Rh5CG003500

transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006021
Physical Location & Seq
Forward (+)
259383 .. 262602
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG003500.1

Sequence Viewer

Length: 702 bp
ATGCCAGTCTTTGCTATTGGGGTTGGTTTAAGTACATTTAATAAAGCGTCTGTTCATTACTATGTGCAGTCACACATTCAAATCAATGAATATCGAGATCGTGTTATTTTGCCGTCTGCATCGAAGAAGTATGGTAAGCCTATTACCACGTGTGTGAAGGTTTTAGATATGACTGGGTTGAAGCTTTCAGCACTAAACCAAATTAAGTTGTTGACAATTATATCCACAGTTGATGATTTGAACTACCCAGAGAAGACAAATACGTACTACATTGTAAATGTGCCTTACATATTCTCAGCCTGTTGGAAGGTTGTCAAGCCCCTTTTGCAGGAGAGGACAAGGAAAAAAGTACAAGTATTGTCTGGTTGTGGTACAGATGAGTTGTTGAAGATAATGGATTATGCATCTCTTCCCCATTTCTGTAAAAGGGAAGGTTCTGGATCATCTCGGCATTCACAGAATGGAACTGACAATTGCTTCTCCTTGGATGACCGTTTTCATCAACAGCTCTACAACTACATCAAGCAGCAATCTTTGATCAATGAATCCGTTCAACCAATCAAGCAGGGTTCTTTTCATGTGGACATACCTGAGCGAGCTGCAGAAGGAACACAGATAACAATAGAATCTGAGTTCAACAAGTTTGGTAACGGCAATGGGGTATCTGATTCTCTAAATGCCCTCAAAATCAATGGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

233

Amino Acids

26.16

Weight (kDa)

8.7

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 43 - 140 9.2e-17 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 448
AcvI CACGTG 1 cut(s) 150
AfaI GTAC 4 cut(s) 34, 266, 351, 373
AfiI CCNNNNNNNGG 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 149
AgsI TTSAA 6 cut(s) 80, 181, 241, 388, 554, 637
AleI CACNNNNGTG 1 cut(s) 152
AluBI AGCT 3 cut(s) 184, 508, 599
AluI AGCT 3 cut(s) 184, 508, 599
AlwI GGATC 1 cut(s) 448
ApeKI GCWGC 2 cut(s) 526, 599
Asp700I GAANNNNTTC 1 cut(s) 549
BbrPI CACGTG 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 538, 586
BceAI ACGGC 2 cut(s) 97, 667
BclI TGATCA 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 600
BisI GCNGC 2 cut(s) 527, 600
BlsI GCNGC 2 cut(s) 528, 601
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 128, 413
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 591
BsaAI YACGTR 2 cut(s) 150, 264
BsaJI CCNNGG 1 cut(s) 483
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 2 cut(s) 5, 178
Bse3DI GCAATG 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 3 cut(s) 309, 582, 621
BseNI ACTGG 2 cut(s) 5, 178
BseXI GCAGC 2 cut(s) 538, 586
BsgI GTGCAG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 328
BsmI GAATGC 1 cut(s) 451
Bsp143I GATC 3 cut(s) 97, 440, 537
BspCNI CTCAG 3 cut(s) 308, 583, 622
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 2 cut(s) 5, 178
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 3 cut(s) 97, 440, 537
BssT1I CCWWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 229, 494
Bst6I CTCTTC 1 cut(s) 414
BstBAI YACGTR 2 cut(s) 150, 264
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 3 cut(s) 295, 591, 630
BstENI CCTNNNNNAGG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 493
BstKTI GATC 3 cut(s) 100, 443, 540
BstMBI GATC 3 cut(s) 97, 440, 537
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 600
BstSNI TACGTA 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 538, 586
BstV2I GAAGAC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 597
CseI GACGC 1 cut(s) 36
Csp6I GTAC 4 cut(s) 33, 265, 350, 372
CviAII CATG 1 cut(s) 578
CviJI RGCY 6 cut(s) 139, 184, 299, 319, 508, 599
CviKI_1 RGCY 6 cut(s) 139, 184, 299, 319, 508, 599
CviQI GTAC 4 cut(s) 33, 265, 350, 372
DdeI CTNAG 3 cut(s) 295, 591, 630
DpnI GATC 3 cut(s) 99, 442, 539
DpnII GATC 3 cut(s) 97, 440, 537
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco105I TACGTA 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 483
Eco72I CACGTG 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 483
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 1 cut(s) 581
FaiI YATR 8 cut(s) 63, 132, 170, 221, 290, 402, 579, 587
FatI CATG 1 cut(s) 577
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 2 cut(s) 527, 600
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 2 cut(s) 527, 600
GluI GCNGC 2 cut(s) 527, 600
HgaI GACGC 1 cut(s) 36
Hin1II CATG 1 cut(s) 581
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 3 cut(s) 545, 626, 668
Hpy166II GTNNAC 2 cut(s) 213, 583
Hpy188I TCNGA 2 cut(s) 631, 667
Hpy188III TCNNGA 2 cut(s) 95, 438
Hpy8I GTNNAC 2 cut(s) 213, 583
HpyAV CCTTC 4 cut(s) 151, 301, 425, 599
HpyCH4III ACNGT 2 cut(s) 229, 494
HpyCH4IV ACGT 2 cut(s) 149, 263
HpyCH4V TGCA 5 cut(s) 67, 119, 328, 404, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 3 cut(s) 295, 591, 630
HpySE526I ACGT 2 cut(s) 149, 263
Hsp92II CATG 1 cut(s) 581
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 3 cut(s) 97, 440, 537
LpnPI CCDG 9 cut(s) 18, 159, 261, 313, 314, 348, 423, 551, 603
Lsp1109I GCAGC 2 cut(s) 538, 586
LweI GCATC 2 cut(s) 128, 413
MaeII ACGT 2 cut(s) 149, 263
MaeIII GTNAC 3 cut(s) 69, 647, 695
MalI GATC 3 cut(s) 99, 442, 539
MboI GATC 3 cut(s) 97, 440, 537
MboII GAAGA 4 cut(s) 136, 265, 400, 401
MfeI CAATTG 1 cut(s) 472
MluCI AATT 3 cut(s) 201, 216, 472
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 2 cut(s) 327, 692
Mph1103I ATGCAT 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 3 cut(s) 29, 39, 204
MslI CAYNNNNRTG 2 cut(s) 60, 152
MunI CAATTG 1 cut(s) 472
Mva1269I GAATGC 1 cut(s) 451
MwoI GCNNNNNNNGC 1 cut(s) 325
NdeII GATC 3 cut(s) 97, 440, 537
NlaIII CATG 1 cut(s) 581
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 69, 695
NsiI ATGCAT 1 cut(s) 406
OliI CACNNNNGTG 1 cut(s) 152
PctI GAATGC 1 cut(s) 451
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 3 cut(s) 545, 626, 668
PkrI GCNGC 2 cut(s) 528, 601
PmaCI CACGTG 1 cut(s) 150
PmlI CACGTG 1 cut(s) 150
Ppu21I YACGTR 2 cut(s) 150, 264
PspCI CACGTG 1 cut(s) 150
PstI CTGCAG 1 cut(s) 604
RsaI GTAC 4 cut(s) 34, 266, 351, 373
RsaNI GTAC 4 cut(s) 33, 265, 350, 372
RseI CAYNNNNRTG 2 cut(s) 60, 152
SaqAI TTAA 3 cut(s) 29, 39, 204
SatI GCNGC 2 cut(s) 527, 600
Sau3AI GATC 3 cut(s) 97, 440, 537
SetI ASST 9 cut(s) 152, 162, 186, 266, 312, 436, 510, 592, 601
SfaNI GCATC 2 cut(s) 128, 413
SfcI CTRYAG 1 cut(s) 600
SmiMI CAYNNNNRTG 2 cut(s) 60, 152
SnaBI TACGTA 1 cut(s) 264
Sse9I AATT 3 cut(s) 201, 216, 472
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 229, 494
TaiI ACGT 2 cut(s) 152, 266
TaqI TCGA 2 cut(s) 94, 122
TasI AATT 3 cut(s) 201, 216, 472
TatI WGTACW 2 cut(s) 32, 349
TfiI GAWTC 3 cut(s) 545, 626, 668
Tru1I TTAA 3 cut(s) 29, 39, 204
Tru9I TTAA 3 cut(s) 29, 39, 204
TseFI GTSAC 2 cut(s) 69, 695
TseI GCWGC 2 cut(s) 526, 599
Tsp45I GTSAC 2 cut(s) 69, 695
TspDTI ATGAA 5 cut(s) 44, 102, 488, 558, 566
TspGWI ACGGA 1 cut(s) 538
XagI CCTNNNNNAGG 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.