Rmu_sc0003949.1_g000001

transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003949.1
OG0006021
Physical Location & Seq
Forward (+)
1 .. 1246
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003949.1_g000001.1.cds

Sequence Viewer

Length: 393 bp
gttgtcaagccccttttgcaggagaggacaagaaaaaaagtacaagtactgtctggttgtggtacagatgagttgttgaagataatggattatgcatctcttccccatttctgtaaaagggaaggttctggatcatctcggcattcacagaatggaactgacaattgcttctccttggatcaccattttcatcaacagctctacaactacatcaagcagcaatctttgatcaatgaatctgttcaaccaatcaagcagggttcttttcaagcggacatacctgagcgagctgcagaaggaacacagatgacaatagaatctgagttcaacaaatttggtaacggcgatggggtatctgactctctaaatgccctcaaaatcaatggtgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

130

Amino Acids

14.5

Weight (kDa)

6.21

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AclWI GGATC 2 cut(s) 139, 186
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 3 cut(s) 42, 48, 64
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 4 cut(s) 79, 245, 269, 328
AluBI AGCT 2 cut(s) 199, 290
AluI AGCT 2 cut(s) 199, 290
AlwI GGATC 2 cut(s) 139, 186
ApeKI GCWGC 2 cut(s) 217, 290
ApoI RAATTY 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 173
BbvI GCAGC 2 cut(s) 229, 277
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 358
BclI TGATCA 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 291
BisI GCNGC 2 cut(s) 218, 291
BlsI GCNGC 2 cut(s) 219, 292
BmcAI AGTACT 1 cut(s) 48
BmsI GCATC 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 273, 312
BseXI GCAGC 2 cut(s) 229, 277
BslI CCNNNNNNNGG 1 cut(s) 19
BsmI GAATGC 1 cut(s) 142
Bsp143I GATC 3 cut(s) 131, 178, 228
BspACI CCGC 1 cut(s) 272
BspCNI CTCAG 2 cut(s) 274, 313
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 2 cut(s) 139, 186
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 3 cut(s) 131, 178, 228
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 282, 321
BstENI CCTNNNNNAGG 1 cut(s) 17
BstKTI GATC 3 cut(s) 134, 181, 231
BstMBI GATC 3 cut(s) 131, 178, 228
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 229, 277
BtgZI GCGATG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 288
Csp6I GTAC 3 cut(s) 41, 47, 63
CviJI RGCY 3 cut(s) 10, 199, 290
CviKI_1 RGCY 3 cut(s) 10, 199, 290
CviQI GTAC 3 cut(s) 41, 47, 63
DdeI CTNAG 2 cut(s) 282, 321
DpnI GATC 3 cut(s) 133, 180, 230
DpnII GATC 3 cut(s) 131, 178, 228
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 174
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 174
FaiI YATR 2 cut(s) 93, 278
FbaI TGATCA 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 218, 291
Fsp4HI GCNGC 2 cut(s) 218, 291
GluI GCNGC 2 cut(s) 218, 291
HinfI GANTC 3 cut(s) 236, 317, 359
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 322, 358
Hpy188III TCNNGA 1 cut(s) 129
HpyAV CCTTC 2 cut(s) 116, 290
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 19, 95, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 282, 321
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 3 cut(s) 131, 178, 228
LpnPI CCDG 5 cut(s) 5, 39, 114, 242, 294
Lsp1109I GCAGC 2 cut(s) 229, 277
LweI GCATC 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 338, 386
MalI GATC 3 cut(s) 133, 180, 230
MboI GATC 3 cut(s) 131, 178, 228
MboII GAAGA 2 cut(s) 91, 92
MfeI CAATTG 1 cut(s) 163
MluCI AATT 2 cut(s) 163, 332
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 2 cut(s) 18, 383
Mph1103I ATGCAT 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 240
MunI CAATTG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 3 cut(s) 131, 178, 228
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 97
PctI GAATGC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 236, 317
PkrI GCNGC 2 cut(s) 219, 292
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 295
RsaI GTAC 3 cut(s) 42, 48, 64
RsaNI GTAC 3 cut(s) 41, 47, 63
SatI GCNGC 2 cut(s) 218, 291
Sau3AI GATC 3 cut(s) 131, 178, 228
ScaI AGTACT 1 cut(s) 48
SchI GAGTC 1 cut(s) 353
SetI ASST 4 cut(s) 127, 201, 283, 292
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 163, 332
SsiI CCGC 1 cut(s) 272
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 51
TasI AATT 2 cut(s) 163, 332
TatI WGTACW 2 cut(s) 40, 46
TfiI GAWTC 2 cut(s) 236, 317
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 217, 290
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 179, 249
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 240
ZrmI AGTACT 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.