Rh5DG036100

NDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006390
Physical Location & Seq
Forward (+)
2536165 .. 2537680
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG036100.1

Sequence Viewer

Length: 690 bp
ATGGCGATTAGAAATTCCATATTGAATGGAACTGCAGAACTGAAGGGGGCTTTACGAACTCAGCTTCAATACAAAACCTTGGGAAGAAACAGCAAGCATCATGGGGTAAACTTGCAAGCTGTATTACCAATAGGGCCAGATTGTAAGATTTCTGAAATTTTGGCCCTTTTGGGTCTTCTGGCCTTAGTTCTTTGGCTAAGTTTACGCCCAAAGTCCCCTTGTTATACCATTGTGGATATCACCATTCCAAATTCTGATATAGAGAATGGGGCACAGAATGGCTCTATTGTGTATGTTCTTGAGATTGAAAACTCTAACAAAGACTCCAGTATTTTTTATGATACCTTAGTCTTGACGTTCTATTATGGGCAGGATAAAGTTGCAGAGAAAACCATACCTCCTTTTCATCAAGGAAGAAGCAAAACCCGTACGGTGATGGATGATATTGATGCCAATCCACAGGTGTGGAGATCTGTTCGCAATTCAATATCGAATGCAACTGCAGAGTTGAAGGTGACTTTGCTAACTAAGATTAGATACAAAACATGGGGAATCAAGAGTAAGCGTCACGGGCAAGACTTGCAAGGTGCATTACCAATAGGTAAAGACGGCAAGCTTTCTGGTAAGAAGAAGAAAATCAAGCTAAGCCATGCTTCCAAGAAACTGAGGAGGAATAGTCTTAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

229

Amino Acids

25.54

Weight (kDa)

10.0

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 100 - 190 3.5e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 13, 156, 250
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 1 cut(s) 430
AgsI TTSAA 5 cut(s) 25, 68, 308, 486, 511
AleI CACNNNNGTG 1 cut(s) 463
AluBI AGCT 4 cut(s) 64, 119, 616, 643
AluI AGCT 4 cut(s) 64, 119, 616, 643
AoxI GGCC 3 cut(s) 134, 162, 180
ApoI RAATTY 3 cut(s) 13, 156, 250
AspS9I GGNCC 2 cut(s) 134, 163
AsuHPI GGTGA 3 cut(s) 232, 445, 526
BaeGI GKGCMC 1 cut(s) 274
BaeI ACNNNNGTAYC 2 cut(s) 333, 366
BbsI GAAGAC 1 cut(s) 167
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 625
BfmI CTRYAG 2 cut(s) 33, 501
BglII AGATCT 1 cut(s) 470
BlpI GCTNAGC 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 134, 163
BmsI GCATC 2 cut(s) 106, 439
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 310
Bpu1102I GCTNAGC 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 5 cut(s) 308, 338, 382, 412, 661
Bse1I ACTGG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 445
BseJI GATNNNNATC 1 cut(s) 453
BseMII CTCAG 2 cut(s) 74, 656
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 682
BseSI GKGCMC 1 cut(s) 274
BshFI GGCC 3 cut(s) 136, 164, 182
BsiWI CGTACG 1 cut(s) 428
BslFI GGGAC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 3 cut(s) 136, 164, 182
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 1 cut(s) 470
Bsp1720I GCTNAGC 1 cut(s) 644
BspANI GGCC 3 cut(s) 136, 164, 182
BspCNI CTCAG 2 cut(s) 73, 657
BspMAI CTGCAG 2 cut(s) 37, 505
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 433
BstAPI GCANNNNNTGC 1 cut(s) 580
BstC8I GCNNGC 3 cut(s) 95, 117, 614
BstDEI CTNAG 8 cut(s) 60, 184, 197, 346, 528, 644, 665, 680
BstF5I GGATG 1 cut(s) 445
BstKTI GATC 1 cut(s) 473
BstMBI GATC 1 cut(s) 470
BstMWI GCNNNNNNNGC 2 cut(s) 571, 580
BstSFI CTRYAG 2 cut(s) 33, 501
BstSLI GKGCMC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 470
BstXI CCANNNNNNTGG 1 cut(s) 465
BstYI RGATCY 1 cut(s) 470
BsuRI GGCC 3 cut(s) 136, 164, 182
BtsCI GGATG 1 cut(s) 445
Cac8I GCNNGC 3 cut(s) 95, 117, 614
Cfr13I GGNCC 2 cut(s) 134, 163
CseI GACGC 1 cut(s) 554
Csp6I GTAC 1 cut(s) 429
CviAII CATG 3 cut(s) 101, 546, 650
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 8 cut(s) 60, 184, 197, 346, 528, 644, 665, 680
DpnI GATC 1 cut(s) 472
DpnII GATC 1 cut(s) 470
Eco130I CCWWGG 1 cut(s) 78
Eco32I GATATC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 62
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 3 cut(s) 104, 549, 653
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FaqI GGGAC 1 cut(s) 199
FatI CATG 3 cut(s) 100, 545, 649
FokI GGATG 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 3 cut(s) 136, 164, 182
HgaI GACGC 1 cut(s) 554
Hin1II CATG 3 cut(s) 104, 549, 653
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 2 cut(s) 323, 552
HphI GGTGA 3 cut(s) 232, 445, 526
Hpy166II GTNNAC 2 cut(s) 109, 203
Hpy188I TCNGA 2 cut(s) 154, 256
Hpy188III TCNNGA 3 cut(s) 299, 352, 556
Hpy8I GTNNAC 2 cut(s) 109, 203
HpyAV CCTTC 2 cut(s) 37, 505
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 7 cut(s) 35, 115, 383, 497, 503, 583, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 571, 580
HpyF3I CTNAG 8 cut(s) 60, 184, 197, 346, 528, 644, 665, 680
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 3 cut(s) 104, 549, 653
Kzo9I GATC 1 cut(s) 470
LpnPI CCDG 6 cut(s) 150, 164, 340, 356, 446, 606
LweI GCATC 2 cut(s) 106, 439
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 514, 566
MalI GATC 1 cut(s) 472
MboI GATC 1 cut(s) 470
MboII GAAGA 5 cut(s) 96, 167, 426, 640, 643
MflI RGATCY 1 cut(s) 470
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 4 cut(s) 13, 156, 250, 481
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 3 cut(s) 408, 660, 663
MslI CAYNNNNRTG 1 cut(s) 463
Mva1269I GAATGC 1 cut(s) 499
MwoI GCNNNNNNNGC 2 cut(s) 571, 580
NdeII GATC 1 cut(s) 470
NlaIII CATG 3 cut(s) 104, 549, 653
NmuCI GTSAC 2 cut(s) 514, 566
OliI CACNNNNGTG 1 cut(s) 463
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 1 cut(s) 552
Pfl23II CGTACG 1 cut(s) 428
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PspLI CGTACG 1 cut(s) 428
PspPI GGNCC 2 cut(s) 134, 163
PstI CTGCAG 2 cut(s) 37, 505
PsuI RGATCY 1 cut(s) 470
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
RseI CAYNNNNRTG 1 cut(s) 463
Sau3AI GATC 1 cut(s) 470
Sau96I GGNCC 2 cut(s) 134, 163
SchI GAGTC 1 cut(s) 317
SduI GDGCHC 1 cut(s) 274
SfaNI GCATC 2 cut(s) 106, 439
SfcI CTRYAG 2 cut(s) 33, 501
SmiMI CAYNNNNRTG 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 4 cut(s) 13, 156, 250, 481
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 491
TasI AATT 4 cut(s) 13, 156, 250, 481
TfiI GAWTC 1 cut(s) 552
TseFI GTSAC 2 cut(s) 514, 566
Tsp45I GTSAC 2 cut(s) 514, 566
TspDTI ATGAA 1 cut(s) 395
XapI RAATTY 3 cut(s) 13, 156, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.