Rorug04G0383400

transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006021
Physical Location & Seq
Reverse (-)
55409428 .. 55410486
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0383400.1

Sequence Viewer

Length: 1059 bp
ATGAAGAATGAGGATCAAGCTAGGTTTCTCTTTGGGATATCACTCTCTGATAGGCCGGTTTGGCAACAATTCCTCATTTGTTCTTCTGGGTTCTTCTTTGGTTATCTTGTTAATGGCATTTGCGAGGAGTACGTGTACAATCGTCTCCAATTCAGCTATGGATGGTACTTCACCTTTGTACAAGGATTTGTGTACCTAGCGTTCATATACCTCCAAGGTTTCACCACCAAGAAAATGGTGAACCCATGGAGAACATATGTGAAGCTCTCCGCTGTTCTTATGGGTTCTCATGGATTGACCAAGGGATCCTTGGCTTGGCTCAATTACCCTGCCCAAATTATGTTCAAATCCACAAAGGTTCTGCCTGTGATGGTTATGGGGGCATTTATTCCTGGTCTGAGAAGGAAATACCCAATTCATGAGTACATATCCGCAATCCTCCTAGTTATTGGTCTCATCATTTTCACATTAGCAGATGCAAATACATCTCCCAATTTCAGCATATTGGGTGTGGTGATGATATCGGGCGCTCTAGTTATGGATGCCTTCATGGGGAATGTGCAAGAAGCAATCTTTACAATCAACCCTGACACCACCCAGACAGAGATGTTGTTCTGCTCAACAGTAGTTGGCTTGCCGATGCTACTTCCACCAATGATTCTTACCGGAGAACTCTTTAAGGCCTGGAATTCTTGCGCCGAGCATCCTTATGTGTATGGGGTCTTAGTGTTTGAAGCCATGGCCACATATGTTGGACAAGTATCTGTGCTATCCCTCATTGTGCTTTTTGGAGCCGCCACTACTGCTATGATAACAACGGCTAGGAAGGCGGTGACATTGTTGCTGTCGTACATGATATTTACAAAGCCATTGACGGAACAGCATGGTACAGGGCTAATGCTCATAGCCGCGGGAATCATACTGAAGATGGTGCCAGAAAACCAGGTTAACAAGCATGCAAAGTCTATCAAAGACGCCGTATTGATGATAAGCCCAAGAGCAAATGAAACAAGATTAGAAGTTGATGAGGACAATGAAGTGAACAAGGCCTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

352

Amino Acids

39.24

Weight (kDa)

8.22

Isoelectric Point (pI)

24.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UAA PF08449 23 - 311 5.1e-83 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 931
AccII CGCG 1 cut(s) 911
AciI CCGC 6 cut(s) 270, 432, 795, 830, 909, 911
AclWI GGATC 3 cut(s) 21, 300, 313
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 1 cut(s) 688
AcuI CTGAAG 1 cut(s) 944
AcyI GRCGYC 1 cut(s) 975
AfaI GTAC 8 cut(s) 131, 137, 167, 180, 194, 425, 851, 889
AfiI CCNNNNNNNGG 2 cut(s) 315, 552
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 2 cut(s) 346, 734
AjnI CCWGG 3 cut(s) 391, 683, 942
AjuI GAANNNNNNNTTGG 1 cut(s) 1034
AluBI AGCT 3 cut(s) 20, 156, 265
AluI AGCT 3 cut(s) 20, 156, 265
Alw26I GTCTC 2 cut(s) 149, 458
AlwI GGATC 3 cut(s) 21, 300, 313
AoxI GGCC 4 cut(s) 53, 681, 741, 1047
ApoI RAATTY 1 cut(s) 688
AspLEI GCGC 2 cut(s) 530, 698
AsuHPI GGTGA 5 cut(s) 163, 214, 250, 526, 844
BalI TGGCCA 1 cut(s) 743
BamHI GGATCC 1 cut(s) 305
BanI GGYRCC 1 cut(s) 931
BccI CCATC 3 cut(s) 156, 364, 922
BceAI ACGGC 2 cut(s) 834, 962
BciT130I CCWGG 3 cut(s) 393, 685, 944
BcoDI GTCTC 2 cut(s) 149, 458
BfaI CTAG 5 cut(s) 21, 197, 443, 533, 822
BfoI RGCGCY 1 cut(s) 531
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 2 cut(s) 795, 909
BlsI GCNGC 2 cut(s) 796, 910
Bme1390I CCNGG 3 cut(s) 393, 685, 944
BmiI GGNNCC 3 cut(s) 307, 793, 933
BmrFI CCNGG 3 cut(s) 393, 685, 944
BmsI GCATC 4 cut(s) 466, 532, 630, 712
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 975
BsaI GGTCTC 1 cut(s) 458
BsaJI CCNNGG 7 cut(s) 214, 245, 300, 309, 738, 909, 1050
BsaWI WCCGGW 1 cut(s) 665
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 552
Bse118I RCCGGY 1 cut(s) 55
BseBI CCWGG 3 cut(s) 393, 685, 944
BseDI CCNNGG 7 cut(s) 214, 245, 300, 309, 738, 909, 1050
BseGI GGATG 3 cut(s) 167, 547, 703
BseLI CCNNNNNNNGG 2 cut(s) 315, 552
BseMII CTCAG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 911
BshFI GGCC 4 cut(s) 55, 683, 743, 1049
BshNI GGYRCC 1 cut(s) 931
BsiSI CCGG 2 cut(s) 56, 666
BslI CCNNNNNNNGG 2 cut(s) 315, 552
BsmAI GTCTC 2 cut(s) 149, 458
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 4 cut(s) 55, 683, 743, 1049
Bso31I GGTCTC 1 cut(s) 458
Bsp1407I TGTACA 2 cut(s) 135, 178
Bsp143I GATC 2 cut(s) 13, 305
Bsp19I CCATGG 2 cut(s) 245, 738
BspACI CCGC 6 cut(s) 270, 432, 795, 830, 909, 911
BspANI GGCC 4 cut(s) 55, 683, 743, 1049
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 1 cut(s) 911
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 307, 793, 933
BspPI GGATC 3 cut(s) 21, 300, 313
BspT107I GGYRCC 1 cut(s) 931
BspTNI GGTCTC 1 cut(s) 458
BsrFI RCCGGY 1 cut(s) 55
BsrGI TGTACA 2 cut(s) 135, 178
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 7 cut(s) 214, 245, 300, 309, 738, 909, 1050
BssMI GATC 2 cut(s) 13, 305
BssNI GRCGYC 1 cut(s) 975
BssT1I CCWWGG 6 cut(s) 214, 245, 300, 309, 738, 1050
Bst2UI CCWGG 3 cut(s) 393, 685, 944
Bst4CI ACNGT 1 cut(s) 625
BstACI GRCGYC 1 cut(s) 975
BstAUI TGTACA 2 cut(s) 135, 178
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 635, 957
BstDEI CTNAG 2 cut(s) 398, 724
BstDSI CCRYGG 3 cut(s) 245, 738, 909
BstF5I GGATG 3 cut(s) 167, 547, 703
BstFNI CGCG 1 cut(s) 911
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 2 cut(s) 530, 698
BstKTI GATC 2 cut(s) 16, 308
BstMAI GTCTC 2 cut(s) 149, 458
BstMBI GATC 2 cut(s) 13, 305
BstMWI GCNNNNNNNGC 3 cut(s) 61, 803, 827
BstNI CCWGG 3 cut(s) 393, 685, 944
BstNSI RCATGY 1 cut(s) 959
BstSCI CCNGG 3 cut(s) 391, 683, 942
BstUI CGCG 1 cut(s) 911
BstX2I RGATCY 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 4 cut(s) 55, 683, 743, 1049
BtgI CCRYGG 3 cut(s) 245, 738, 909
BtsCI GGATG 3 cut(s) 167, 547, 703
Cac8I GCNNGC 2 cut(s) 635, 957
CciI TCATGA 1 cut(s) 418
CfoI GCGC 2 cut(s) 530, 698
Cfr10I RCCGGY 1 cut(s) 55
Cfr42I CCGCGG 1 cut(s) 912
CseI GACGC 1 cut(s) 983
CsiI ACCWGGT 1 cut(s) 942
Csp6I GTAC 8 cut(s) 130, 136, 166, 179, 193, 424, 850, 888
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 8 cut(s) 246, 290, 419, 550, 739, 853, 884, 956
CviQI GTAC 8 cut(s) 130, 136, 166, 179, 193, 424, 850, 888
DdeI CTNAG 2 cut(s) 398, 724
DpnI GATC 2 cut(s) 15, 307
DpnII GATC 2 cut(s) 13, 305
EaeI YGGCCR 1 cut(s) 741
Eco130I CCWWGG 6 cut(s) 214, 245, 300, 309, 738, 1050
Eco147I AGGCCT 2 cut(s) 683, 1049
Eco31I GGTCTC 1 cut(s) 458
Eco32I GATATC 2 cut(s) 39, 522
Eco57I CTGAAG 1 cut(s) 944
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 3 cut(s) 391, 683, 942
EcoRV GATATC 2 cut(s) 39, 522
EcoT14I CCWWGG 6 cut(s) 214, 245, 300, 309, 738, 1050
ErhI CCWWGG 6 cut(s) 214, 245, 300, 309, 738, 1050
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 8 cut(s) 249, 293, 422, 553, 742, 856, 887, 959
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 8 cut(s) 245, 289, 418, 549, 738, 852, 883, 955
FauI CCCGC 1 cut(s) 904
FauNDI CATATG 2 cut(s) 256, 748
Fnu4HI GCNGC 2 cut(s) 795, 909
FokI GGATG 3 cut(s) 174, 554, 690
Fsp4HI GCNGC 2 cut(s) 795, 909
FspBI CTAG 5 cut(s) 21, 197, 443, 533, 822
GlaI GCGC 2 cut(s) 529, 697
GluI GCNGC 2 cut(s) 795, 909
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 4 cut(s) 55, 683, 743, 1049
HapII CCGG 2 cut(s) 56, 666
HgaI GACGC 1 cut(s) 983
HhaI GCGC 2 cut(s) 530, 698
Hin1I GRCGYC 1 cut(s) 975
Hin1II CATG 8 cut(s) 249, 293, 422, 553, 742, 856, 887, 959
Hin6I GCGC 2 cut(s) 528, 696
HinP1I GCGC 2 cut(s) 528, 696
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HinfI GANTC 2 cut(s) 658, 915
HpaI GTTAAC 1 cut(s) 949
HpaII CCGG 2 cut(s) 56, 666
HphI GGTGA 5 cut(s) 163, 214, 250, 526, 844
Hpy166II GTNNAC 5 cut(s) 136, 193, 241, 949, 1042
Hpy188I TCNGA 2 cut(s) 49, 399
Hpy188III TCNNGA 1 cut(s) 419
Hpy8I GTNNAC 5 cut(s) 136, 193, 241, 949, 1042
HpyAV CCTTC 3 cut(s) 396, 556, 820
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 479, 562, 959
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 803, 827
HpyF3I CTNAG 2 cut(s) 398, 724
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 975
Hsp92II CATG 8 cut(s) 249, 293, 422, 553, 742, 856, 887, 959
HspAI GCGC 2 cut(s) 528, 696
KspAI GTTAAC 1 cut(s) 949
KspI CCGCGG 1 cut(s) 912
Kzo9I GATC 2 cut(s) 13, 305
LmnI GCTCC 1 cut(s) 791
LweI GCATC 4 cut(s) 466, 532, 630, 712
MabI ACCWGGT 1 cut(s) 942
MaeI CTAG 5 cut(s) 21, 197, 443, 533, 822
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 832
MalI GATC 2 cut(s) 15, 307
MboI GATC 2 cut(s) 13, 305
MboII GAAGA 4 cut(s) 16, 75, 85, 937
MflI RGATCY 1 cut(s) 305
MlsI TGGCCA 1 cut(s) 743
MluCI AATT 7 cut(s) 68, 149, 322, 336, 414, 493, 688
MluNI TGGCCA 1 cut(s) 743
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 7 cut(s) 4, 83, 118, 221, 449, 785, 1021
Mox20I TGGCCA 1 cut(s) 743
MscI TGGCCA 1 cut(s) 743
MseI TTAA 3 cut(s) 111, 678, 948
MslI CAYNNNNRTG 1 cut(s) 708
Msp20I TGGCCA 1 cut(s) 743
MspA1I CMGCKG 2 cut(s) 272, 911
MspI CCGG 2 cut(s) 56, 666
MspR9I CCNGG 3 cut(s) 393, 685, 944
MvaI CCWGG 3 cut(s) 393, 685, 944
MvnI CGCG 1 cut(s) 911
MwoI GCNNNNNNNGC 3 cut(s) 61, 803, 827
NcoI CCATGG 2 cut(s) 245, 738
NdeI CATATG 2 cut(s) 256, 748
NdeII GATC 2 cut(s) 13, 305
NlaIII CATG 8 cut(s) 249, 293, 422, 553, 742, 856, 887, 959
NlaIV GGNNCC 3 cut(s) 307, 793, 933
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 1 cut(s) 832
NspI RCATGY 1 cut(s) 959
PaeI GCATGC 1 cut(s) 959
PagI TCATGA 1 cut(s) 418
PceI AGGCCT 2 cut(s) 683, 1049
PfeI GAWTC 2 cut(s) 658, 915
PkrI GCNGC 2 cut(s) 796, 910
Ppu21I YACGTR 1 cut(s) 133
Psp6I CCWGG 3 cut(s) 391, 683, 942
PspGI CCWGG 3 cut(s) 391, 683, 942
PspN4I GGNNCC 3 cut(s) 307, 793, 933
PsrI GAACNNNNNNTAC 2 cut(s) 185, 217
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 8 cut(s) 131, 137, 167, 180, 194, 425, 851, 889
RsaNI GTAC 8 cut(s) 130, 136, 166, 179, 193, 424, 850, 888
RseI CAYNNNNRTG 1 cut(s) 708
SacII CCGCGG 1 cut(s) 912
SaqAI TTAA 3 cut(s) 111, 678, 948
SatI GCNGC 2 cut(s) 795, 909
Sau3AI GATC 2 cut(s) 13, 305
ScrFI CCNGG 3 cut(s) 393, 685, 944
SexAI ACCWGGT 1 cut(s) 942
SfaNI GCATC 4 cut(s) 466, 532, 630, 712
Sfr303I CCGCGG 1 cut(s) 912
SgrBI CCGCGG 1 cut(s) 912
SmiMI CAYNNNNRTG 1 cut(s) 708
SphI GCATGC 1 cut(s) 959
Sse9I AATT 7 cut(s) 68, 149, 322, 336, 414, 493, 688
SseBI AGGCCT 2 cut(s) 683, 1049
SsiI CCGC 6 cut(s) 270, 432, 795, 830, 909, 911
SspMI CTAG 5 cut(s) 21, 197, 443, 533, 822
StuI AGGCCT 2 cut(s) 683, 1049
StyD4I CCNGG 3 cut(s) 391, 683, 942
StyI CCWWGG 6 cut(s) 214, 245, 300, 309, 738, 1050
TaaI ACNGT 1 cut(s) 625
TaiI ACGT 1 cut(s) 135
TasI AATT 7 cut(s) 68, 149, 322, 336, 414, 493, 688
TatI WGTACW 3 cut(s) 135, 178, 423
TauI GCSGC 2 cut(s) 797, 911
TfiI GAWTC 2 cut(s) 658, 915
Tru1I TTAA 3 cut(s) 111, 678, 948
Tru9I TTAA 3 cut(s) 111, 678, 948
TseFI GTSAC 1 cut(s) 832
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 6 cut(s) 17, 193, 407, 538, 1020, 1050
TspGWI ACGGA 1 cut(s) 890
XapI RAATTY 1 cut(s) 688
XceI RCATGY 1 cut(s) 959
XcmI CCANNNNNNNNNTGG 3 cut(s) 155, 232, 307
XspI CTAG 5 cut(s) 21, 197, 443, 533, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.