FvH4_3g02720

NDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006390
Physical Location & Seq
Forward (+)
1383480 .. 1384064
585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02720.t1

Sequence Viewer

Length: 585 bp
ATGAGTGAAAGTGAAAACAAGCATTTCTATTTGTGTGTCTTAGAAATTTTTGCCCTTTTGGGTCTTCTGGCCTTAGTTCTTTGGCTCAGTTTACGCCCGAAGTCCCCTAGTTATACCATTGTGGATATCACCATTCCAAGCTCTGGTTTAGAGAACGGGGAACAGAATGGCTCTATTGTTTATATTCTTGAAATTGAAAACTCTAACAAAGACTCCAGTATCTTTTATGATACCTCAGTCTTGACGTTCTATTATGGGCAGGACAAAGTTGCAGAGAAAACCATACCTCCTTTTCATCAAGGAAGACGCAAAACCCGTTCAGAGTTGGGTGATATGGATGCCAATCCACAGGTGTGGAGAGCTGTTCGCAAGTCAATATCGAATGCAACTGTAGAATTCAAGGTGACTTTGCTAACTAAGATCCGATACAAAACATGGGGAATCAAGAGTAAGCGACATGGGCAAGACTTGCAAGGTACAATACCAATAGGTAAAGACGGCAAGCTTTCTGGTAAGAAGAAGAAAATCAAGCTAAGCCATGCTTCCAAGAAGCTGAGGAGGAATAGTCTTCGGTTATTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

195

Amino Acids

22.0

Weight (kDa)

9.82

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 63 - 153 1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AclWI GGATC 1 cut(s) 415
AcsI RAATTY 2 cut(s) 45, 395
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 3 cut(s) 191, 197, 400
AleI CACNNNNGTG 1 cut(s) 352
AluBI AGCT 5 cut(s) 141, 362, 505, 532, 553
AluI AGCT 5 cut(s) 141, 362, 505, 532, 553
AlwI GGATC 1 cut(s) 415
AoxI GGCC 1 cut(s) 69
ApoI RAATTY 2 cut(s) 45, 395
AsuHPI GGTGA 3 cut(s) 121, 341, 415
BaeI ACNNNNGTAYC 4 cut(s) 202, 222, 235, 255
BbsI GAAGAC 3 cut(s) 56, 310, 560
BbvCI CCTCAGC 1 cut(s) 554
BceAI ACGGC 1 cut(s) 514
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 390
BlpI GCTNAGC 1 cut(s) 533
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 3 cut(s) 56, 310, 560
BpmI CTGGAG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 554
Bpu1102I GCTNAGC 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 342
BsaXI ACNNNNNCTCC 6 cut(s) 197, 227, 271, 301, 550, 580
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 342
BseGI GGATG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 3 cut(s) 100, 249, 545
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 571
BshFI GGCC 1 cut(s) 71
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 420
Bsp1720I GCTNAGC 1 cut(s) 533
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 3 cut(s) 99, 248, 546
BspPI GGATC 1 cut(s) 415
BsrI ACTGG 1 cut(s) 216
BssMI GATC 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 391
BstAPI GCANNNNNTGC 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 7 cut(s) 40, 73, 86, 235, 417, 533, 554
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 423
BstMBI GATC 1 cut(s) 420
BstMWI GCNNNNNNNGC 2 cut(s) 460, 469
BstSFI CTRYAG 1 cut(s) 390
BstV2I GAAGAC 3 cut(s) 56, 310, 560
BstX2I RGATCY 1 cut(s) 420
BstXI CCANNNNNNTGG 1 cut(s) 354
BstYI RGATCY 1 cut(s) 420
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 503
CseI GACGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 477
CviAII CATG 3 cut(s) 435, 458, 539
CviJI RGCY 9 cut(s) 71, 85, 141, 171, 362, 505, 532, 537, 553
CviKI_1 RGCY 9 cut(s) 71, 85, 141, 171, 362, 505, 532, 537, 553
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 7 cut(s) 40, 73, 86, 235, 417, 533, 554
DpnI GATC 1 cut(s) 422
DpnII GATC 1 cut(s) 420
Eco32I GATATC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 395
EcoRV GATATC 1 cut(s) 127
FaeI CATG 3 cut(s) 438, 461, 542
FaiI YATR 9 cut(s) 114, 183, 228, 255, 284, 335, 436, 459, 540
FalI AAGNNNNNCTT 2 cut(s) 526, 558
FaqI GGGAC 1 cut(s) 88
FatI CATG 3 cut(s) 434, 457, 538
FokI GGATG 1 cut(s) 350
FspBI CTAG 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 199
HaeIII GGCC 1 cut(s) 71
HgaI GACGC 1 cut(s) 315
Hin1II CATG 3 cut(s) 438, 461, 542
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 2 cut(s) 212, 441
HphI GGTGA 3 cut(s) 121, 341, 415
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 2 cut(s) 322, 425
Hpy188III TCNNGA 3 cut(s) 188, 241, 445
Hpy8I GTNNAC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 272, 386, 472
HpyF10VI GCNNNNNNNGC 2 cut(s) 460, 469
HpyF3I CTNAG 7 cut(s) 40, 73, 86, 235, 417, 533, 554
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 3 cut(s) 438, 461, 542
Kzo9I GATC 1 cut(s) 420
LpnPI CCDG 6 cut(s) 53, 129, 229, 245, 335, 495
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 403
MalI GATC 1 cut(s) 422
MboI GATC 1 cut(s) 420
MboII GAAGA 5 cut(s) 56, 315, 529, 532, 560
MflI RGATCY 1 cut(s) 420
MluCI AATT 3 cut(s) 45, 192, 395
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 4 cut(s) 244, 297, 549, 552
MseI TTAA 1 cut(s) 583
MslI CAYNNNNRTG 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 388
MwoI GCNNNNNNNGC 2 cut(s) 460, 469
NdeII GATC 1 cut(s) 420
NlaIII CATG 3 cut(s) 438, 461, 542
NmuCI GTSAC 1 cut(s) 403
OliI CACNNNNGTG 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 1 cut(s) 441
PflMI CCANNNNNTGG 1 cut(s) 143
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
RseI CAYNNNNRTG 1 cut(s) 352
SaqAI TTAA 1 cut(s) 583
Sau3AI GATC 1 cut(s) 420
SchI GAGTC 1 cut(s) 206
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 352
Sse9I AATT 3 cut(s) 45, 192, 395
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 380
TasI AATT 3 cut(s) 45, 192, 395
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 1 cut(s) 583
Tru9I TTAA 1 cut(s) 583
TseFI GTSAC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 143
XapI RAATTY 2 cut(s) 45, 395
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.