	2 cut(s)	324, 956
NsiI	ATGCAT	1 cut(s)	661
OliI	CACNNNNGTG	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	231
PctI	GAATGC	1 cut(s)	706
PdmI	GAANNNNTTC	1 cut(s)	804
PfeI	GAWTC	2 cut(s)	800, 887
PkrI	GCNGC	2 cut(s)	783, 856
PleI	GAGTC	2 cut(s)	209, 923
PmaCI	CACGTG	1 cut(s)	405
PmeI	GTTTAAAC	1 cut(s)	135
PmlI	CACGTG	1 cut(s)	405
PpsI	GAGTC	2 cut(s)	209, 923
Ppu21I	YACGTR	2 cut(s)	405, 519
PspCI	CACGTG	1 cut(s)	405
PstI	CTGCAG	1 cut(s)	859
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	6 cut(s)	147, 200, 289, 521, 606, 628
RsaNI	GTAC	6 cut(s)	146, 199, 288, 520, 605, 627
RseI	CAYNNNNRTG	2 cut(s)	315, 407
SaqAI	TTAA	4 cut(s)	134, 284, 294, 459
SatI	GCNGC	2 cut(s)	782, 855
Sau3AI	GATC	4 cut(s)	352, 695, 742, 792
SchI	GAGTC	2 cut(s)	209, 923
SfaNI	GCATC	2 cut(s)	383, 668
SfcI	CTRYAG	1 cut(s)	855
SmiMI	CAYNNNNRTG	2 cut(s)	315, 407
SnaBI	TACGTA	1 cut(s)	519
Sse9I	AATT	5 cut(s)	183, 194, 456, 471, 727
SseBI	AGGCCT	1 cut(s)	231
SspMI	CTAG	2 cut(s)	56, 246
StuI	AGGCCT	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	46, 738
TaaI	ACNGT	2 cut(s)	164, 484
TaiI	ACGT	2 cut(s)	407, 521
TaqI	TCGA	2 cut(s)	349, 377
TasI	AATT	5 cut(s)	183, 194, 456, 471, 727
TatI	WGTACW	3 cut(s)	198, 287, 604
TfiI	GAWTC	2 cut(s)	800, 887
Tru1I	TTAA	4 cut(s)	134, 284, 294, 459
Tru9I	TTAA	4 cut(s)	134, 284, 294, 459
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	2 cut(s)	324, 956
TseI	GCWGC	2 cut(s)	781, 854
Tsp45I	GTSAC	2 cut(s)	324, 956
TspDTI	ATGAA	6 cut(s)	27, 299, 357, 743, 813, 821
TspGWI	ACGGA	1 cut(s)	793
TspRI	CASTG	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	581
XbaI	TCTAGA	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	804
XspI	CTAG	2 cut(s)	56, 246
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.