Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006021

Physical Location & Seq

Genomic Coordinates Forward (+)

297956 .. 301085

Gene Structure 3130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G000330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGGATCGTTTCTCAGGAGGCGATCAAGCAATTCCAAGCTTTAATGGATCAAGTTGATGAACCACTGAAGAGAACATTTCAGAATGTTCACCAAGGATTTCTAGTTGAGACTTTTGCTCGTTTTCTCAAAGCAAGAGAGTGGAATGTTGTCAAAGCCCATAAAATGTTGATGGATTGTTTAAACTGGAGGGTACAAAATGAGATTGACAGTATATTGGCCAAACCCATAATTCCAACTGAATTGTACAGAGGAGTGCGAGACTCACAGCTCATAGGCCTTTCAGGTTACTCTAGAGAGGGTATGCCAGTCTTTGCTATTGGGGTTGGGTTAAGTACATTTAATAAAGCGTCTGTTCATTACTATGTGCAGTCACACATTCAAATCAATGAATATCGAGATCGTGTTATTTTGCCGTCTGCATCGAAGAAGTATGGTAAGCCTATTACCAGGTGTGTGAAGGTTTTAGATATGACTGGGTTGAAGCTTTCAGCACTAAACCAAATTAAGTTGTTGACAATTATATCAACAGTTGATGATTTGAACTACCGAGAGAAGACAAATACGTACTGCATTGTAAATGCGCCGTACATATTCTCAGCTTGTTGGAAGGTTGTCAAGCCCCTTTTGCAGGAGAGGACAAGAAAAAAAGTACAAGTACTGTCTGGTTGTGGTACAGATGAGTTGTTGAAGATAATGGATTATGCATCTCTTCCCCATTTCTGTAAAAGGGAAGGTTCTGGATCATCTCGGCATTCACAGAATGGAACTGACAATTGCTTCTCCTTGGATCACCATTTTCATCAACAGCTCTACAACTACATCAAGCAGCAATCTTTGATCAATGAATCTGTTCAACCAATCAAGCAGGGTTCTTTTCAAGCGGACATACCTGAGCGAGCTGCAGAAGGAACACAGATGACAATAGAATCTGAGTTCAACAAATTTGGTAACGGCGATGGGGTATCTGACTCTCTAAATGCCCTCAAAATCAATGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

334

Amino Acids

37.85

Weight (kDa)

8.82

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	8 - 59	7.2e-10	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	89 - 241	5.3e-16	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47730 AT5G47730 AT5G47730 AT5G47730
fragaria_vesca	FvH4_3g00280 FvH4_3g00280 FvH4_3g00280 FvH4_4g17420
malus_domestica	MD05G1362300.v1.1 MD10G1339800.v1.1
prunus_persica	Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1 Prupe.4G003100_v2.0.a1
pyrus_communis	pycom05g32870 pycom10g28960
rosa_chinensis	RchiOBHm_Chr5g0000411
rosa_laevigata	RLG00000030864
rosa_multiflora	Rmu_co8373963.1_g000001 Rmu_sc0003949.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075750
rosa_rugosa	Rorug04G0383400
rosa_samantha	Rh5AG003300 Rh5BG004400 Rh5CG003500 Rh5DG003400
rosa_wichuraiana	Rw5G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	884
AclWI	GGATC	4 cut(s)	14, 57, 751, 798
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	944
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	8 cut(s)	195, 248, 337, 569, 590, 654, 660, 676
AfiI	CCNNNNNNNGG	1 cut(s)	631
AgsI	TTSAA	7 cut(s)	383, 484, 544, 691, 857, 881, 940
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	6 cut(s)	41, 271, 487, 602, 811, 902
AluI	AGCT	6 cut(s)	41, 271, 487, 602, 811, 902
Alw26I	GTCTC	2 cut(s)	104, 255
AlwI	GGATC	4 cut(s)	14, 57, 751, 798
AoxI	GGCC	2 cut(s)	219, 277
ApeKI	GCWGC	2 cut(s)	829, 902
ApoI	RAATTY	1 cut(s)	944
Asp700I	GAANNNNTTC	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	586
AsuHPI	GGTGA	2 cut(s)	83, 785
BalI	TGGCCA	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	2 cut(s)	841, 889
BccI	CCATC	2 cut(s)	166, 953
BceAI	ACGGC	3 cut(s)	400, 571, 970
BciT130I	CCWGG	1 cut(s)	451
BclI	TGATCA	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	104, 255
BfaI	CTAG	2 cut(s)	104, 294
BfmI	CTRYAG	1 cut(s)	903
BisI	GCNGC	2 cut(s)	830, 903
BlsI	GCNGC	2 cut(s)	831, 904
BmcAI	AGTACT	1 cut(s)	660
Bme1390I	CCNGG	1 cut(s)	451
BmrFI	CCNGG	1 cut(s)	451
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	431, 716
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	563
BpmI	CTGGAG	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	894
BsaAI	YACGTR	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	94, 786
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	3 cut(s)	191, 308, 481
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	94, 786
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMII	CTCAG	4 cut(s)	29, 612, 885, 924
BseNI	ACTGG	3 cut(s)	191, 308, 481
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	841, 889
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	221, 279
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	104, 255
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	2 cut(s)	221, 279
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
BspACI	CCGC	1 cut(s)	884
BspANI	GGCC	2 cut(s)	221, 279
BspCNI	CTCAG	4 cut(s)	28, 611, 886, 925
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	4 cut(s)	14, 57, 751, 798
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	3 cut(s)	191, 308, 481
BssECI	CCNNGG	2 cut(s)	94, 786
BssMI	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
BssT1I	CCWWGG	2 cut(s)	94, 786
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	3 cut(s)	212, 532, 663
Bst6I	CTCTTC	2 cut(s)	65, 717
BstAUI	TGTACA	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	567
BstC8I	GCNNGC	1 cut(s)	900
BstDEI	CTNAG	4 cut(s)	15, 598, 894, 933
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	7 cut(s)	9, 27, 52, 403, 746, 793, 843
BstMAI	GTCTC	2 cut(s)	104, 255
BstMBI	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNI	CCWGG	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	903
BstSNI	TACGTA	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	841, 889
BstV2I	GAAGAC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	221, 279
BtgZI	GCGATG	1 cut(s)	972
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	900
CfoI	GCGC	1 cut(s)	586
CseI	GACGC	1 cut(s)	339
CsiI	ACCWGGT	1 cut(s)	449
Csp6I	GTAC	8 cut(s)	194, 247, 336, 568, 589, 653, 659, 675
CviQI	GTAC	8 cut(s)	194, 247, 336, 568, 589, 653, 659, 675
DdeI	CTNAG	4 cut(s)	15, 598, 894, 933
DpnI	GATC	7 cut(s)	8, 26, 51, 402, 745, 792, 842
DpnII	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	65, 717
EarI	CTCTTC	2 cut(s)	65, 717
Eco105I	TACGTA	1 cut(s)	567
Eco130I	CCWWGG	2 cut(s)	94, 786
Eco147I	AGGCCT	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	94, 786
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	2 cut(s)	94, 786
FbaI	TGATCA	1 cut(s)	840
Fnu4HI	GCNGC	2 cut(s)	830, 903
Fsp4HI	GCNGC	2 cut(s)	830, 903
FspBI	CTAG	2 cut(s)	104, 294
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	2 cut(s)	830, 903
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	221, 279
HgaI	GACGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	586
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	2 cut(s)	39, 485
HinfI	GANTC	4 cut(s)	263, 848, 929, 971
HphI	GGTGA	2 cut(s)	83, 785
Hpy166II	GTNNAC	2 cut(s)	91, 516
Hpy188I	TCNGA	3 cut(s)	84, 934, 970
Hpy188III	TCNNGA	4 cut(s)	17, 294, 398, 741
Hpy8I	GTNNAC	2 cut(s)	91, 516
HpyAV	CCTTC	4 cut(s)	454, 604, 728, 902
HpyCH4III	ACNGT	3 cut(s)	212, 532, 663
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	6 cut(s)	370, 422, 573, 631, 707, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	4 cut(s)	15, 598, 894, 933
HpySE526I	ACGT	1 cut(s)	566
HspAI	GCGC	1 cut(s)	584
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
Lsp1109I	GCAGC	2 cut(s)	841, 889
LweI	GCATC	2 cut(s)	431, 716
MabI	ACCWGGT	1 cut(s)	449
MaeI	CTAG	2 cut(s)	104, 294
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	4 cut(s)	287, 372, 950, 998
MalI	GATC	7 cut(s)	8, 26, 51, 402, 745, 792, 842
MboI	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
MboII	GAAGA	5 cut(s)	82, 439, 568, 703, 704
MfeI	CAATTG	1 cut(s)	775
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	7 cut(s)	32, 231, 242, 504, 519, 775, 944
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	257, 965
MmeI	TCCRAC	2 cut(s)	260, 587
MnlI	CCTC	6 cut(s)	13, 183, 245, 292, 630, 995
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	709
MroXI	GAANNNNTTC	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	5 cut(s)	44, 182, 332, 342, 507
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	451
MssI	GTTTAAAC	1 cut(s)	183
MunI	CAATTG	1 cut(s)	775
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	451
MwoI	GCNNNNNNNGC	1 cut(s)	628
NdeII	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	2 cut(s)	372, 998
NsiI	ATGCAT	1 cut(s)	709
PceI	AGGCCT	1 cut(s)	279
PctI	GAATGC	1 cut(s)	754
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	848, 929
PkrI	GCNGC	2 cut(s)	831, 904
PleI	GAGTC	2 cut(s)	257, 965
PmeI	GTTTAAAC	1 cut(s)	183
PpsI	GAGTC	2 cut(s)	257, 965
Ppu21I	YACGTR	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	907
RsaI	GTAC	8 cut(s)	195, 248, 337, 569, 590, 654, 660, 676
RsaNI	GTAC	8 cut(s)	194, 247, 336, 568, 589, 653, 659, 675
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	5 cut(s)	44, 182, 332, 342, 507
SatI	GCNGC	2 cut(s)	830, 903
Sau3AI	GATC	7 cut(s)	6, 24, 49, 400, 743, 790, 840
ScaI	AGTACT	1 cut(s)	660
SchI	GAGTC	2 cut(s)	257, 965
ScrFI	CCNGG	1 cut(s)	451
SexAI	ACCWGGT	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	431, 716
SfcI	CTRYAG	1 cut(s)	903
SmiMI	CAYNNNNRTG	1 cut(s)	363
SnaBI	TACGTA	1 cut(s)	567
Sse9I	AATT	7 cut(s)	32, 231, 242, 504, 519, 775, 944
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	884
SspMI	CTAG	2 cut(s)	104, 294
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	449
StyI	CCWWGG	2 cut(s)	94, 786
TaaI	ACNGT	3 cut(s)	212, 532, 663
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	2 cut(s)	397, 425
TasI	AATT	7 cut(s)	32, 231, 242, 504, 519, 775, 944
TatI	WGTACW	4 cut(s)	246, 335, 652, 658
TfiI	GAWTC	2 cut(s)	848, 929
Tru1I	TTAA	5 cut(s)	44, 182, 332, 342, 507
Tru9I	TTAA	5 cut(s)	44, 182, 332, 342, 507
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	372, 998
TseI	GCWGC	2 cut(s)	829, 902
Tsp45I	GTSAC	2 cut(s)	372, 998
TspDTI	ATGAA	5 cut(s)	75, 347, 405, 791, 861
TspRI	CASTG	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	1 cut(s)	944
XbaI	TCTAGA	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	2 cut(s)	104, 294
ZrmI	AGTACT	1 cut(s)	660
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.