RLG00000031202

NDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006390
Physical Location & Seq
Forward (+)
2934062 .. 2937145
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031202

Sequence Viewer

Length: 945 bp
ATGACAAAATCAAAGCATTTTACTGTTACGAAGGTAGAGAGGTTTGAGAAGAAAATAACGGAGAGAGGAGTAGTGCCGGAGAAAACTGCCAAAAGGGGGAAGGTCGACTCTGCTGTTGGCTCTGTTCCATCAGAAGTTGGAAATGTCCAAAACCAGGATACAGTTGGGGAGAACACCATTCCTGCATTTCATCAACCAGGAAGCGATACAGATCGAGTGGTTGATCATGTGGAGGTGGTCAATCAACACCTTTGGATGGCGATTAGAAATTCCATATTGAATGGAACTGCAGAACTGAAGGGGGCTTTACGAACTCAGCTTCAATACAAAACCTTGGGAAGAAACAGCAAGCATCATGGGTTAAACTTGCAAGCTGTATTACCAATCGGGCCAGATTGTAAGATTTCTAAAATTTTGGCCCTTTTGGGTCTTCTGGCCTTAGTTCTTTGGCTAAGTTTACGCCCAAAGTCCCCTTGTTATACCATTGTGGATATCACCATTCCAAATTCTGATATAGAGAATGGGGCACAGAATGGCTCTATTGTGTATGTTCTTGAGATTGAAAACTCTAACAAAGACTCCAGTATTTTTTATGATACCTCAGTCTTGACGTTCTATTATGGGCAGGATAAAGTTGCAGAGAAAACCATACCTCCTTTTCATCAAGGAAGAAGCAAAACCCGTACGGTGATGGATGATATTGATGCCAATCCACAGGTGTGGAGAGCTGTTCGCAATTCAATATCGAATGCAACTGCAGAGTTGAAGGTGACTTTGCTAACTAAGATTAGATACAAAACATGGGGAATCAAGAGTAAGCATCACGGGCAAGACTTGCAAGGTGCATTACCAATAGGTAAAGATGGCAAGCTTTCTGGTAAGAAGAAGAAAATCAAGCTAAGCCATGCTTCCAAGAAATTGAGGAGGAATAGTCTTAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

315

Amino Acids

34.91

Weight (kDa)

9.85

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 185 - 275 6.6e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AcsI RAATTY 3 cut(s) 268, 411, 505
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 685
AfiI CCNNNNNNNGG 3 cut(s) 96, 154, 256
AgsI TTSAA 5 cut(s) 280, 323, 563, 741, 766
AjnI CCWGG 2 cut(s) 153, 196
AleI CACNNNNGTG 1 cut(s) 718
AluBI AGCT 5 cut(s) 319, 374, 728, 871, 898
AluI AGCT 5 cut(s) 319, 374, 728, 871, 898
AoxI GGCC 3 cut(s) 389, 417, 435
ApoI RAATTY 3 cut(s) 268, 411, 505
AspS9I GGNCC 2 cut(s) 389, 418
AsuHPI GGTGA 3 cut(s) 487, 700, 781
BaeGI GKGCMC 1 cut(s) 529
BaeI ACNNNNGTAYC 2 cut(s) 588, 621
BbsI GAAGAC 1 cut(s) 422
BccI CCATC 4 cut(s) 136, 250, 685, 857
BciT130I CCWGG 2 cut(s) 155, 198
BciVI GTATCC 1 cut(s) 151
BclI TGATCA 1 cut(s) 223
BfmI CTRYAG 2 cut(s) 288, 756
BfuI GTATCC 1 cut(s) 151
BlpI GCTNAGC 1 cut(s) 899
Bme1390I CCNGG 2 cut(s) 155, 198
BmgT120I GGNCC 2 cut(s) 389, 418
BmrFI CCNGG 2 cut(s) 155, 198
BmsI GCATC 3 cut(s) 361, 694, 829
BpiI GAAGAC 1 cut(s) 422
BpmI CTGGAG 1 cut(s) 565
Bpu1102I GCTNAGC 1 cut(s) 899
BpuEI CTTGAG 1 cut(s) 575
BsaBI GATNNNNATC 2 cut(s) 210, 708
BsaJI CCNNGG 1 cut(s) 333
BsaXI ACNNNNNCTCC 5 cut(s) 563, 593, 637, 667, 916
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 154, 256
Bse1I ACTGG 1 cut(s) 582
Bse8I GATNNNNATC 2 cut(s) 210, 708
BseBI CCWGG 2 cut(s) 155, 198
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 261, 700
BseJI GATNNNNATC 2 cut(s) 210, 708
BseLI CCNNNNNNNGG 3 cut(s) 96, 154, 256
BseMII CTCAG 2 cut(s) 329, 615
BseNI ACTGG 1 cut(s) 582
BseRI GAGGAG 2 cut(s) 81, 937
BseSI GKGCMC 1 cut(s) 529
BshFI GGCC 3 cut(s) 391, 419, 437
BsiSI CCGG 1 cut(s) 77
BsiWI CGTACG 1 cut(s) 683
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 3 cut(s) 96, 154, 256
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 3 cut(s) 391, 419, 437
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 2 cut(s) 211, 223
Bsp1720I GCTNAGC 1 cut(s) 899
BspANI GGCC 3 cut(s) 391, 419, 437
BspCNI CTCAG 2 cut(s) 328, 614
BspMAI CTGCAG 2 cut(s) 292, 760
BsrI ACTGG 1 cut(s) 582
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 2 cut(s) 211, 223
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 155, 198
Bst4CI ACNGT 3 cut(s) 25, 163, 688
BstAPI GCANNNNNTGC 1 cut(s) 835
BstC8I GCNNGC 3 cut(s) 350, 372, 869
BstDEI CTNAG 7 cut(s) 315, 439, 452, 601, 783, 899, 935
BstF5I GGATG 2 cut(s) 261, 700
BstKTI GATC 2 cut(s) 214, 226
BstMBI GATC 2 cut(s) 211, 223
BstMWI GCNNNNNNNGC 2 cut(s) 826, 835
BstNI CCWGG 2 cut(s) 155, 198
BstSCI CCNGG 2 cut(s) 153, 196
BstSFI CTRYAG 2 cut(s) 288, 756
BstSLI GKGCMC 1 cut(s) 529
BstV2I GAAGAC 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 720
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 3 cut(s) 391, 419, 437
BtsCI GGATG 2 cut(s) 261, 700
Cac8I GCNNGC 3 cut(s) 350, 372, 869
Cfr13I GGNCC 2 cut(s) 389, 418
Csp6I GTAC 1 cut(s) 684
CviAII CATG 4 cut(s) 227, 356, 801, 905
CviQI GTAC 1 cut(s) 684
DdeI CTNAG 7 cut(s) 315, 439, 452, 601, 783, 899, 935
DpnI GATC 2 cut(s) 213, 225
DpnII GATC 2 cut(s) 211, 223
Eco130I CCWWGG 1 cut(s) 333
Eco32I GATATC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 317
EcoRII CCWGG 2 cut(s) 153, 196
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 4 cut(s) 230, 359, 804, 908
FalI AAGNNNNNCTT 2 cut(s) 892, 924
FaqI GGGAC 1 cut(s) 454
FatI CATG 4 cut(s) 226, 355, 800, 904
FbaI TGATCA 1 cut(s) 223
FblI GTMKAC 1 cut(s) 105
FokI GGATG 2 cut(s) 268, 707
GsuI CTGGAG 1 cut(s) 565
HaeIII GGCC 3 cut(s) 391, 419, 437
HapII CCGG 1 cut(s) 77
Hin1II CATG 4 cut(s) 230, 359, 804, 908
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 3 cut(s) 107, 578, 807
HpaII CCGG 1 cut(s) 77
HphI GGTGA 3 cut(s) 487, 700, 781
Hpy166II GTNNAC 2 cut(s) 106, 458
Hpy188I TCNGA 2 cut(s) 133, 511
Hpy188III TCNNGA 3 cut(s) 554, 607, 811
Hpy8I GTNNAC 2 cut(s) 106, 458
HpyAV CCTTC 4 cut(s) 25, 94, 292, 760
HpyCH4III ACNGT 3 cut(s) 25, 163, 688
HpyCH4IV ACGT 1 cut(s) 611
HpyCH4V TGCA 8 cut(s) 185, 290, 370, 638, 752, 758, 838, 845
HpyF10VI GCNNNNNNNGC 2 cut(s) 826, 835
HpyF3I CTNAG 7 cut(s) 315, 439, 452, 601, 783, 899, 935
HpySE526I ACGT 1 cut(s) 611
Hsp92II CATG 4 cut(s) 230, 359, 804, 908
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 211, 223
LweI GCATC 3 cut(s) 361, 694, 829
MaeII ACGT 1 cut(s) 611
MaeIII GTNAC 2 cut(s) 25, 769
MalI GATC 2 cut(s) 213, 225
MboI GATC 2 cut(s) 211, 223
MboII GAAGA 6 cut(s) 61, 351, 422, 681, 895, 898
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 5 cut(s) 268, 411, 505, 736, 917
MlyI GAGTC 2 cut(s) 101, 572
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 7 cut(s) 33, 59, 226, 610, 663, 915, 918
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 718
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 2 cut(s) 155, 198
Mva1269I GAATGC 1 cut(s) 754
MvaI CCWGG 2 cut(s) 155, 198
MwoI GCNNNNNNNGC 2 cut(s) 826, 835
NdeII GATC 2 cut(s) 211, 223
NlaIII CATG 4 cut(s) 230, 359, 804, 908
NmuCI GTSAC 1 cut(s) 769
OliI CACNNNNGTG 1 cut(s) 718
PctI GAATGC 1 cut(s) 754
PfeI GAWTC 1 cut(s) 807
Pfl23II CGTACG 1 cut(s) 683
PleI GAGTC 2 cut(s) 101, 572
PpsI GAGTC 2 cut(s) 101, 572
Psp6I CCWGG 2 cut(s) 153, 196
PspGI CCWGG 2 cut(s) 153, 196
PspLI CGTACG 1 cut(s) 683
PspPI GGNCC 2 cut(s) 389, 418
PstI CTGCAG 2 cut(s) 292, 760
RsaI GTAC 1 cut(s) 685
RsaNI GTAC 1 cut(s) 684
RseI CAYNNNNRTG 1 cut(s) 718
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 362
Sau3AI GATC 2 cut(s) 211, 223
Sau96I GGNCC 2 cut(s) 389, 418
SchI GAGTC 2 cut(s) 101, 572
ScrFI CCNGG 2 cut(s) 155, 198
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 3 cut(s) 361, 694, 829
SfcI CTRYAG 2 cut(s) 288, 756
SmiMI CAYNNNNRTG 1 cut(s) 718
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 5 cut(s) 268, 411, 505, 736, 917
StyD4I CCNGG 2 cut(s) 153, 196
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 3 cut(s) 25, 163, 688
TaiI ACGT 1 cut(s) 614
TaqI TCGA 3 cut(s) 105, 214, 746
TasI AATT 5 cut(s) 268, 411, 505, 736, 917
TfiI GAWTC 1 cut(s) 807
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TseFI GTSAC 1 cut(s) 769
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 2 cut(s) 179, 650
TspGWI ACGGA 1 cut(s) 74
XapI RAATTY 3 cut(s) 268, 411, 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.